Wall clock time and date at job start Mon Mar 30 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 110.06726 * 2 1 4 4 N 1.48125 * 110.00075 * 238.70254 * 2 1 3 5 5 C 1.48535 * 105.82304 * 266.08017 * 4 2 1 6 6 C 1.54941 * 103.22615 * 320.73321 * 5 4 2 7 7 C 1.53994 * 109.91815 * 121.20344 * 2 1 3 8 8 H 1.09003 * 110.30677 * 359.10829 * 7 2 1 9 9 N 1.46899 * 110.31014 * 237.04890 * 7 2 1 10 10 C 1.46896 * 111.00196 * 166.16006 * 9 7 2 11 11 H 1.09003 * 110.54045 * 323.83169 * 10 9 7 12 12 C 1.54268 * 110.49251 * 86.45253 * 10 9 7 13 13 C 1.53864 * 106.60216 * 142.29013 * 12 10 9 14 14 C 1.54271 * 106.60169 * 359.97438 * 13 12 10 15 15 H 1.08998 * 110.48806 * 95.20025 * 14 13 12 16 16 C 1.50702 * 110.48692 * 217.71539 * 14 13 12 17 17 H 1.07998 * 119.99992 * 116.48061 * 16 14 13 18 18 C 1.37868 * 119.99627 * 296.75273 * 16 14 13 19 19 N 1.31513 * 120.00642 * 359.73055 * 18 16 14 20 20 Si 1.86801 * 119.99845 * 179.72675 * 18 16 14 21 21 H 1.48496 * 109.47202 * 60.00201 * 20 18 16 22 22 H 1.48499 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47249 * 300.00130 * 20 18 16 24 24 C 1.54897 * 104.30902 * 336.45689 * 14 13 12 25 25 H 1.09008 * 109.47465 * 298.79771 * 1 2 3 26 26 H 1.09000 * 109.47331 * 58.79937 * 1 2 3 27 27 H 1.09005 * 109.47449 * 178.79221 * 1 2 3 28 28 H 1.08997 * 109.47457 * 175.08826 * 3 2 1 29 29 H 1.09002 * 109.46621 * 295.08802 * 3 2 1 30 30 H 1.08997 * 109.46971 * 55.08544 * 3 2 1 31 31 H 1.00900 * 110.95151 * 26.56170 * 4 2 1 32 32 H 1.09001 * 110.66942 * 202.29935 * 5 4 2 33 33 H 1.09001 * 110.66728 * 79.16990 * 5 4 2 34 34 H 1.08997 * 110.72093 * 279.05837 * 6 5 4 35 35 H 1.08996 * 110.87367 * 155.84476 * 6 5 4 36 36 H 1.00895 * 111.00547 * 42.19983 * 9 7 2 37 37 H 1.08999 * 110.02976 * 22.99580 * 12 10 9 38 38 H 1.09001 * 110.06539 * 261.59569 * 12 10 9 39 39 H 1.09002 * 110.03451 * 240.71444 * 13 12 10 40 40 H 1.08998 * 110.03382 * 119.28296 * 13 12 10 41 41 H 0.97002 * 120.00360 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.75305 * 156.18625 * 24 14 13 43 43 H 1.08997 * 110.75484 * 279.55758 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0549 1.4372 0.0000 4 7 2.0365 -0.7231 -1.1894 5 6 2.2669 -2.1217 -0.7454 6 6 2.8530 -1.9496 0.6785 7 6 2.0545 -0.7501 1.2384 8 1 1.2224 -1.1011 1.8487 9 7 2.9327 0.1226 2.0290 10 6 3.1778 -0.4449 3.3615 11 1 2.2847 -0.9473 3.7334 12 6 4.3701 -1.4229 3.3211 13 6 5.1441 -1.2271 4.6364 14 6 4.3956 -0.1364 5.4301 15 1 3.7006 -0.5887 6.1377 16 6 5.3730 0.7564 6.1502 17 1 5.4356 1.8042 5.8961 18 6 6.1912 0.2344 7.1294 19 7 6.1150 -1.0416 7.4389 20 14 7.4081 1.3395 8.0167 21 1 6.6742 2.4305 8.7066 22 1 8.1639 0.5419 9.0157 23 1 8.3543 1.9243 7.0328 24 6 3.6256 0.6629 4.3496 25 1 -0.3634 0.4951 0.9006 26 1 -0.3634 0.5324 -0.8790 27 1 -0.3634 -1.0275 -0.0217 28 1 3.1413 1.4272 0.0880 29 1 1.7702 1.9279 -0.9308 30 1 1.6271 1.9802 0.8427 31 1 1.3679 -0.6889 -1.9443 32 1 2.9833 -2.6197 -1.3987 33 1 1.3277 -2.6739 -0.7107 34 1 3.9168 -1.7169 0.6321 35 1 2.6806 -2.8422 1.2799 36 1 2.5507 1.0539 2.0973 37 1 5.0131 -1.1928 2.4715 38 1 4.0098 -2.4492 3.2491 39 1 6.1629 -0.9019 4.4253 40 1 5.1588 -2.1581 5.2031 41 1 6.6909 -1.4089 8.1276 42 1 2.7627 1.1675 4.7842 43 1 4.2838 1.3774 3.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925682474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:04 Heat of formation + Delta-G solvation = -27.238321 kcal Electronic energy + Delta-G solvation = -19587.919305 eV Core-core repulsion = 16859.123858 eV Total energy + Delta-G solvation = -2728.795446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76072 -38.81584 -35.36154 -33.80871 -33.17655 -30.03447 -29.86847 -28.35356 -27.49703 -25.77133 -25.01232 -21.93525 -21.12661 -20.71864 -19.84982 -18.29405 -17.14282 -16.71248 -16.63850 -16.47738 -16.07252 -15.42319 -14.57907 -14.34144 -14.16150 -14.05369 -13.91118 -13.70654 -13.15232 -13.03770 -12.84479 -12.63425 -12.60435 -12.36468 -12.22987 -12.17044 -12.09709 -11.92559 -11.58600 -11.57447 -11.31835 -11.29336 -10.88929 -10.72967 -10.45604 -9.43973 -9.25560 -8.10488 -6.20081 1.41677 1.43459 1.50816 2.44624 3.20378 3.22054 3.26061 3.62128 3.91923 3.99475 4.10890 4.16445 4.28030 4.33551 4.38399 4.45540 4.67373 4.68023 4.72048 4.84613 4.87994 4.94573 5.00103 5.00533 5.07604 5.10283 5.15351 5.17192 5.21434 5.28294 5.33395 5.46499 5.53211 5.56036 5.68397 5.92135 5.94814 6.00315 6.29827 6.42209 6.55340 6.58599 6.91115 7.47226 8.98601 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.004568 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.316866 B = 6127.816079 C = 6426.472607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 C -0.126 4.126 4 N -0.665 5.665 5 C 0.044 3.956 6 C -0.116 4.116 7 C 0.083 3.917 8 H 0.041 0.959 9 N -0.670 5.670 10 C 0.094 3.906 11 H 0.038 0.962 12 C -0.097 4.097 13 C -0.087 4.087 14 C 0.041 3.959 15 H -0.004 1.004 16 C -0.532 4.532 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.344 0.656 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.346 0.654 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 0.196 -16.543 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 C -0.184 4.184 4 N -0.295 5.295 5 C -0.085 4.085 6 C -0.155 4.155 7 C -0.028 4.028 8 H 0.059 0.941 9 N -0.304 5.304 10 C -0.015 4.015 11 H 0.056 0.944 12 C -0.135 4.135 13 C -0.126 4.126 14 C 0.022 3.978 15 H 0.014 0.986 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.142 4.142 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.195 0.054 -16.673 19.542 hybrid contribution -0.849 -0.030 1.546 1.764 sum -11.044 0.024 -15.127 18.729 Atomic orbital electron populations 1.22429 0.94642 1.02198 1.03222 1.21730 0.93084 0.95223 0.89533 1.21636 1.01896 0.93637 1.01258 1.63183 1.48221 1.10724 1.07418 1.22961 0.99814 0.90188 0.95556 1.22588 1.00600 0.96692 0.95608 1.22472 0.93055 0.93576 0.93710 0.94134 1.60812 1.49936 1.05560 1.14082 1.22267 0.96141 0.95231 0.87885 0.94421 1.22127 0.96682 0.97576 0.97146 1.21858 0.97787 0.98344 0.94572 1.19373 0.93369 0.92977 0.92109 0.98595 1.21523 1.20396 0.95541 1.19536 0.92843 1.25771 0.99039 0.96268 0.97691 1.70097 1.40181 1.13584 1.32235 0.85696 0.79203 0.78930 0.78346 1.19479 1.21067 1.19674 1.22576 0.98702 0.97023 0.95901 0.91987 0.90735 0.92495 0.92259 0.92025 0.92230 0.83893 0.89607 0.93131 0.91397 0.91754 0.83151 0.91885 0.93000 0.95647 0.95557 0.93190 0.92834 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 8.26 71.98 0.59 -2.00 16 2 C 0.10 1.90 1.16 3.63 0.00 1.90 16 3 C -0.13 -2.58 7.57 71.98 0.55 -2.03 16 4 N -0.67 -12.82 7.03 -458.65 -3.22 -16.04 16 5 C 0.04 0.84 7.54 86.65 0.65 1.49 16 6 C -0.12 -2.85 5.51 31.80 0.18 -2.67 16 7 C 0.08 2.03 2.90 45.79 0.13 2.16 16 8 H 0.04 1.02 7.27 -2.39 -0.02 1.00 16 9 N -0.67 -19.44 5.10 -459.22 -2.34 -21.78 16 10 C 0.09 3.32 3.14 46.05 0.14 3.47 16 11 H 0.04 1.33 7.66 -2.39 -0.02 1.31 16 12 C -0.10 -3.77 5.17 31.32 0.16 -3.60 16 13 C -0.09 -4.28 5.50 31.32 0.17 -4.11 16 14 C 0.04 2.10 2.75 -10.46 -0.03 2.07 16 15 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 16 C -0.53 -30.12 8.38 25.60 0.21 -29.91 16 17 H 0.05 2.96 7.77 -2.91 -0.02 2.93 16 18 C 0.01 0.62 5.34 84.65 0.45 1.07 16 19 N -0.92 -55.16 12.49 21.44 0.27 -54.89 16 20 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.10 -4.28 5.71 31.95 0.18 -4.10 16 25 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.49 7.46 -2.39 -0.02 1.47 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.12 7.09 -2.39 -0.02 1.11 16 31 H 0.34 5.18 8.44 -89.69 -0.76 4.43 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.97 7.23 -2.39 -0.02 1.95 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.35 9.32 5.94 -89.70 -0.53 8.79 16 37 H 0.06 2.42 7.44 -2.39 -0.02 2.40 16 38 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.02 1.33 7.83 -2.39 -0.02 1.31 16 40 H 0.03 1.37 8.00 -2.39 -0.02 1.35 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 Total: -1.00 -61.77 324.27 -0.18 -61.96 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.32 Total: 20.37 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.40 Total: -36.27 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -5.30 Total: -92.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -61.77 -0.18 -61.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925682474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.717 kcal (2) G-P(sol) polarization free energy of solvation -61.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds