Wall clock time and date at job start Mon Mar 30 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 112.88351 * 2 1 4 4 C 1.53938 * 113.65779 * 131.33145 * 2 1 3 5 5 H 1.08991 * 113.73332 * 202.54401 * 4 2 1 6 6 N 1.46905 * 113.73128 * 333.72245 * 4 2 1 7 7 C 1.46904 * 110.99709 * 204.99689 * 6 4 2 8 8 C 1.52992 * 109.47101 * 180.02562 * 7 6 4 9 9 C 1.50693 * 109.47389 * 179.97438 * 8 7 6 10 10 H 1.08009 * 120.00140 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00541 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47182 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.46864 * 120.00303 * 13 11 9 16 16 H 1.48498 * 109.46960 * 240.00364 * 13 11 9 17 17 C 1.53288 * 86.34495 * 88.07684 * 4 2 1 18 18 H 1.08990 * 111.66595 * 274.84341 * 17 4 2 19 19 C 1.50816 * 115.36136 * 146.29594 * 17 4 2 20 20 C 1.51831 * 113.73696 * 288.80648 * 19 17 4 21 21 C 1.52635 * 110.80475 * 315.26311 * 20 19 17 22 22 N 1.46812 * 108.93683 * 62.87807 * 21 20 19 23 23 C 1.46703 * 111.05096 * 294.67066 * 22 21 20 24 24 H 1.08999 * 113.74505 * 276.01042 * 23 22 21 25 25 H 1.09001 * 109.47002 * 69.66657 * 1 2 3 26 26 H 1.08993 * 109.46955 * 189.67094 * 1 2 3 27 27 H 1.09000 * 109.47050 * 309.66923 * 1 2 3 28 28 H 1.08998 * 109.47148 * 50.32879 * 3 2 1 29 29 H 1.08999 * 109.47061 * 170.32762 * 3 2 1 30 30 H 1.09001 * 109.46641 * 290.33209 * 3 2 1 31 31 H 1.00889 * 111.00182 * 328.94949 * 6 4 2 32 32 H 1.09001 * 109.46923 * 300.00082 * 7 6 4 33 33 H 1.08997 * 109.47285 * 59.99601 * 7 6 4 34 34 H 1.09001 * 109.47135 * 299.99751 * 8 7 6 35 35 H 1.08997 * 109.47541 * 59.99557 * 8 7 6 36 36 H 0.97002 * 119.99708 * 180.02562 * 12 11 9 37 37 H 1.09002 * 108.62699 * 49.90395 * 19 17 4 38 38 H 1.08993 * 108.63291 * 167.70635 * 19 17 4 39 39 H 1.09003 * 109.20938 * 75.60454 * 20 19 17 40 40 H 1.08999 * 109.20983 * 194.96698 * 20 19 17 41 41 H 1.08994 * 109.56133 * 182.71268 * 21 20 19 42 42 H 1.08998 * 109.56105 * 303.04551 * 21 20 19 43 43 H 1.00900 * 111.00023 * 170.81418 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1250 1.4096 0.0000 4 6 2.1478 -0.9312 1.0588 5 1 3.1679 -0.6651 1.3355 6 7 1.2805 -1.1613 2.2220 7 6 2.0722 -1.5213 3.4059 8 6 1.1365 -1.7533 4.5939 9 6 1.9486 -2.1232 5.8082 10 1 3.0246 -2.1870 5.7394 11 6 1.3181 -2.3803 7.0072 12 7 0.0079 -2.3032 7.0908 13 14 2.3248 -2.8396 8.5122 14 1 3.7664 -2.8579 8.1567 15 1 2.0929 -1.8408 9.5863 16 1 1.9151 -4.1846 8.9901 17 6 2.0615 -2.0337 -0.0027 18 1 1.0809 -2.5093 -0.0102 19 6 3.1693 -3.0564 0.0367 20 6 4.5131 -2.5199 -0.4231 21 6 4.3590 -1.6894 -1.6945 22 7 3.5159 -0.5235 -1.4027 23 6 2.1494 -0.9336 -1.0612 24 1 1.5118 -1.1016 -1.9292 25 1 -0.3633 0.3571 -0.9636 26 1 -0.3633 -1.0130 0.1726 27 1 -0.3633 0.6560 0.7910 28 1 1.6619 1.9994 0.7910 29 1 3.1996 1.3504 0.1727 30 1 1.9373 1.8831 -0.9637 31 1 0.7009 -0.3562 2.4058 32 1 2.6346 -2.4328 3.2034 33 1 2.7639 -0.7122 3.6402 34 1 0.5738 -0.8420 4.7965 35 1 0.4451 -2.5626 4.3593 36 1 -0.4356 -2.4837 7.9344 37 1 3.2710 -3.4203 1.0592 38 1 2.8920 -3.8949 -0.6021 39 1 4.9384 -1.8963 0.3633 40 1 5.1844 -3.3556 -0.6206 41 1 5.3396 -1.3551 -2.0331 42 1 3.8897 -2.2939 -2.4706 43 1 3.5145 0.1244 -2.1762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925635206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:51 Heat of formation + Delta-G solvation = 3.581479 kcal Electronic energy + Delta-G solvation = -19580.867587 eV Core-core repulsion = 16853.408588 eV Total energy + Delta-G solvation = -2727.458999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80857 -36.00068 -34.44011 -32.77179 -32.02856 -29.91237 -28.80423 -27.28117 -25.34292 -24.09228 -22.94366 -21.87073 -20.46305 -19.12778 -17.54084 -16.87145 -16.18896 -15.17373 -14.93541 -14.60270 -14.39495 -14.27366 -13.71201 -13.61255 -13.31201 -12.84752 -12.62197 -12.33848 -12.21928 -11.94909 -11.84747 -11.41572 -11.11805 -11.05208 -10.90953 -10.89377 -10.64369 -10.43961 -10.19191 -10.14474 -9.93469 -9.56625 -9.22438 -9.05719 -8.39666 -8.31111 -7.63809 -5.95746 -3.97697 3.33679 3.40905 3.45288 4.02299 4.47979 4.56764 4.64671 4.80684 4.91226 5.00703 5.14745 5.24301 5.39092 5.40399 5.45407 5.48070 5.62103 5.73330 5.75862 5.79696 5.88742 6.00443 6.07618 6.11868 6.17879 6.22790 6.30778 6.32604 6.40101 6.49966 6.54696 6.64776 6.73616 7.04473 7.09071 7.33431 7.63500 7.82160 7.91666 8.08245 8.16767 8.50090 9.10040 9.65870 11.15783 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.004862 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.536201 B = 5757.070337 C = 6298.330659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C -0.126 4.126 4 C 0.087 3.913 5 H 0.074 0.926 6 N -0.680 5.680 7 C 0.068 3.932 8 C 0.025 3.975 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.088 4.088 18 H 0.092 0.908 19 C -0.107 4.107 20 C -0.114 4.114 21 C 0.061 3.939 22 N -0.667 5.667 23 C 0.069 3.931 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.335 0.665 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.024 0.976 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 3.727 -19.268 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.183 4.183 4 C -0.024 4.024 5 H 0.092 0.908 6 N -0.311 5.311 7 C -0.060 4.060 8 C -0.012 4.012 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.108 4.108 18 H 0.110 0.890 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.068 4.068 22 N -0.297 5.297 23 C -0.041 4.041 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.241 3.082 -18.635 19.602 hybrid contribution 0.520 0.287 0.271 0.653 sum 5.762 3.370 -18.364 19.539 Atomic orbital electron populations 1.21517 0.92991 1.02956 1.00866 1.22266 0.95154 0.94617 0.96471 1.21564 1.01540 0.94805 1.00418 1.22949 0.95792 0.94116 0.89499 0.90839 1.60704 1.23475 1.41795 1.05125 1.22154 0.95882 0.98003 0.90000 1.19066 0.94546 0.97256 0.90372 1.21234 0.93318 1.46583 0.94614 0.92796 1.24999 0.94856 0.95629 0.98888 1.69987 1.07804 1.49773 1.25780 0.86554 0.80435 0.78070 0.83050 1.19789 1.21062 1.21010 1.21998 0.99369 0.94158 0.95241 0.88962 1.20638 0.94198 0.97713 1.01933 1.21215 0.97456 0.98896 0.97603 1.21747 0.96768 0.91673 0.96571 1.60243 1.09909 1.15271 1.44282 1.22505 0.88951 0.97146 0.95523 0.93184 0.93278 0.91308 0.92220 0.93453 0.91461 0.93551 0.84576 0.92662 0.96911 0.96942 0.95774 0.93121 0.91252 0.93117 0.91374 0.91996 0.91094 0.95454 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.02 37.16 0.30 -1.22 16 2 C -0.08 -1.04 1.25 -153.37 -0.19 -1.24 16 3 C -0.13 -1.48 8.59 37.16 0.32 -1.16 16 4 C 0.09 1.32 2.97 -67.07 -0.20 1.12 16 5 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 6 N -0.68 -12.35 5.99 -106.05 -0.64 -12.98 16 7 C 0.07 1.48 5.47 -3.83 -0.02 1.46 16 8 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C -0.09 -1.20 3.28 -91.64 -0.30 -1.50 16 18 H 0.09 1.35 7.26 -51.93 -0.38 0.97 16 19 C -0.11 -1.40 5.57 -28.42 -0.16 -1.56 16 20 C -0.11 -1.29 5.97 -27.51 -0.16 -1.46 16 21 C 0.06 0.61 6.51 -4.06 -0.03 0.58 16 22 N -0.67 -6.97 5.14 -106.45 -0.55 -7.51 16 23 C 0.07 0.81 4.06 -67.17 -0.27 0.53 16 24 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.90 6.93 -51.93 -0.36 0.54 16 27 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.34 6.00 7.51 -39.30 -0.30 5.71 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.26 8.13 -51.93 -0.42 -0.16 16 43 H 0.34 2.95 8.89 -39.29 -0.35 2.61 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -29.86 329.98 -9.78 -39.64 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.01 Total: 3.17 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.27 Total: -17.67 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.45 Total: -47.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.86 -9.78 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925635206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.223 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds