Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47161 * 180.02562 * 11 10 9 13 13 C 1.48536 * 111.00392 * 52.59345 * 12 11 10 14 14 C 1.54936 * 103.22515 * 159.72385 * 13 12 11 15 15 C 1.54601 * 102.92584 * 322.59170 * 14 13 12 16 16 H 1.09004 * 110.30380 * 263.04465 * 15 14 13 17 17 C 1.52994 * 110.39682 * 140.91838 * 15 14 13 18 18 N 1.46895 * 109.47156 * 69.23217 * 17 15 14 19 19 C 1.46904 * 110.99818 * 180.02562 * 18 17 15 20 20 C 1.53006 * 117.49644 * 223.62295 * 19 18 17 21 21 C 1.52998 * 60.00066 * 252.51092 * 20 19 18 22 22 C 1.47902 * 111.00182 * 169.99767 * 12 11 10 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 29 29 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 30 30 H 1.08993 * 110.66687 * 278.16191 * 13 12 11 31 31 H 1.09001 * 110.66177 * 41.29691 * 13 12 11 32 32 H 1.09000 * 110.72635 * 204.23126 * 14 13 12 33 33 H 1.09003 * 110.87603 * 81.01727 * 14 13 12 34 34 H 1.09004 * 109.47207 * 189.23575 * 17 15 14 35 35 H 1.09004 * 109.46757 * 309.23491 * 17 15 14 36 36 H 1.00901 * 111.00342 * 303.95543 * 18 17 15 37 37 H 1.08994 * 115.55240 * 9.32574 * 19 18 17 38 38 H 1.09003 * 117.49993 * 0.02562 * 20 19 18 39 39 H 1.08997 * 117.49561 * 145.01791 * 20 19 18 40 40 H 1.08998 * 117.49875 * 252.51339 * 21 20 19 41 41 H 1.09002 * 117.50250 * 107.48796 * 21 20 19 42 42 H 1.08999 * 109.91610 * 333.50445 * 22 12 11 43 43 H 1.09001 * 109.91634 * 94.79983 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 3.4204 -5.9610 1.1017 14 6 3.9642 -7.4008 1.2795 15 6 2.7098 -8.2750 1.0505 16 1 2.2597 -8.5480 2.0050 17 6 3.0731 -9.5316 0.2570 18 7 3.8950 -10.4175 1.0922 19 6 4.2643 -11.6370 0.3611 20 6 4.1614 -12.9677 1.1094 21 6 5.5346 -12.3673 0.8014 22 6 1.7457 -7.3902 0.2387 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 0.8535 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 4.2216 -5.2797 0.8156 31 1 2.9307 -5.6194 2.0136 32 1 4.3553 -7.5438 2.2868 33 1 4.7293 -7.6218 0.5352 34 1 2.1616 -10.0519 -0.0370 35 1 3.6338 -9.2491 -0.6341 36 1 4.7151 -9.9370 1.4309 37 1 4.0263 -11.6378 -0.7026 38 1 3.8194 -12.9382 2.1439 39 1 3.8556 -13.8440 0.5379 40 1 6.1322 -12.8488 0.0273 41 1 6.0965 -11.9428 1.6334 42 1 0.8302 -7.2211 0.8056 43 1 1.5136 -7.8695 -0.7124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719054473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = -8.497493 kcal Electronic energy + Delta-G solvation = -18145.892397 eV Core-core repulsion = 15417.909614 eV Total energy + Delta-G solvation = -2727.982783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35108 -38.61571 -36.44290 -35.08516 -33.52134 -31.36001 -30.12879 -28.05367 -25.29403 -24.48417 -23.20528 -22.78956 -21.99883 -21.23630 -20.77042 -18.51998 -17.27742 -16.87778 -16.81137 -16.42679 -16.28628 -15.55452 -15.25101 -14.74468 -14.44319 -14.21241 -14.01496 -13.69948 -13.55927 -13.22876 -12.97508 -12.75601 -12.53644 -12.34339 -12.30649 -12.20775 -11.99990 -11.78246 -11.71440 -11.50939 -11.41847 -11.32812 -11.18137 -11.04298 -10.56069 -9.36686 -9.24484 -8.21056 -6.32552 1.39115 1.42669 1.50632 2.40188 2.92005 3.01568 3.10815 3.11750 3.69789 3.71487 3.98026 4.05582 4.12961 4.19637 4.28986 4.31733 4.37020 4.51109 4.55853 4.61036 4.68152 4.74166 4.82121 4.83507 4.89920 4.92812 4.98553 5.05254 5.10252 5.12020 5.15530 5.21483 5.31346 5.34485 5.49502 5.71307 5.83336 6.00194 6.06184 6.11453 6.25639 6.41516 6.83767 7.36600 8.90750 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.067047 B = 0.002843 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.518596 B = 9847.850443 C =10106.434103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.058 3.942 12 N -0.526 5.526 13 C 0.031 3.969 14 C -0.110 4.110 15 C -0.087 4.087 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.665 5.665 19 C 0.002 3.998 20 C -0.173 4.173 21 C -0.186 4.186 22 C 0.037 3.963 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.011 1.011 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.346 0.654 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -23.918 2.205 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.070 4.070 12 N -0.250 5.250 13 C -0.097 4.097 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.101 0.899 17 C -0.048 4.048 18 N -0.296 5.296 19 C -0.108 4.108 20 C -0.211 4.211 21 C -0.224 4.224 22 C -0.091 4.091 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.166 0.834 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.196 -24.079 1.999 25.852 hybrid contribution 0.040 1.535 0.130 1.541 sum 9.236 -22.544 2.130 24.455 Atomic orbital electron populations 1.70094 1.07827 1.27885 1.51591 1.26020 0.95821 1.03474 0.94672 0.85475 0.78268 0.77926 0.79239 1.19128 1.20728 1.19092 1.21649 0.93501 0.92356 1.50685 0.92259 1.18969 0.94390 0.93147 0.94675 1.21432 0.98024 0.92815 1.00622 1.22207 0.94095 0.90755 0.99930 1.64821 1.14646 1.01823 1.43687 1.23249 0.95649 0.98508 0.92296 1.22543 0.97103 0.92479 1.02627 1.21934 0.95648 0.94018 0.99024 0.89859 1.21928 0.97491 0.91697 0.93662 1.60212 1.24413 1.06748 1.38219 1.22456 1.02247 0.89846 0.96259 1.23162 0.99791 0.96330 1.01842 1.23300 0.90867 1.04312 1.03952 1.22960 0.95992 0.89984 1.00164 0.92724 0.99039 0.99237 0.93028 0.92993 0.95633 0.91531 0.90616 0.94497 0.89467 0.90600 0.90840 0.94699 0.83403 0.88133 0.89056 0.87996 0.87712 0.88380 0.94048 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.93 4.81 30.59 0.15 -3.78 16 11 C 0.06 2.13 5.03 86.30 0.43 2.56 16 12 N -0.53 -15.90 5.40 -883.02 -4.76 -20.67 16 13 C 0.03 0.83 5.10 86.65 0.44 1.27 16 14 C -0.11 -2.16 5.89 31.80 0.19 -1.97 16 15 C -0.09 -1.69 3.22 -9.91 -0.03 -1.72 16 16 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 17 C 0.08 1.39 4.69 86.30 0.40 1.80 16 18 N -0.66 -10.59 6.75 -491.56 -3.32 -13.90 16 19 C 0.00 0.03 6.26 44.92 0.28 0.31 16 20 C -0.17 -2.27 10.46 30.60 0.32 -1.95 16 21 C -0.19 -2.19 10.33 30.59 0.32 -1.87 16 22 C 0.04 0.91 6.36 86.45 0.55 1.46 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 2.18 6.79 -2.39 -0.02 2.16 16 28 H 0.03 0.95 7.81 -2.39 -0.02 0.93 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.15 7.66 -2.39 -0.02 2.14 16 31 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.43 7.77 -2.39 -0.02 1.41 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 35 H 0.03 0.63 8.00 -2.38 -0.02 0.61 16 36 H 0.35 5.03 8.00 -89.69 -0.72 4.32 16 37 H 0.10 1.41 7.90 -2.39 -0.02 1.39 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.04 1.05 7.57 -2.39 -0.02 1.03 16 43 H 0.08 1.90 7.68 -2.39 -0.02 1.88 16 Total: -1.00 -64.49 340.77 -1.64 -66.14 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.23 Total: 12.70 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.89 Total: -33.60 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -7.80 Total: -92.20 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.49 -1.64 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.638 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds