Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.90579 * 2 1 4 4 N 1.47904 * 109.91224 * 238.90092 * 2 1 3 5 5 C 1.48816 * 105.67283 * 215.45121 * 4 2 1 6 6 C 1.54936 * 103.34817 * 38.97832 * 5 4 2 7 7 C 1.53992 * 109.91676 * 121.10677 * 2 1 3 8 8 H 1.08998 * 110.30483 * 239.59152 * 7 2 1 9 9 N 1.46897 * 110.31048 * 1.65802 * 7 2 1 10 10 C 1.46900 * 111.00009 * 195.26721 * 9 7 2 11 11 H 1.08993 * 110.01787 * 325.06506 * 10 9 7 12 12 C 1.53876 * 110.03344 * 86.45562 * 10 9 7 13 13 C 1.54261 * 106.59972 * 119.28353 * 12 10 9 14 14 C 1.54888 * 104.19836 * 23.61044 * 13 12 10 15 15 H 1.08999 * 110.75540 * 80.37085 * 14 13 12 16 16 C 1.50693 * 110.76099 * 203.55908 * 14 13 12 17 17 H 1.08007 * 120.00450 * 118.54454 * 16 14 13 18 18 C 1.37874 * 120.00082 * 298.54931 * 16 14 13 19 19 N 1.31517 * 120.00033 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00307 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47059 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46983 * 119.99937 * 20 18 16 23 23 H 1.48495 * 109.47088 * 239.99465 * 20 18 16 24 24 C 1.54268 * 110.03144 * 203.62103 * 10 9 7 25 25 H 1.08994 * 109.46969 * 65.98198 * 1 2 3 26 26 H 1.09005 * 109.46941 * 305.98412 * 1 2 3 27 27 H 1.08998 * 109.47307 * 185.98596 * 1 2 3 28 28 H 1.08997 * 109.47006 * 60.70684 * 3 2 1 29 29 H 1.09004 * 109.47013 * 180.70241 * 3 2 1 30 30 H 1.08997 * 109.47362 * 300.70215 * 3 2 1 31 31 H 1.00894 * 110.99947 * 335.82585 * 4 2 1 32 32 H 1.09001 * 110.51844 * 280.54281 * 5 4 2 33 33 H 1.09000 * 110.83908 * 157.56260 * 5 4 2 34 34 H 1.09001 * 110.72228 * 204.33137 * 6 5 4 35 35 H 1.09003 * 110.87782 * 81.11753 * 6 5 4 36 36 H 1.00904 * 111.00155 * 319.21929 * 9 7 2 37 37 H 1.09002 * 110.03004 * 238.57239 * 12 10 9 38 38 H 1.09003 * 110.02841 * 359.94886 * 12 10 9 39 39 H 1.09002 * 110.48690 * 142.29255 * 13 12 10 40 40 H 1.09007 * 110.48705 * 264.92872 * 13 12 10 41 41 H 0.96998 * 120.00174 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.48756 * 335.78312 * 24 10 9 43 43 H 1.08998 * 110.48536 * 98.42993 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0510 1.4386 0.0000 4 7 2.0338 -0.7183 -1.1908 5 6 3.2681 -1.4198 -0.7448 6 6 2.9059 -1.9105 0.6795 7 6 2.0546 -0.7480 1.2396 8 1 2.6700 -0.0858 1.8487 9 7 0.9336 -1.2721 2.0311 10 6 1.3763 -1.6633 3.3761 11 1 2.3872 -2.0684 3.3331 12 6 1.3354 -0.4478 4.3188 13 6 0.3462 -0.7997 5.4490 14 6 0.3286 -2.3483 5.4699 15 1 1.1925 -2.7372 6.0088 16 6 -0.9519 -2.8598 6.0778 17 1 -1.6227 -3.4696 5.4907 18 6 -1.2674 -2.5493 7.3836 19 7 -0.4505 -1.8071 8.0988 20 14 -2.8550 -3.1827 8.1370 21 1 -3.5932 -3.9882 7.1314 22 1 -2.5403 -4.0292 9.3158 23 1 -3.6938 -2.0336 8.5627 24 6 0.4105 -2.7114 3.9664 25 1 -0.3633 0.4183 -0.9386 26 1 -0.3633 0.6038 0.8316 27 1 -0.3634 -1.0220 0.1072 28 1 1.7019 1.9514 0.8962 29 1 3.1409 1.4303 -0.0126 30 1 1.6814 1.9589 -0.8836 31 1 1.3490 -1.3753 -1.5332 32 1 4.1097 -0.7279 -0.7109 33 1 3.4917 -2.2639 -1.3972 34 1 3.8052 -2.0535 1.2785 35 1 2.3223 -2.8302 0.6368 36 1 0.1804 -0.6025 2.0789 37 1 2.3264 -0.2636 4.7338 38 1 0.9879 0.4325 3.7780 39 1 0.7017 -0.4092 6.4025 40 1 -0.6463 -0.4099 5.2224 41 1 -0.6722 -1.5889 9.0175 42 1 -0.5715 -2.6304 3.5003 43 1 0.8131 -3.7162 3.8380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925682475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = -10.545287 kcal Electronic energy + Delta-G solvation = -19619.803413 eV Core-core repulsion = 16891.731831 eV Total energy + Delta-G solvation = -2728.071582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82760 -37.34661 -33.67914 -32.44828 -31.76328 -28.71465 -28.04221 -27.39757 -26.06963 -24.45093 -23.42794 -21.20968 -19.36387 -19.12914 -18.70889 -16.46479 -16.08305 -15.67762 -15.37450 -14.55886 -14.25419 -14.16385 -13.73142 -13.09894 -12.95843 -12.63459 -12.36866 -12.18913 -12.03431 -11.81730 -11.50507 -11.36778 -11.22127 -10.99959 -10.98235 -10.77352 -10.62086 -10.52532 -10.41267 -10.02362 -9.76403 -9.51517 -9.10905 -8.74543 -8.66634 -8.34571 -7.96689 -5.97625 -4.00187 3.30990 3.39167 3.43414 4.07731 4.37408 4.48150 4.67941 4.88488 5.02433 5.19227 5.30585 5.34145 5.37189 5.55406 5.60527 5.63177 5.67697 5.72115 5.76190 5.86046 5.87701 5.97363 6.01920 6.15306 6.23148 6.26586 6.34840 6.53339 6.70135 6.75535 6.77820 6.85413 7.07931 7.16948 7.29465 7.36777 7.60208 7.74777 7.77189 7.94787 8.07585 8.50161 9.02911 9.63920 11.11644 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.004558 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.811135 B = 6141.629988 C = 6162.739787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C -0.129 4.129 4 N -0.663 5.663 5 C 0.042 3.958 6 C -0.147 4.147 7 C 0.064 3.936 8 H 0.047 0.953 9 N -0.676 5.676 10 C 0.082 3.918 11 H 0.063 0.937 12 C -0.153 4.153 13 C -0.097 4.097 14 C 0.048 3.952 15 H 0.026 0.974 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.101 4.101 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.338 0.662 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.342 0.658 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.258 0.742 42 H 0.060 0.940 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 3.905 -15.480 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.003 3.997 3 C -0.187 4.187 4 N -0.291 5.291 5 C -0.088 4.088 6 C -0.187 4.187 7 C -0.048 4.048 8 H 0.065 0.935 9 N -0.310 5.310 10 C -0.027 4.027 11 H 0.081 0.919 12 C -0.193 4.193 13 C -0.136 4.136 14 C 0.029 3.971 15 H 0.044 0.956 16 C -0.548 4.548 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.984 3.936 -15.919 17.456 hybrid contribution -0.952 -0.092 1.654 1.911 sum 5.031 3.844 -14.265 15.607 Atomic orbital electron populations 1.22020 0.93936 1.03376 1.01691 1.21751 0.94920 0.94443 0.88585 1.21757 1.00934 0.94572 1.01415 1.62978 1.07276 1.29432 1.29403 1.23089 0.94005 0.97337 0.94335 1.23154 0.99524 0.99215 0.96759 1.22757 0.92890 0.94689 0.94420 0.93536 1.61054 1.09074 1.45689 1.15137 1.22346 0.98562 0.95796 0.86011 0.91877 1.22965 1.00334 0.96729 0.99241 1.22239 0.95885 0.99825 0.95605 1.19582 0.96757 0.91456 0.89317 0.95558 1.21180 1.05151 1.31591 0.96866 0.92624 1.24980 0.96667 0.95137 0.97198 1.69974 1.36349 1.37724 1.08989 0.86600 0.83910 0.78658 0.79219 1.19787 1.21117 1.21145 1.22419 0.97646 0.95558 0.98268 0.92360 0.91997 0.90652 0.92709 0.92802 0.92174 0.84552 0.90705 0.90932 0.91604 0.90222 0.83589 0.93421 0.93955 0.91573 0.93650 0.93248 0.92098 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.16 37.16 0.27 -1.40 16 2 C 0.09 1.07 1.15 -130.53 -0.15 0.92 16 3 C -0.13 -1.39 8.61 37.16 0.32 -1.07 16 4 N -0.66 -7.11 7.05 -96.25 -0.68 -7.79 16 5 C 0.04 0.43 7.54 -1.74 -0.01 0.42 16 6 C -0.15 -1.75 6.23 -24.87 -0.15 -1.91 16 7 C 0.06 0.83 2.79 -66.36 -0.19 0.65 16 8 H 0.05 0.65 7.42 -51.93 -0.39 0.27 16 9 N -0.68 -10.10 4.97 -97.16 -0.48 -10.58 16 10 C 0.08 1.46 3.07 -66.59 -0.20 1.25 16 11 H 0.06 1.11 7.50 -51.93 -0.39 0.72 16 12 C -0.15 -2.88 6.28 -25.61 -0.16 -3.04 16 13 C -0.10 -2.27 5.57 -25.08 -0.14 -2.40 16 14 C 0.05 1.19 2.81 -89.78 -0.25 0.93 16 15 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.51 -14.07 8.55 -34.44 -0.29 -14.36 16 17 H 0.06 1.53 7.79 -52.48 -0.41 1.12 16 18 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 19 N -0.89 -25.75 12.02 55.43 0.67 -25.08 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.10 -2.10 5.96 -25.07 -0.15 -2.25 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.68 7.15 -51.93 -0.37 0.31 16 27 H 0.07 0.89 7.39 -51.93 -0.38 0.51 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.34 3.45 8.40 -39.30 -0.33 3.12 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 36 H 0.34 5.11 5.60 -39.29 -0.22 4.89 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.73 7.59 -51.93 -0.39 0.34 16 39 H 0.07 1.69 7.37 -51.93 -0.38 1.31 16 40 H 0.04 1.09 8.04 -51.93 -0.42 0.68 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -27.74 325.96 -9.70 -37.44 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.88 Total: 5.37 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.21 Total: -20.66 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.50 Total: -43.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.74 -9.70 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925682475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.890 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds