Wall clock time and date at job start Mon Mar 30 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 110.06726 * 2 1 4 4 N 1.48125 * 110.00075 * 238.70254 * 2 1 3 5 5 C 1.48535 * 105.82304 * 266.08017 * 4 2 1 6 6 C 1.54941 * 103.22615 * 320.73321 * 5 4 2 7 7 C 1.53994 * 109.91815 * 121.20344 * 2 1 3 8 8 H 1.09003 * 110.30677 * 359.10829 * 7 2 1 9 9 N 1.46899 * 110.31014 * 237.04890 * 7 2 1 10 10 C 1.46896 * 111.00196 * 166.16006 * 9 7 2 11 11 H 1.09003 * 110.54045 * 323.83169 * 10 9 7 12 12 C 1.54268 * 110.49251 * 86.45253 * 10 9 7 13 13 C 1.53864 * 106.60216 * 142.29013 * 12 10 9 14 14 C 1.54271 * 106.60169 * 359.97438 * 13 12 10 15 15 H 1.08998 * 110.48806 * 95.20025 * 14 13 12 16 16 C 1.50702 * 110.48692 * 217.71539 * 14 13 12 17 17 H 1.07998 * 119.99992 * 116.48061 * 16 14 13 18 18 C 1.37868 * 119.99627 * 296.75273 * 16 14 13 19 19 N 1.31513 * 120.00642 * 359.73055 * 18 16 14 20 20 Si 1.86801 * 119.99845 * 179.72675 * 18 16 14 21 21 H 1.48496 * 109.47202 * 60.00201 * 20 18 16 22 22 H 1.48499 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47249 * 300.00130 * 20 18 16 24 24 C 1.54897 * 104.30902 * 336.45689 * 14 13 12 25 25 H 1.09008 * 109.47465 * 298.79771 * 1 2 3 26 26 H 1.09000 * 109.47331 * 58.79937 * 1 2 3 27 27 H 1.09005 * 109.47449 * 178.79221 * 1 2 3 28 28 H 1.08997 * 109.47457 * 175.08826 * 3 2 1 29 29 H 1.09002 * 109.46621 * 295.08802 * 3 2 1 30 30 H 1.08997 * 109.46971 * 55.08544 * 3 2 1 31 31 H 1.00900 * 110.95151 * 26.56170 * 4 2 1 32 32 H 1.09001 * 110.66942 * 202.29935 * 5 4 2 33 33 H 1.09001 * 110.66728 * 79.16990 * 5 4 2 34 34 H 1.08997 * 110.72093 * 279.05837 * 6 5 4 35 35 H 1.08996 * 110.87367 * 155.84476 * 6 5 4 36 36 H 1.00895 * 111.00547 * 42.19983 * 9 7 2 37 37 H 1.08999 * 110.02976 * 22.99580 * 12 10 9 38 38 H 1.09001 * 110.06539 * 261.59569 * 12 10 9 39 39 H 1.09002 * 110.03451 * 240.71444 * 13 12 10 40 40 H 1.08998 * 110.03382 * 119.28296 * 13 12 10 41 41 H 0.97002 * 120.00360 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.75305 * 156.18625 * 24 14 13 43 43 H 1.08997 * 110.75484 * 279.55758 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0549 1.4372 0.0000 4 7 2.0365 -0.7231 -1.1894 5 6 2.2669 -2.1217 -0.7454 6 6 2.8530 -1.9496 0.6785 7 6 2.0545 -0.7501 1.2384 8 1 1.2224 -1.1011 1.8487 9 7 2.9327 0.1226 2.0290 10 6 3.1778 -0.4449 3.3615 11 1 2.2847 -0.9473 3.7334 12 6 4.3701 -1.4229 3.3211 13 6 5.1441 -1.2271 4.6364 14 6 4.3956 -0.1364 5.4301 15 1 3.7006 -0.5887 6.1377 16 6 5.3730 0.7564 6.1502 17 1 5.4356 1.8042 5.8961 18 6 6.1912 0.2344 7.1294 19 7 6.1150 -1.0416 7.4389 20 14 7.4081 1.3395 8.0167 21 1 6.6742 2.4305 8.7066 22 1 8.1639 0.5419 9.0157 23 1 8.3543 1.9243 7.0328 24 6 3.6256 0.6629 4.3496 25 1 -0.3634 0.4951 0.9006 26 1 -0.3634 0.5324 -0.8790 27 1 -0.3634 -1.0275 -0.0217 28 1 3.1413 1.4272 0.0880 29 1 1.7702 1.9279 -0.9308 30 1 1.6271 1.9802 0.8427 31 1 1.3679 -0.6889 -1.9443 32 1 2.9833 -2.6197 -1.3987 33 1 1.3277 -2.6739 -0.7107 34 1 3.9168 -1.7169 0.6321 35 1 2.6806 -2.8422 1.2799 36 1 2.5507 1.0539 2.0973 37 1 5.0131 -1.1928 2.4715 38 1 4.0098 -2.4492 3.2491 39 1 6.1629 -0.9019 4.4253 40 1 5.1588 -2.1581 5.2031 41 1 6.6909 -1.4089 8.1276 42 1 2.7627 1.1675 4.7842 43 1 4.2838 1.3774 3.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925682474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:05 Heat of formation + Delta-G solvation = -9.030359 kcal Electronic energy + Delta-G solvation = -19587.129748 eV Core-core repulsion = 16859.123858 eV Total energy + Delta-G solvation = -2728.005890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73706 -37.22157 -33.77302 -32.45923 -31.79767 -28.82451 -28.02506 -27.43309 -26.05898 -24.33844 -23.49230 -20.91395 -19.48366 -19.08801 -18.66709 -16.34776 -16.15382 -15.50065 -15.27494 -14.79287 -14.54450 -14.07202 -13.39115 -13.26238 -12.99790 -12.62266 -12.54302 -12.27441 -11.95378 -11.72243 -11.51212 -11.29226 -11.19664 -11.07538 -10.94746 -10.72785 -10.55789 -10.42522 -10.19295 -9.95716 -9.81265 -9.42426 -9.03610 -8.65149 -8.60923 -8.30837 -8.01414 -5.94301 -3.96610 3.36291 3.40722 3.43507 4.09169 4.40495 4.50950 4.53593 4.84576 4.99088 5.12628 5.24894 5.30553 5.37906 5.45351 5.59647 5.62047 5.73352 5.75373 5.79106 5.82620 5.88532 6.00173 6.05790 6.11500 6.32292 6.41990 6.46333 6.60906 6.73634 6.81595 6.86765 6.93663 7.06781 7.24184 7.30091 7.44016 7.65241 7.75476 7.82922 7.99338 8.09847 8.53927 9.06027 9.66953 11.15492 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.004568 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.316866 B = 6127.816079 C = 6426.472607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 C -0.128 4.128 4 N -0.656 5.656 5 C 0.037 3.963 6 C -0.113 4.113 7 C 0.087 3.913 8 H 0.041 0.959 9 N -0.671 5.671 10 C 0.078 3.922 11 H 0.035 0.965 12 C -0.111 4.111 13 C -0.096 4.096 14 C 0.051 3.949 15 H 0.026 0.974 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.331 0.669 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.339 0.661 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.259 0.741 42 H 0.041 0.959 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -0.513 -15.045 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 C -0.186 4.186 4 N -0.285 5.285 5 C -0.092 4.092 6 C -0.151 4.151 7 C -0.024 4.024 8 H 0.058 0.942 9 N -0.304 5.304 10 C -0.031 4.031 11 H 0.053 0.947 12 C -0.149 4.149 13 C -0.135 4.135 14 C 0.032 3.968 15 H 0.044 0.956 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.153 4.153 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.073 -0.669 -15.153 17.674 hybrid contribution -1.192 0.204 1.087 1.626 sum -10.265 -0.465 -14.067 17.420 Atomic orbital electron populations 1.22492 0.96387 1.01672 1.02496 1.21779 0.91856 0.95742 0.90515 1.21675 1.03409 0.93209 1.00335 1.63215 1.47458 1.10688 1.07131 1.23005 0.99100 0.89984 0.97105 1.22607 1.01839 0.96796 0.93864 1.22364 0.93419 0.93529 0.93115 0.94154 1.60889 1.48694 1.04907 1.15899 1.22572 0.96867 0.96769 0.86868 0.94741 1.22288 0.96546 0.96164 0.99915 1.22057 0.98636 1.00101 0.92665 1.19369 0.93675 0.92336 0.91373 0.95613 1.21130 1.19723 0.95170 1.19011 0.92777 1.24970 0.97223 0.94931 0.96823 1.69965 1.39310 1.11974 1.31699 0.86726 0.81486 0.80660 0.79502 1.20387 1.21415 1.20290 1.22760 0.98998 0.96869 0.96686 0.91922 0.92252 0.92872 0.90010 0.93185 0.92859 0.85315 0.90196 0.94692 0.89213 0.91708 0.83968 0.92126 0.94411 0.93086 0.93076 0.93136 0.93977 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 8.26 37.15 0.31 -1.31 16 2 C 0.09 1.03 1.16 -130.41 -0.15 0.88 16 3 C -0.13 -1.45 7.57 37.16 0.28 -1.17 16 4 N -0.66 -7.18 7.03 -96.32 -0.68 -7.86 16 5 C 0.04 0.40 7.54 -1.89 -0.01 0.39 16 6 C -0.11 -1.46 5.51 -24.87 -0.14 -1.60 16 7 C 0.09 1.15 2.90 -66.36 -0.19 0.96 16 8 H 0.04 0.56 7.27 -51.93 -0.38 0.18 16 9 N -0.67 -10.20 5.10 -96.50 -0.49 -10.69 16 10 C 0.08 1.41 3.14 -65.96 -0.21 1.20 16 11 H 0.03 0.63 7.66 -51.93 -0.40 0.23 16 12 C -0.11 -2.16 5.17 -25.62 -0.13 -2.29 16 13 C -0.10 -2.29 5.50 -25.62 -0.14 -2.43 16 14 C 0.05 1.29 2.75 -90.11 -0.25 1.04 16 15 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 16 C -0.51 -14.24 8.38 -34.44 -0.29 -14.53 16 17 H 0.05 1.48 7.77 -52.49 -0.41 1.08 16 18 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 19 N -0.89 -26.00 12.49 55.43 0.69 -25.31 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.12 -2.38 5.71 -24.64 -0.14 -2.52 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.09 7.46 -51.93 -0.39 0.70 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.56 7.09 -51.93 -0.37 0.19 16 31 H 0.33 3.02 8.44 -39.29 -0.33 2.69 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 1.34 7.23 -51.93 -0.38 0.97 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.34 4.86 5.94 -39.29 -0.23 4.62 16 37 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 38 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.05 1.30 7.83 -51.93 -0.41 0.90 16 40 H 0.05 1.30 8.00 -51.93 -0.42 0.88 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -28.45 324.27 -9.64 -38.08 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.87 Total: 4.05 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.16 Total: -19.72 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.48 Total: -43.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.45 -9.64 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925682474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.053 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds