Wall clock time and date at job start Mon Mar 30 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47126 * 2 1 4 4 H 1.08998 * 109.47377 * 305.34154 * 3 2 1 5 5 C 1.50705 * 109.46877 * 185.34179 * 3 2 1 6 6 H 1.07996 * 119.99796 * 274.57642 * 5 3 2 7 7 C 1.37874 * 119.99866 * 94.58382 * 5 3 2 8 8 N 1.31524 * 119.99801 * 184.81214 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 4.80739 * 7 5 3 10 10 H 1.48495 * 109.47172 * 84.90844 * 9 7 5 11 11 H 1.48506 * 109.46970 * 204.90912 * 9 7 5 12 12 H 1.48496 * 109.47050 * 324.90441 * 9 7 5 13 13 N 1.46900 * 109.47205 * 65.34382 * 3 2 1 14 14 C 1.48602 * 111.00163 * 69.87033 * 13 3 2 15 15 C 1.55330 * 106.98824 * 126.27147 * 14 13 3 16 16 C 1.53548 * 101.86616 * 22.52138 * 15 14 13 17 17 H 1.09007 * 110.85704 * 78.03181 * 16 15 14 18 18 C 1.45892 * 110.99885 * 188.79365 * 13 3 2 19 19 H 1.08993 * 109.54608 * 325.23738 * 18 13 3 20 20 C 1.51632 * 117.37199 * 90.09643 * 18 13 3 21 21 C 1.53882 * 106.96876 * 178.75223 * 20 18 13 22 22 C 1.52594 * 111.19970 * 304.98147 * 21 20 18 23 23 N 1.45617 * 115.91077 * 206.04265 * 16 15 14 24 24 C 1.46908 * 110.99998 * 299.79155 * 23 16 15 25 25 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46791 * 300.00379 * 1 2 3 27 27 H 1.09007 * 109.46910 * 60.00244 * 1 2 3 28 28 H 1.09006 * 109.46790 * 240.00082 * 2 1 3 29 29 H 1.08998 * 109.47122 * 120.00556 * 2 1 3 30 30 H 0.96992 * 119.99875 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.92701 * 245.60529 * 14 13 3 32 32 H 1.09005 * 109.92522 * 6.94153 * 14 13 3 33 33 H 1.09001 * 110.95283 * 140.66749 * 15 14 13 34 34 H 1.09001 * 110.95422 * 264.34568 * 15 14 13 35 35 H 1.08991 * 109.95422 * 298.12293 * 20 18 13 36 36 H 1.09005 * 109.95228 * 59.30111 * 20 18 13 37 37 H 1.09003 * 109.13398 * 65.42238 * 21 20 18 38 38 H 1.08996 * 109.13460 * 184.59519 * 21 20 18 39 39 H 1.09004 * 109.03103 * 174.24578 * 22 21 20 40 40 H 1.08996 * 109.03071 * 293.15794 * 22 21 20 41 41 H 1.09005 * 109.46643 * 59.99728 * 24 23 16 42 42 H 1.08993 * 109.47281 * 179.97438 * 24 23 16 43 43 H 1.08997 * 109.47151 * 300.00097 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6007 1.9832 -0.8383 5 6 3.5413 1.4444 -0.1323 6 1 4.1608 1.3416 0.7463 7 6 4.1236 1.5776 -1.3749 8 7 5.4293 1.4846 -1.5025 9 14 3.0582 1.8901 -2.8771 10 1 2.7920 3.3457 -3.0010 11 1 3.7637 1.4106 -4.0927 12 1 1.7720 1.1622 -2.7318 13 7 1.6585 2.0967 1.2587 14 6 2.4237 1.5371 2.4031 15 6 3.0931 2.7350 3.1307 16 6 2.2011 3.9068 2.6962 17 1 1.2705 3.9175 3.2639 18 6 1.9438 3.5267 1.2120 19 1 2.8490 3.6991 0.6299 20 6 0.8474 4.4399 0.6990 21 6 1.3863 5.8790 0.7816 22 6 1.8584 6.2112 2.1942 23 7 2.8316 5.2194 2.6927 24 6 3.3079 5.5781 4.0354 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.8390 1.5787 -2.3766 31 1 1.7481 1.0193 3.0840 32 1 3.1873 0.8498 2.0388 33 1 3.0617 2.6013 4.2120 34 1 4.1179 2.8765 2.7871 35 1 0.6092 4.1907 -0.3349 36 1 -0.0424 4.3383 1.3204 37 1 2.2224 5.9876 0.0908 38 1 0.5957 6.5734 0.4975 39 1 2.3250 7.1963 2.1905 40 1 0.9970 6.2289 2.8618 41 1 4.0372 4.8408 4.3712 42 1 3.7748 6.5625 4.0043 43 1 2.4655 5.5969 4.7268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720442212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:10 Heat of formation + Delta-G solvation = 6.937716 kcal Electronic energy + Delta-G solvation = -20637.054342 eV Core-core repulsion = 17909.740880 eV Total energy + Delta-G solvation = -2727.313462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82937 -36.74632 -33.48699 -33.19693 -31.94207 -29.23209 -28.33079 -26.51786 -26.15834 -22.81325 -22.59718 -21.32567 -20.70731 -19.25440 -18.50371 -16.99347 -15.71207 -14.94831 -14.75472 -14.48135 -14.16847 -13.90842 -13.55341 -13.18896 -12.87968 -12.70253 -12.44516 -12.09453 -11.98365 -11.85449 -11.68090 -11.31931 -10.94437 -10.87062 -10.77693 -10.55057 -10.46941 -10.35694 -10.13586 -9.91964 -9.74702 -9.56316 -9.46807 -9.13701 -8.52098 -8.08351 -7.11246 -6.08624 -4.08755 3.28271 3.36840 3.39612 4.14822 4.41349 4.83589 5.09336 5.19616 5.29701 5.32547 5.47711 5.56571 5.60276 5.61678 5.73698 5.83618 5.96307 6.01742 6.05213 6.06483 6.11845 6.15599 6.27225 6.31990 6.33727 6.52834 6.54165 6.63068 6.66034 6.78178 6.79327 6.92507 7.05413 7.07266 7.26412 7.29485 7.31061 7.50659 7.64525 8.09029 8.25850 8.51107 8.96893 9.56044 11.03984 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.008868 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.768601 B = 3156.490156 C = 3388.498944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.173 3.827 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.896 5.896 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.514 5.514 14 C 0.047 3.953 15 C -0.124 4.124 16 C 0.068 3.932 17 H 0.045 0.955 18 C 0.079 3.921 19 H 0.078 0.922 20 C -0.103 4.103 21 C -0.116 4.116 22 C 0.057 3.943 23 N -0.519 5.519 24 C 0.024 3.976 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.263 0.737 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 6.214 7.542 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.066 3.934 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.696 3.304 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.237 5.237 14 C -0.081 4.081 15 C -0.162 4.162 16 C -0.041 4.041 17 H 0.063 0.937 18 C -0.031 4.031 19 H 0.095 0.905 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.071 4.071 23 N -0.243 5.243 24 C -0.124 4.124 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.944 6.117 7.139 12.308 hybrid contribution -0.191 0.370 -0.517 0.664 sum -8.136 6.486 6.622 12.333 Atomic orbital electron populations 1.21758 0.97990 0.99087 1.01260 1.21676 0.93266 0.98907 1.00599 1.19841 0.94511 0.90977 0.88085 0.94392 1.21621 0.90485 1.50759 0.94944 0.90124 1.25014 0.94628 0.94216 0.98616 1.69919 1.09606 1.49650 1.24137 0.86996 0.81365 0.79170 0.82917 1.20138 1.21635 1.18694 1.63656 1.53406 1.01812 1.04855 1.23042 0.96222 0.96510 0.92328 1.22523 1.00216 0.94791 0.98716 1.22489 0.95262 0.88315 0.98013 0.93691 1.21881 0.98082 0.88761 0.94332 0.90460 1.21353 0.98055 0.93526 1.01178 1.21589 1.00608 0.96875 0.96348 1.22100 0.93483 0.95403 0.96144 1.62568 1.36511 1.02080 1.23102 1.22358 0.99318 1.01506 0.89253 0.94987 0.92281 0.94308 0.93065 0.93078 0.92742 0.92781 0.90373 0.92652 0.90391 0.92057 0.92409 0.91202 0.91837 0.91287 0.95497 0.91224 0.91896 0.96230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.25 16 2 C -0.11 -2.25 5.37 -26.73 -0.14 -2.39 16 3 C 0.17 3.98 1.31 -68.87 -0.09 3.89 16 4 H 0.04 0.92 5.27 -51.93 -0.27 0.65 16 5 C -0.54 -14.42 6.98 -34.44 -0.24 -14.66 16 6 H 0.08 2.34 6.13 -52.49 -0.32 2.02 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 8 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.22 6.83 56.52 0.39 -5.83 16 13 N -0.51 -10.52 4.56 -217.26 -0.99 -11.51 16 14 C 0.05 0.91 5.46 -1.65 -0.01 0.90 16 15 C -0.12 -2.18 5.75 -25.21 -0.14 -2.33 16 16 C 0.07 1.18 2.11 -66.88 -0.14 1.04 16 17 H 0.05 0.77 8.09 -51.92 -0.42 0.35 16 18 C 0.08 1.56 1.72 -67.71 -0.12 1.44 16 19 H 0.08 1.85 6.88 -51.93 -0.36 1.50 16 20 C -0.10 -1.76 6.01 -26.96 -0.16 -1.92 16 21 C -0.12 -1.72 5.99 -26.48 -0.16 -1.88 16 22 C 0.06 0.80 5.36 -3.63 -0.02 0.78 16 23 N -0.52 -8.34 4.96 -233.66 -1.16 -9.50 16 24 C 0.02 0.32 9.40 60.07 0.56 0.88 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.06 7.12 -51.93 -0.37 0.69 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.69 5.17 -51.93 -0.27 1.42 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.07 0.92 7.44 -51.93 -0.39 0.53 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -28.55 318.37 -9.43 -37.98 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.87 Total: 1.95 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.39 Total: -14.40 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -1.38 Total: -47.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.55 -9.43 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720442212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.920 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds