Wall clock time and date at job start Mon Mar 30 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 H 1.08998 * 109.46950 * 303.63343 * 3 2 1 5 5 C 1.50697 * 109.47631 * 183.62750 * 3 2 1 6 6 H 1.07991 * 120.00239 * 243.63638 * 5 3 2 7 7 C 1.37886 * 119.99831 * 63.63433 * 5 3 2 8 8 N 1.31508 * 119.99970 * 197.02577 * 7 5 3 9 9 Si 1.86802 * 119.99513 * 17.02836 * 7 5 3 10 10 H 1.48506 * 109.47010 * 91.81333 * 9 7 5 11 11 H 1.48503 * 109.46784 * 211.80819 * 9 7 5 12 12 H 1.48498 * 109.47421 * 331.80935 * 9 7 5 13 13 N 1.46906 * 109.47053 * 63.62855 * 3 2 1 14 14 C 1.49215 * 110.99905 * 62.29002 * 13 3 2 15 15 C 1.55057 * 102.69821 * 161.53363 * 14 13 3 16 16 C 1.55711 * 103.11186 * 323.38848 * 15 14 13 17 17 H 1.09003 * 109.61279 * 260.46840 * 16 15 14 18 18 C 1.46269 * 111.21516 * 177.29253 * 13 3 2 19 19 H 1.09000 * 104.79870 * 321.38463 * 18 13 3 20 20 C 1.50333 * 113.90347 * 74.55488 * 18 13 3 21 21 C 1.52674 * 112.45930 * 98.23859 * 20 18 13 22 22 C 1.53470 * 107.55616 * 53.16503 * 21 20 18 23 23 N 1.45351 * 107.44171 * 141.41367 * 16 15 14 24 24 C 1.46898 * 111.00038 * 80.08671 * 23 16 15 25 25 H 1.08996 * 109.47186 * 174.93385 * 1 2 3 26 26 H 1.09001 * 109.47503 * 294.92882 * 1 2 3 27 27 H 1.08995 * 109.47342 * 54.93086 * 1 2 3 28 28 H 1.08999 * 109.47387 * 240.00007 * 2 1 3 29 29 H 1.09005 * 109.47630 * 119.99966 * 2 1 3 30 30 H 0.96999 * 120.00043 * 180.02562 * 8 7 5 31 31 H 1.08999 * 110.76547 * 43.23519 * 14 13 3 32 32 H 1.08995 * 110.77055 * 279.83674 * 14 13 3 33 33 H 1.09004 * 110.69092 * 204.98507 * 15 14 13 34 34 H 1.08996 * 110.69386 * 81.80082 * 15 14 13 35 35 H 1.09006 * 108.63332 * 337.70685 * 20 18 13 36 36 H 1.09003 * 109.29463 * 219.22896 * 20 18 13 37 37 H 1.08999 * 109.85207 * 293.62972 * 21 20 18 38 38 H 1.09005 * 109.85659 * 172.70017 * 21 20 18 39 39 H 1.09003 * 109.74726 * 52.06840 * 22 21 20 40 40 H 1.08998 * 109.74543 * 172.74058 * 22 21 20 41 41 H 1.09001 * 109.47793 * 185.22896 * 24 23 16 42 42 H 1.09004 * 109.47144 * 305.22695 * 24 23 16 43 43 H 1.08999 * 109.47476 * 65.22759 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6245 1.9747 -0.8556 5 6 3.5443 1.4435 -0.0899 6 1 4.1335 1.8414 0.7229 7 6 4.1683 0.9363 -1.2100 8 7 5.4452 0.6247 -1.1669 9 14 3.1998 0.6920 -2.7885 10 1 3.3101 1.9103 -3.6306 11 1 3.7468 -0.4730 -3.5295 12 1 1.7728 0.4444 -2.4606 13 7 1.6232 2.1092 1.2409 14 6 2.2192 1.4398 2.4338 15 6 2.0801 2.5210 3.5365 16 6 2.3380 3.8483 2.7642 17 1 3.3662 4.1719 2.9262 18 6 2.1456 3.4737 1.3099 19 1 3.1507 3.4084 0.8931 20 6 1.4360 4.4440 0.4072 21 6 0.3800 5.2626 1.1459 22 6 1.0607 5.9083 2.3604 23 7 1.4231 4.8456 3.2943 24 6 1.9261 5.4033 4.5568 25 1 -0.3633 -1.0236 -0.0907 26 1 -0.3634 0.4331 0.9319 27 1 -0.3634 0.5904 -0.8410 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8843 0.2683 -1.9550 31 1 3.2678 1.1994 2.2585 32 1 1.6553 0.5449 2.6968 33 1 2.8297 2.3763 4.3145 34 1 1.0762 2.5113 3.9610 35 1 0.9514 3.8847 -0.3931 36 1 2.1644 5.1249 -0.0334 37 1 -0.4283 4.6108 1.4776 38 1 -0.0154 6.0367 0.4881 39 1 1.9574 6.4392 2.0408 40 1 0.3729 6.6036 2.8415 41 1 1.1808 6.0775 4.9789 42 1 2.1224 4.5932 5.2592 43 1 2.8485 5.9530 4.3693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720442209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:02 Heat of formation + Delta-G solvation = 16.368282 kcal Electronic energy + Delta-G solvation = -20597.245162 eV Core-core repulsion = 17870.340640 eV Total energy + Delta-G solvation = -2726.904522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84294 -36.76388 -33.61339 -33.28308 -31.93586 -29.29236 -28.43194 -26.54456 -26.02935 -23.01394 -22.38650 -21.76573 -21.06169 -19.31140 -17.95074 -16.77236 -15.70867 -15.29616 -14.83475 -14.49836 -14.17344 -13.98200 -13.61037 -13.04765 -12.86082 -12.71622 -12.48306 -12.27821 -11.95321 -11.88434 -11.57975 -11.23528 -11.07956 -10.86068 -10.76658 -10.58684 -10.35590 -10.20258 -10.09164 -9.92217 -9.76259 -9.61775 -9.55353 -9.22112 -8.49000 -7.92690 -7.07452 -6.16922 -4.11114 3.25672 3.35850 3.40180 4.17390 4.38647 4.90951 5.04311 5.13590 5.18845 5.35675 5.43862 5.60099 5.62918 5.66744 5.79062 5.88624 5.93239 6.01928 6.07625 6.13066 6.16949 6.19642 6.29486 6.36679 6.39595 6.49309 6.60316 6.60947 6.72931 6.78418 6.81645 6.90771 6.95305 7.04180 7.25266 7.31550 7.42437 7.59949 7.61529 8.07589 8.18818 8.41857 8.88996 9.50967 10.95375 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.007576 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.420913 B = 3695.151201 C = 3728.442605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C 0.176 3.824 4 H 0.033 0.967 5 C -0.551 4.551 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.492 5.492 14 C 0.035 3.965 15 C -0.115 4.115 16 C 0.104 3.896 17 H 0.038 0.962 18 C 0.064 3.936 19 H 0.059 0.941 20 C -0.097 4.097 21 C -0.112 4.112 22 C 0.066 3.934 23 N -0.547 5.547 24 C 0.033 3.967 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.263 0.737 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 6.987 7.023 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C 0.068 3.932 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.216 5.216 14 C -0.093 4.093 15 C -0.153 4.153 16 C -0.005 4.005 17 H 0.056 0.944 18 C -0.045 4.045 19 H 0.077 0.923 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.062 4.062 23 N -0.272 5.272 24 C -0.115 4.115 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.192 6.654 6.975 13.320 hybrid contribution 1.509 0.240 -1.252 1.975 sum -7.684 6.894 5.723 11.803 Atomic orbital electron populations 1.21719 0.97741 0.98938 1.01473 1.21854 0.93538 0.98790 1.00846 1.19744 0.94049 0.90739 0.88676 0.94891 1.21491 0.90655 1.42074 1.04678 0.90598 1.24908 0.94618 0.93869 0.98830 1.70011 1.11163 1.41883 1.29492 0.87232 0.82200 0.77788 0.84089 1.20768 1.21463 1.17297 1.64862 1.53527 1.00242 1.02979 1.23231 0.99737 0.96158 0.90189 1.22881 1.01450 0.93862 0.97143 1.21580 0.92380 0.91869 0.94630 0.94429 1.20729 1.00203 0.91188 0.92409 0.92316 1.20777 0.97512 0.96972 0.98257 1.21581 0.98789 0.98916 0.95661 1.21910 0.98315 0.92412 0.93516 1.60138 1.46101 1.15713 1.05261 1.22288 0.97916 0.99194 0.92146 0.95067 0.92328 0.94086 0.93024 0.92814 0.92728 0.91803 0.91387 0.92821 0.90447 0.91278 0.92985 0.90639 0.92314 0.95565 0.91433 0.91915 0.91623 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.72 37.15 0.36 -2.26 16 2 C -0.11 -2.42 4.59 -26.74 -0.12 -2.55 16 3 C 0.18 4.03 1.26 -68.86 -0.09 3.94 16 4 H 0.03 0.80 5.78 -51.93 -0.30 0.50 16 5 C -0.55 -14.66 6.88 -34.44 -0.24 -14.89 16 6 H 0.08 2.21 5.81 -52.49 -0.30 1.90 16 7 C 0.08 2.27 5.31 -17.82 -0.09 2.17 16 8 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 9 Si 0.86 20.89 25.81 -169.99 -4.39 16.50 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.73 5.52 56.52 0.31 -5.41 16 13 N -0.49 -10.02 4.66 -219.85 -1.03 -11.04 16 14 C 0.04 0.68 5.31 -1.45 -0.01 0.67 16 15 C -0.11 -1.90 6.07 -24.20 -0.15 -2.05 16 16 C 0.10 1.78 2.88 -67.91 -0.20 1.59 16 17 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 18 C 0.06 1.25 2.01 -70.19 -0.14 1.11 16 19 H 0.06 1.35 5.38 -51.93 -0.28 1.07 16 20 C -0.10 -1.70 5.56 -28.23 -0.16 -1.86 16 21 C -0.11 -1.62 6.23 -26.65 -0.17 -1.79 16 22 C 0.07 0.91 5.54 -4.05 -0.02 0.88 16 23 N -0.55 -8.14 4.18 -235.74 -0.99 -9.12 16 24 C 0.03 0.40 9.36 60.06 0.56 0.96 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.06 7.86 -51.93 -0.41 0.65 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.18 4.95 -51.93 -0.26 0.92 16 29 H 0.05 1.16 6.77 -51.93 -0.35 0.81 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.41 6.06 -51.93 -0.31 1.10 16 32 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 35 H 0.07 1.29 6.90 -51.93 -0.36 0.93 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 40 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.06 0.77 7.62 -51.93 -0.40 0.38 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -28.19 309.17 -9.05 -37.24 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.63 Total: 1.48 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.45 Total: -14.07 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -1.24 Total: -45.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.39 Total: 16.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.19 -9.05 -37.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720442209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.611 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds