Wall clock time and date at job start Mon Mar 30 2020 04:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 H 1.09002 * 109.46883 * 303.75333 * 3 2 1 5 5 C 1.50697 * 109.47227 * 183.75319 * 3 2 1 6 6 H 1.07996 * 120.00224 * 245.02025 * 5 3 2 7 7 C 1.37878 * 119.99575 * 65.01880 * 5 3 2 8 8 N 1.31509 * 120.00408 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99672 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47325 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47074 * 119.99935 * 9 7 5 12 12 H 1.48495 * 109.47113 * 239.99846 * 9 7 5 13 13 N 1.46899 * 109.47238 * 63.75517 * 3 2 1 14 14 C 1.49445 * 111.00335 * 179.02646 * 13 3 2 15 15 H 1.09001 * 113.44178 * 36.57218 * 14 13 3 16 16 C 1.55359 * 106.93182 * 271.42478 * 14 13 3 17 17 C 1.54108 * 105.03168 * 340.28836 * 16 14 13 18 18 C 1.48521 * 111.00069 * 64.86981 * 13 3 2 19 19 H 1.08999 * 102.65081 * 337.94301 * 18 13 3 20 20 C 1.51030 * 111.68705 * 226.82965 * 18 13 3 21 21 N 1.51315 * 110.33585 * 303.77650 * 20 18 13 22 22 C 1.46908 * 110.99872 * 205.59512 * 21 20 18 23 23 C 1.44653 * 111.70676 * 330.06493 * 21 20 18 24 24 C 1.51092 * 112.83361 * 88.81054 * 23 21 20 25 25 H 1.09002 * 109.46928 * 59.99991 * 1 2 3 26 26 H 1.09003 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47108 * 299.99779 * 1 2 3 28 28 H 1.08997 * 109.47108 * 240.00221 * 2 1 3 29 29 H 1.09002 * 109.46928 * 120.00009 * 2 1 3 30 30 H 0.97007 * 120.00459 * 179.97438 * 8 7 5 31 31 H 1.09000 * 110.32748 * 99.17856 * 16 14 13 32 32 H 1.08997 * 110.32990 * 221.39968 * 16 14 13 33 33 H 1.08997 * 110.31896 * 119.91920 * 17 16 14 34 34 H 1.09000 * 110.31608 * 242.00055 * 17 16 14 35 35 H 1.09002 * 109.32884 * 64.04689 * 20 18 13 36 36 H 1.09009 * 109.32453 * 183.51439 * 20 18 13 37 37 H 1.08996 * 109.46838 * 60.00426 * 22 21 20 38 38 H 1.09002 * 109.47091 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.46743 * 300.00090 * 22 21 20 40 40 H 1.09003 * 108.81054 * 327.94447 * 23 21 20 41 41 H 1.09000 * 108.81202 * 209.67760 * 23 21 20 42 42 H 1.08999 * 108.62615 * 156.94668 * 24 23 21 43 43 H 1.09003 * 108.62441 * 39.16384 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6228 1.9754 -0.8545 5 6 3.5442 1.4436 -0.0930 6 1 4.1357 1.8203 0.7282 7 6 4.1650 0.9635 -1.2266 8 7 3.4447 0.5042 -2.2265 9 14 6.0295 0.9642 -1.3416 10 1 6.6024 1.5281 -0.0930 11 1 6.5146 -0.4274 -1.5250 12 1 6.4538 1.7928 -2.4986 13 7 1.6259 2.1083 1.2422 14 6 2.1271 3.5155 1.2886 15 1 2.1193 4.0107 0.3176 16 6 3.5396 3.4716 1.9340 17 6 3.5938 2.1275 2.6861 18 6 2.2704 1.4798 2.4234 19 1 2.5286 0.4872 2.0546 20 6 1.2751 1.2176 3.5287 21 7 0.5712 2.4994 3.9176 22 6 0.0902 2.4360 5.3042 23 6 1.4154 3.6563 3.7140 24 6 1.2922 4.2347 2.3236 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8815 0.1668 -3.0242 31 1 4.3094 3.5055 1.1631 32 1 3.6635 4.3006 2.6308 33 1 4.4020 1.5083 2.2968 34 1 3.7286 2.2968 3.7544 35 1 0.5384 0.4911 3.1859 36 1 1.7977 0.8154 4.3968 37 1 0.9355 2.2841 5.9754 38 1 -0.4121 3.3697 5.5575 39 1 -0.6100 1.6073 5.4083 40 1 2.4529 3.3687 3.8844 41 1 1.1420 4.4228 4.4391 42 1 1.5989 5.2802 2.3531 43 1 0.2464 4.1903 2.0195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718920358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:06 Heat of formation + Delta-G solvation = 23.515035 kcal Electronic energy + Delta-G solvation = -21084.163350 eV Core-core repulsion = 18357.568734 eV Total energy + Delta-G solvation = -2726.594616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86098 -37.53172 -35.58522 -33.91200 -33.13345 -31.04558 -29.88688 -28.21188 -26.74767 -25.32993 -24.52217 -22.18187 -21.89965 -20.32021 -19.87926 -18.40673 -17.84890 -16.48485 -16.30438 -15.80786 -15.26550 -15.22239 -14.81159 -14.56914 -14.47138 -13.80579 -13.68651 -13.36174 -13.21580 -12.90642 -12.88596 -12.64870 -12.55680 -12.42766 -12.25347 -12.05796 -11.91435 -11.80761 -11.58310 -11.46671 -11.19288 -11.06128 -10.68615 -10.54418 -10.36491 -9.02711 -8.84095 -7.98316 -6.14791 1.34900 1.38962 1.46567 2.43033 3.06428 3.24489 3.59339 3.80716 3.96046 4.13857 4.27585 4.42824 4.52642 4.57777 4.59287 4.65868 4.72122 4.77385 4.78858 4.89982 4.91565 4.94925 5.02938 5.09587 5.13868 5.18938 5.23811 5.26954 5.38098 5.43306 5.47364 5.53547 5.62845 5.68749 5.74690 5.82944 6.07204 6.25900 6.32621 6.48249 6.58015 6.66574 7.09034 7.55751 9.01027 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.008727 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.369047 B = 3207.522202 C = 3698.477042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C 0.207 3.793 4 H -0.002 1.002 5 C -0.553 4.553 6 H 0.094 0.906 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.478 5.478 14 C 0.068 3.932 15 H 0.062 0.938 16 C -0.132 4.132 17 C -0.112 4.112 18 C 0.049 3.951 19 H 0.040 0.960 20 C 0.096 3.904 21 N -0.550 5.550 22 C 0.029 3.971 23 C 0.057 3.943 24 C -0.095 4.095 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 4.659 13.733 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C 0.099 3.901 4 H 0.016 0.984 5 C -0.592 4.592 6 H 0.112 0.888 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.763 3.237 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.200 5.200 14 C -0.041 4.041 15 H 0.080 0.920 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.060 4.060 19 H 0.059 0.941 20 C -0.031 4.031 21 N -0.276 5.276 22 C -0.119 4.119 23 C -0.071 4.071 24 C -0.134 4.134 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.946 4.577 13.259 14.571 hybrid contribution 2.707 -0.466 -0.684 2.831 sum -1.239 4.111 12.575 13.288 Atomic orbital electron populations 1.21568 0.96421 0.99564 1.00697 1.21394 0.94372 0.98523 0.99392 1.19252 0.92346 0.91059 0.87412 0.98403 1.22969 0.94050 1.39717 1.02475 0.88811 1.25666 1.01070 0.95613 0.96019 1.70080 1.36039 1.43452 1.06520 0.85849 0.82614 0.77252 0.77994 1.18867 1.21372 1.21445 1.66064 1.51159 1.01129 1.01621 1.22596 0.92936 0.91728 0.96887 0.91974 1.23122 0.98300 0.97071 0.98636 1.21722 0.96745 0.96782 0.99748 1.21319 0.92038 0.99842 0.92805 0.94144 1.22319 0.94382 0.91452 0.94908 1.62154 1.40422 1.02200 1.22798 1.22440 0.99293 1.02875 0.87246 1.21419 0.96710 0.92474 0.96505 1.20875 1.00052 0.97981 0.94457 0.95282 0.93763 0.92190 0.93397 0.94714 0.93562 0.93656 0.90017 0.92753 0.90534 0.91429 0.93205 0.95606 0.90770 0.91437 0.93236 0.90905 0.90956 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.79 71.98 0.70 -4.46 16 2 C -0.10 -4.71 5.16 30.60 0.16 -4.56 16 3 C 0.21 10.26 1.71 44.17 0.08 10.34 16 4 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 5 C -0.55 -28.70 6.60 25.60 0.17 -28.53 16 6 H 0.09 4.61 2.28 -2.91 -0.01 4.60 16 7 C 0.01 0.81 5.31 84.66 0.45 1.26 16 8 N -0.92 -53.52 11.68 21.45 0.25 -53.27 16 9 Si 0.94 43.43 29.54 68.60 2.03 45.45 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 N -0.48 -19.64 4.23 -823.36 -3.48 -23.13 16 14 C 0.07 2.54 3.47 44.64 0.16 2.70 16 15 H 0.06 2.60 8.06 -2.39 -0.02 2.58 16 16 C -0.13 -4.56 4.99 31.78 0.16 -4.40 16 17 C -0.11 -3.82 4.83 29.90 0.14 -3.68 16 18 C 0.05 1.79 1.46 42.89 0.06 1.86 16 19 H 0.04 1.71 4.68 -2.39 -0.01 1.69 16 20 C 0.10 2.94 5.94 84.79 0.50 3.44 16 21 N -0.55 -15.36 4.92 -923.45 -4.55 -19.91 16 22 C 0.03 0.62 9.36 127.69 1.19 1.81 16 23 C 0.06 1.52 4.83 86.10 0.42 1.93 16 24 C -0.10 -2.87 4.76 29.38 0.14 -2.73 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.39 7.71 -2.39 -0.02 2.37 16 28 H 0.05 2.61 6.40 -2.39 -0.02 2.60 16 29 H 0.03 1.62 6.10 -2.39 -0.01 1.60 16 30 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.04 1.78 6.82 -2.39 -0.02 1.76 16 32 H 0.08 2.30 6.99 -2.39 -0.02 2.29 16 33 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 34 H 0.08 2.18 6.78 -2.39 -0.02 2.16 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.33 7.87 -2.38 -0.02 1.31 16 37 H 0.03 0.49 8.09 -2.39 -0.02 0.47 16 38 H 0.07 1.36 7.90 -2.39 -0.02 1.34 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.34 3.39 -2.39 -0.01 1.33 16 41 H 0.07 1.61 7.50 -2.39 -0.02 1.59 16 42 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -58.75 302.41 -0.44 -59.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.98 Total: 16.68 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.33 Total: -25.02 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -7.78 Total: -96.30 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -58.75 -0.44 -59.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718920358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.705 kcal (2) G-P(sol) polarization free energy of solvation -58.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds