Wall clock time and date at job start Mon Mar 30 2020 04:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 H 1.09000 * 109.47833 * 55.49716 * 3 2 1 5 5 C 1.50697 * 109.47403 * 175.50217 * 3 2 1 6 6 H 1.07997 * 120.00583 * 121.72137 * 5 3 2 7 7 C 1.37879 * 119.99682 * 301.72301 * 5 3 2 8 8 N 1.31515 * 120.00109 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99935 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47322 * 90.00060 * 9 7 5 11 11 H 1.48505 * 109.46742 * 209.99932 * 9 7 5 12 12 H 1.48500 * 109.47341 * 329.99766 * 9 7 5 13 13 N 1.46881 * 109.46974 * 295.49929 * 3 2 1 14 14 C 1.49862 * 111.26730 * 299.34324 * 13 3 2 15 15 H 1.09901 * 111.65462 * 31.18225 * 14 13 3 16 16 C 1.54144 * 106.93510 * 268.47297 * 14 13 3 17 17 C 1.54013 * 104.84360 * 334.95697 * 16 14 13 18 18 C 1.48140 * 111.06155 * 183.02636 * 13 3 2 19 19 H 1.08977 * 107.50232 * 341.68162 * 18 13 3 20 20 C 1.52573 * 109.98262 * 224.96201 * 18 13 3 21 21 N 1.50345 * 109.82800 * 325.17250 * 20 18 13 22 22 C 1.46958 * 110.91306 * 184.19573 * 21 20 18 23 23 C 1.44695 * 111.59608 * 308.46510 * 21 20 18 24 24 C 1.50756 * 106.32985 * 152.84110 * 14 13 3 25 25 H 1.08993 * 109.47101 * 175.41552 * 1 2 3 26 26 H 1.09000 * 109.46917 * 295.41738 * 1 2 3 27 27 H 1.09005 * 109.47178 * 55.41655 * 1 2 3 28 28 H 1.08993 * 109.47187 * 239.99602 * 2 1 3 29 29 H 1.09002 * 109.47011 * 119.99558 * 2 1 3 30 30 H 0.96995 * 120.00240 * 180.02562 * 8 7 5 31 31 H 1.09482 * 110.68641 * 215.81514 * 16 14 13 32 32 H 1.09408 * 110.84406 * 94.34303 * 16 14 13 33 33 H 1.09061 * 110.80554 * 251.74066 * 17 16 14 34 34 H 1.09409 * 110.24708 * 130.50728 * 17 16 14 35 35 H 1.09008 * 109.23152 * 85.08811 * 20 18 13 36 36 H 1.08896 * 109.39922 * 204.92182 * 20 18 13 37 37 H 1.08996 * 109.47293 * 188.58143 * 22 21 20 38 38 H 1.08997 * 109.47034 * 308.58891 * 22 21 20 39 39 H 1.09004 * 109.46665 * 68.58597 * 22 21 20 40 40 H 1.08758 * 109.44785 * 331.82193 * 23 21 20 41 41 H 1.09499 * 108.25539 * 214.41432 * 23 21 20 42 42 H 1.09221 * 108.32950 * 175.96750 * 24 14 13 43 43 H 1.09304 * 108.20034 * 292.49136 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9792 0.8469 5 6 3.5428 1.4440 0.1114 6 1 4.1407 1.9154 -0.6546 7 6 4.1546 0.8436 1.1914 8 7 5.4661 0.8454 1.2890 9 14 3.1205 0.0290 2.5167 10 1 2.8993 -1.3968 2.1654 11 1 3.8289 0.1137 3.8191 12 1 1.8114 0.7224 2.6192 13 7 1.6411 2.1028 -1.2499 14 6 2.2218 1.4053 -2.4425 15 1 2.3376 0.3269 -2.2650 16 6 3.5707 2.0858 -2.7479 17 6 3.4369 3.5057 -2.1665 18 6 2.1792 3.4813 -1.3191 19 1 2.4536 3.7771 -0.3068 20 6 1.0945 4.4410 -1.7987 21 7 0.2092 3.7512 -2.7990 22 6 -0.7837 4.6832 -3.3515 23 6 0.9806 3.1312 -3.8546 24 6 1.2826 1.6753 -3.5904 25 1 -0.3633 -1.0243 -0.0821 26 1 -0.3633 0.4411 0.9282 27 1 -0.3634 0.5833 -0.8461 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8965 0.4227 2.0485 31 1 3.7464 2.1290 -3.8277 32 1 4.3948 1.5492 -2.2684 33 1 3.3500 4.2443 -2.9642 34 1 4.3051 3.7435 -1.5445 35 1 0.4952 4.7606 -0.9460 36 1 1.5594 5.3099 -2.2621 37 1 -1.5050 4.1309 -3.9537 38 1 -1.3017 5.1876 -2.5359 39 1 -0.2805 5.4226 -3.9747 40 1 1.9110 3.6773 -3.9917 41 1 0.4077 3.2022 -4.7851 42 1 1.7127 1.2411 -4.4956 43 1 0.3402 1.1594 -3.3891 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718920359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:09 Heat of formation + Delta-G solvation = 31.142224 kcal Electronic energy + Delta-G solvation = -21070.763670 eV Core-core repulsion = 18344.499794 eV Total energy + Delta-G solvation = -2726.263876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97992 -36.27757 -33.89656 -32.36290 -31.91910 -29.41657 -28.44444 -26.85987 -25.34489 -24.18838 -22.45273 -20.95499 -20.21433 -19.11144 -18.28286 -16.95294 -16.09049 -15.02296 -14.89369 -14.20089 -13.97941 -13.84199 -13.61236 -12.83820 -12.78000 -12.59108 -12.37280 -12.01608 -11.95602 -11.62974 -11.43781 -11.26801 -10.97437 -10.89769 -10.85265 -10.71741 -10.42798 -10.07817 -9.88118 -9.85351 -9.54160 -9.39085 -9.26834 -8.82195 -8.49801 -7.76300 -7.20253 -6.05292 -4.05100 3.29734 3.41563 3.44147 4.24494 4.43650 5.01679 5.22616 5.26441 5.33580 5.44007 5.49685 5.60347 5.72104 5.78659 5.90280 5.95346 6.01479 6.07533 6.08529 6.13801 6.16223 6.23593 6.26192 6.34158 6.51516 6.60861 6.63870 6.71810 6.77486 6.79316 6.86508 6.98272 7.01353 7.14742 7.21079 7.34049 7.46681 7.63366 7.66766 8.12668 8.29692 8.53436 9.02056 9.59945 11.06285 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.008765 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.348346 B = 3193.630278 C = 3523.418474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.168 3.832 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.098 0.902 7 C 0.073 3.927 8 N -0.901 5.901 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.302 1.302 12 H -0.265 1.265 13 N -0.466 5.466 14 C 0.077 3.923 15 H 0.088 0.912 16 C -0.136 4.136 17 C -0.122 4.122 18 C 0.070 3.930 19 H 0.071 0.929 20 C 0.077 3.923 21 N -0.521 5.521 22 C 0.028 3.972 23 C 0.072 3.928 24 C -0.097 4.097 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.013 0.987 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 4.576 -8.727 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.060 3.940 4 H 0.054 0.946 5 C -0.590 4.590 6 H 0.116 0.884 7 C -0.129 4.129 8 N -0.540 5.540 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.230 1.230 12 H -0.190 1.190 13 N -0.188 5.188 14 C -0.032 4.032 15 H 0.105 0.895 16 C -0.174 4.174 17 C -0.160 4.160 18 C -0.040 4.040 19 H 0.090 0.910 20 C -0.050 4.050 21 N -0.245 5.245 22 C -0.120 4.120 23 C -0.056 4.056 24 C -0.136 4.136 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.448 4.144 -8.364 13.281 hybrid contribution 1.032 0.069 0.561 1.177 sum -8.416 4.214 -7.804 12.226 Atomic orbital electron populations 1.21744 0.97276 0.99344 1.01803 1.21945 0.94188 0.99340 1.00280 1.19940 0.94579 0.90564 0.88949 0.94641 1.22245 0.90778 1.36920 1.09098 0.88397 1.25018 0.94617 0.95638 0.97660 1.69904 1.08475 1.44858 1.30714 0.86907 0.80667 0.79973 0.80863 1.20861 1.23035 1.19036 1.65604 1.51656 0.99656 1.01899 1.22476 0.90938 0.98871 0.90914 0.89457 1.22916 0.99926 0.95867 0.98713 1.22173 0.98572 0.96919 0.98358 1.21719 0.90915 0.91810 0.99549 0.91042 1.22724 0.93860 0.93711 0.94709 1.61871 1.16678 1.30779 1.15214 1.22389 0.95815 0.94917 0.98900 1.21129 0.96255 0.95992 0.92239 1.20820 1.00152 0.95506 0.97089 0.95100 0.94230 0.91225 0.92343 0.93870 0.92874 0.93444 0.90051 0.93352 0.91456 0.91268 0.95503 0.92037 0.91965 0.96836 0.94600 0.93526 0.93366 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.85 37.16 0.37 -2.36 16 2 C -0.12 -2.61 4.73 -26.73 -0.13 -2.74 16 3 C 0.17 3.85 1.23 -68.88 -0.08 3.77 16 4 H 0.04 0.88 7.31 -51.93 -0.38 0.50 16 5 C -0.55 -14.45 7.52 -34.44 -0.26 -14.71 16 6 H 0.10 2.65 3.35 -52.49 -0.18 2.48 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 22.03 24.35 -169.99 -4.14 17.89 16 10 H -0.28 -6.92 6.84 56.52 0.39 -6.53 16 11 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 N -0.47 -9.25 3.63 -210.13 -0.76 -10.01 16 14 C 0.08 1.42 2.82 -66.58 -0.19 1.23 16 15 H 0.09 1.74 5.77 -51.42 -0.30 1.44 16 16 C -0.14 -2.51 5.08 -25.60 -0.13 -2.64 16 17 C -0.12 -2.20 4.86 -26.87 -0.13 -2.33 16 18 C 0.07 1.31 2.07 -67.92 -0.14 1.17 16 19 H 0.07 1.50 7.24 -51.94 -0.38 1.13 16 20 C 0.08 1.23 5.31 -2.11 -0.01 1.22 16 21 N -0.52 -7.93 4.48 -243.10 -1.09 -9.02 16 22 C 0.03 0.35 9.32 60.10 0.56 0.91 16 23 C 0.07 1.06 4.92 -6.00 -0.03 1.03 16 24 C -0.10 -1.52 4.85 -28.85 -0.14 -1.66 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.30 7.61 -51.93 -0.40 0.90 16 28 H 0.06 1.25 5.89 -51.93 -0.31 0.94 16 29 H 0.04 1.01 2.98 -51.93 -0.15 0.86 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 0.77 7.86 -51.66 -0.41 0.36 16 32 H 0.08 1.76 6.53 -51.70 -0.34 1.43 16 33 H 0.05 0.78 6.34 -51.89 -0.33 0.45 16 34 H 0.07 1.34 7.67 -51.70 -0.40 0.94 16 35 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 36 H 0.03 0.40 7.73 -51.99 -0.40 -0.01 16 37 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 38 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 40 H 0.04 0.54 5.18 -52.07 -0.27 0.27 16 41 H 0.05 0.61 7.58 -51.65 -0.39 0.22 16 42 H 0.05 0.67 8.11 -51.80 -0.42 0.25 16 43 H 0.06 1.01 8.17 -51.76 -0.42 0.58 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -28.19 297.31 -8.32 -36.51 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.17 Total: 1.42 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.41 Total: -15.17 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -1.08 Total: -45.12 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.19 -8.32 -36.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718920359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.648 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds