Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.90579 * 2 1 4 4 N 1.47904 * 109.91224 * 238.90092 * 2 1 3 5 5 C 1.48816 * 105.67283 * 215.45121 * 4 2 1 6 6 C 1.54936 * 103.34817 * 38.97832 * 5 4 2 7 7 C 1.53992 * 109.91676 * 121.10677 * 2 1 3 8 8 H 1.08998 * 110.30483 * 239.59152 * 7 2 1 9 9 N 1.46897 * 110.31048 * 1.65802 * 7 2 1 10 10 C 1.46900 * 111.00009 * 195.26721 * 9 7 2 11 11 H 1.08993 * 110.01787 * 325.06506 * 10 9 7 12 12 C 1.53876 * 110.03344 * 86.45562 * 10 9 7 13 13 C 1.54261 * 106.59972 * 119.28353 * 12 10 9 14 14 C 1.54888 * 104.19836 * 23.61044 * 13 12 10 15 15 H 1.08999 * 110.75540 * 80.37085 * 14 13 12 16 16 C 1.50693 * 110.76099 * 203.55908 * 14 13 12 17 17 H 1.08007 * 120.00450 * 118.54454 * 16 14 13 18 18 C 1.37874 * 120.00082 * 298.54931 * 16 14 13 19 19 N 1.31517 * 120.00033 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00307 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47059 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46983 * 119.99937 * 20 18 16 23 23 H 1.48495 * 109.47088 * 239.99465 * 20 18 16 24 24 C 1.54268 * 110.03144 * 203.62103 * 10 9 7 25 25 H 1.08994 * 109.46969 * 65.98198 * 1 2 3 26 26 H 1.09005 * 109.46941 * 305.98412 * 1 2 3 27 27 H 1.08998 * 109.47307 * 185.98596 * 1 2 3 28 28 H 1.08997 * 109.47006 * 60.70684 * 3 2 1 29 29 H 1.09004 * 109.47013 * 180.70241 * 3 2 1 30 30 H 1.08997 * 109.47362 * 300.70215 * 3 2 1 31 31 H 1.00894 * 110.99947 * 335.82585 * 4 2 1 32 32 H 1.09001 * 110.51844 * 280.54281 * 5 4 2 33 33 H 1.09000 * 110.83908 * 157.56260 * 5 4 2 34 34 H 1.09001 * 110.72228 * 204.33137 * 6 5 4 35 35 H 1.09003 * 110.87782 * 81.11753 * 6 5 4 36 36 H 1.00904 * 111.00155 * 319.21929 * 9 7 2 37 37 H 1.09002 * 110.03004 * 238.57239 * 12 10 9 38 38 H 1.09003 * 110.02841 * 359.94886 * 12 10 9 39 39 H 1.09002 * 110.48690 * 142.29255 * 13 12 10 40 40 H 1.09007 * 110.48705 * 264.92872 * 13 12 10 41 41 H 0.96998 * 120.00174 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.48756 * 335.78312 * 24 10 9 43 43 H 1.08998 * 110.48536 * 98.42993 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0510 1.4386 0.0000 4 7 2.0338 -0.7183 -1.1908 5 6 3.2681 -1.4198 -0.7448 6 6 2.9059 -1.9105 0.6795 7 6 2.0546 -0.7480 1.2396 8 1 2.6700 -0.0858 1.8487 9 7 0.9336 -1.2721 2.0311 10 6 1.3763 -1.6633 3.3761 11 1 2.3872 -2.0684 3.3331 12 6 1.3354 -0.4478 4.3188 13 6 0.3462 -0.7997 5.4490 14 6 0.3286 -2.3483 5.4699 15 1 1.1925 -2.7372 6.0088 16 6 -0.9519 -2.8598 6.0778 17 1 -1.6227 -3.4696 5.4907 18 6 -1.2674 -2.5493 7.3836 19 7 -0.4505 -1.8071 8.0988 20 14 -2.8550 -3.1827 8.1370 21 1 -3.5932 -3.9882 7.1314 22 1 -2.5403 -4.0292 9.3158 23 1 -3.6938 -2.0336 8.5627 24 6 0.4105 -2.7114 3.9664 25 1 -0.3633 0.4183 -0.9386 26 1 -0.3633 0.6038 0.8316 27 1 -0.3634 -1.0220 0.1072 28 1 1.7019 1.9514 0.8962 29 1 3.1409 1.4303 -0.0126 30 1 1.6814 1.9589 -0.8836 31 1 1.3490 -1.3753 -1.5332 32 1 4.1097 -0.7279 -0.7109 33 1 3.4917 -2.2639 -1.3972 34 1 3.8052 -2.0535 1.2785 35 1 2.3223 -2.8302 0.6368 36 1 0.1804 -0.6025 2.0789 37 1 2.3264 -0.2636 4.7338 38 1 0.9879 0.4325 3.7780 39 1 0.7017 -0.4092 6.4025 40 1 -0.6463 -0.4099 5.2224 41 1 -0.6722 -1.5889 9.0175 42 1 -0.5715 -2.6304 3.5003 43 1 0.8131 -3.7162 3.8380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925682475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = -27.752540 kcal Electronic energy + Delta-G solvation = -19620.549575 eV Core-core repulsion = 16891.731831 eV Total energy + Delta-G solvation = -2728.817744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85743 -38.90118 -35.31435 -33.68525 -33.18578 -30.01735 -29.64977 -28.54941 -27.41232 -25.79459 -24.97421 -22.21804 -21.15825 -20.59736 -19.80533 -18.39525 -17.18285 -16.89462 -16.55830 -16.43115 -15.69273 -15.30652 -14.95167 -14.58714 -14.13772 -13.92652 -13.67507 -13.63817 -13.14563 -12.98665 -12.94037 -12.78738 -12.64297 -12.40394 -12.29989 -12.26892 -11.92337 -11.80423 -11.71562 -11.51578 -11.36491 -11.33664 -10.94742 -10.80293 -10.47020 -9.54811 -9.24515 -8.11425 -6.21498 1.39267 1.41248 1.52825 2.43338 3.17409 3.19220 3.26624 3.73322 3.92438 4.02202 4.07868 4.11870 4.25607 4.33845 4.40406 4.46827 4.70137 4.73476 4.79134 4.80623 4.85163 4.89389 5.01001 5.03655 5.05100 5.07568 5.11757 5.17529 5.22210 5.25056 5.37060 5.39428 5.43181 5.48916 5.65624 5.90113 5.92209 6.00459 6.26271 6.39263 6.45376 6.58041 6.89391 7.46249 8.97032 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.004558 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.811135 B = 6141.629988 C = 6162.739787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.098 3.902 3 C -0.127 4.127 4 N -0.663 5.663 5 C 0.048 3.952 6 C -0.146 4.146 7 C 0.062 3.938 8 H 0.040 0.960 9 N -0.671 5.671 10 C 0.097 3.903 11 H 0.069 0.931 12 C -0.141 4.141 13 C -0.089 4.089 14 C 0.037 3.963 15 H -0.005 1.005 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.090 4.090 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.344 0.656 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.055 0.945 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 4.148 -17.157 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 C -0.185 4.185 4 N -0.291 5.291 5 C -0.082 4.082 6 C -0.185 4.185 7 C -0.050 4.050 8 H 0.058 0.942 9 N -0.305 5.305 10 C -0.013 4.013 11 H 0.087 0.913 12 C -0.180 4.180 13 C -0.127 4.127 14 C 0.018 3.982 15 H 0.013 0.987 16 C -0.568 4.568 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.128 4.128 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.916 4.177 -17.619 19.049 hybrid contribution -0.913 -0.182 2.174 2.365 sum 5.003 3.995 -15.445 16.719 Atomic orbital electron populations 1.21973 0.93654 1.02811 1.02221 1.21726 0.95105 0.94631 0.87948 1.21737 1.00911 0.94114 1.01703 1.62993 1.07565 1.29678 1.28864 1.23100 0.93815 0.97886 0.93365 1.23134 0.99142 0.98297 0.97972 1.22856 0.92181 0.95220 0.94695 0.94184 1.60988 1.09850 1.46258 1.13369 1.22053 0.97867 0.94260 0.87093 0.91266 1.22852 0.99222 0.98041 0.97920 1.22009 0.96248 0.98517 0.95945 1.19575 0.94489 0.92504 0.91585 0.98657 1.21537 1.06123 1.31686 0.97425 0.93011 1.25756 0.99851 0.95341 0.97704 1.70101 1.38022 1.38679 1.09231 0.85587 0.80035 0.78185 0.78359 1.19080 1.20690 1.20641 1.22238 0.98320 0.96741 0.95541 0.91268 0.92183 0.91577 0.92740 0.92825 0.91585 0.84138 0.90280 0.89349 0.91557 0.91329 0.83399 0.92852 0.91947 0.94587 0.95044 0.93197 0.92606 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 7.16 71.98 0.52 -2.43 16 2 C 0.10 1.99 1.15 3.67 0.00 1.99 16 3 C -0.13 -2.43 8.61 71.98 0.62 -1.81 16 4 N -0.66 -12.51 7.05 -458.42 -3.23 -15.74 16 5 C 0.05 0.85 7.54 86.59 0.65 1.51 16 6 C -0.15 -3.19 6.23 31.80 0.20 -2.99 16 7 C 0.06 1.48 2.79 45.79 0.13 1.61 16 8 H 0.04 1.04 7.42 -2.39 -0.02 1.02 16 9 N -0.67 -18.95 4.97 -461.31 -2.29 -21.24 16 10 C 0.10 3.34 3.07 45.64 0.14 3.48 16 11 H 0.07 2.33 7.50 -2.39 -0.02 2.31 16 12 C -0.14 -5.18 6.28 31.32 0.20 -4.99 16 13 C -0.09 -4.22 5.57 31.67 0.18 -4.04 16 14 C 0.04 1.90 2.81 -10.25 -0.03 1.87 16 15 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 16 C -0.53 -29.77 8.55 25.60 0.22 -29.56 16 17 H 0.05 2.87 7.79 -2.91 -0.02 2.85 16 18 C 0.01 0.67 5.33 84.65 0.45 1.12 16 19 N -0.92 -54.34 12.02 21.45 0.26 -54.09 16 20 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 C -0.09 -3.75 5.96 31.67 0.19 -3.56 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.21 7.15 -2.38 -0.02 1.19 16 27 H 0.07 1.44 7.39 -2.39 -0.02 1.42 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.34 6.11 8.40 -89.70 -0.75 5.36 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 36 H 0.34 9.66 5.60 -89.69 -0.50 9.16 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.04 7.59 -2.39 -0.02 2.03 16 39 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 40 H 0.03 1.53 8.04 -2.38 -0.02 1.51 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.06 2.36 7.96 -2.39 -0.02 2.35 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -59.57 325.96 -0.07 -59.64 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.29 Total: 22.95 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.46 Total: -37.80 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -5.27 Total: -91.07 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.57 -0.07 -59.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925682475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.890 kcal (2) G-P(sol) polarization free energy of solvation -59.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds