Wall clock time and date at job start Mon Mar 30 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47183 * 59.99833 * 8 6 4 10 10 H 1.48504 * 109.47670 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47006 * 300.00098 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 H 1.08999 * 110.32900 * 34.29687 * 14 13 12 16 16 C 1.54775 * 110.36385 * 272.06231 * 14 13 12 17 17 C 1.55179 * 102.86526 * 219.31910 * 16 14 13 18 18 N 1.48704 * 103.40605 * 36.91951 * 17 16 14 19 19 C 1.47211 * 105.63075 * 321.52243 * 18 17 16 20 20 C 1.53098 * 115.18383 * 154.84087 * 19 18 17 21 21 C 1.53902 * 86.88499 * 91.79805 * 20 19 18 22 22 C 1.53111 * 115.15506 * 254.82292 * 19 18 17 23 23 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 24 24 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 25 25 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 28 28 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 29 29 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 31 31 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 32 32 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 33 33 H 1.08995 * 110.72081 * 337.62161 * 16 14 13 34 34 H 1.09001 * 110.71957 * 100.88532 * 16 14 13 35 35 H 1.09002 * 110.56422 * 278.46335 * 17 16 14 36 36 H 1.09001 * 110.80752 * 155.50210 * 17 16 14 37 37 H 1.00901 * 110.99927 * 201.12254 * 18 17 16 38 38 H 1.09001 * 113.64817 * 206.30083 * 20 19 18 39 39 H 1.09004 * 113.64536 * 337.30436 * 20 19 18 40 40 H 1.09000 * 113.59515 * 270.34890 * 21 20 19 41 41 H 1.09000 * 113.66845 * 139.52246 * 21 20 19 42 42 H 1.09007 * 113.64282 * 22.66696 * 22 19 18 43 43 H 1.08997 * 113.65294 * 153.67990 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8276 -0.4191 -5.2206 11 1 3.8073 -1.1188 -4.0079 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 1 3.0191 -1.1069 3.5160 16 6 1.0362 -1.8118 4.0895 17 6 1.0053 -1.6831 5.6356 18 7 1.0877 -0.2155 5.8611 19 6 2.0272 0.2895 4.8465 20 6 1.8434 1.7603 4.4632 21 6 2.8681 2.0881 5.5637 22 6 3.4156 0.6624 5.3735 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7079 1.1609 -3.4844 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.5438 0.0412 2.4402 33 1 0.0473 -1.6317 3.6680 34 1 1.4119 -2.7901 3.7896 35 1 1.8631 -2.1887 6.0791 36 1 0.0747 -2.0823 6.0389 37 1 1.4169 -0.0107 6.7926 38 1 2.1911 1.9967 3.4575 39 1 0.8439 2.1439 4.6683 40 1 2.4186 2.2560 6.5424 41 1 3.5761 2.8683 5.2840 42 1 3.6762 0.1659 6.3083 43 1 4.2019 0.5927 4.6219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925689869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:49 Heat of formation + Delta-G solvation = 20.321848 kcal Electronic energy + Delta-G solvation = -19893.652694 eV Core-core repulsion = 17166.919612 eV Total energy + Delta-G solvation = -2726.733083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19509 -36.69624 -35.15591 -33.28820 -30.90462 -28.41383 -26.55124 -25.56744 -25.50569 -25.13305 -23.34639 -22.09847 -20.60336 -18.61207 -18.27608 -16.44064 -15.85068 -15.38524 -14.98034 -14.64032 -14.21420 -13.80409 -13.53080 -12.98306 -12.77193 -12.43733 -12.14745 -12.03040 -11.98397 -11.82781 -11.44727 -11.11488 -11.01487 -10.73804 -10.61726 -10.60370 -10.49658 -10.20890 -10.12747 -10.02578 -9.92254 -9.35361 -9.00811 -8.60006 -8.47804 -8.26198 -7.59693 -5.88763 -3.99172 3.33744 3.38685 3.41157 4.17521 4.44046 4.60721 4.71412 4.81343 4.96803 5.08830 5.17523 5.34840 5.36549 5.44435 5.60556 5.72276 5.75722 5.88872 5.97928 6.03325 6.08344 6.19454 6.34196 6.39648 6.43054 6.48993 6.68428 6.76026 6.93473 7.01576 7.12214 7.20687 7.37555 7.41886 7.51597 7.78835 7.79224 7.87480 8.04428 8.24945 8.38127 8.58758 9.02144 9.65655 11.11605 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.005296 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.762658 B = 5286.105614 C = 5576.619919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 C -0.118 4.118 4 C -0.507 4.507 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.671 5.671 14 C 0.093 3.907 15 H 0.077 0.923 16 C -0.154 4.154 17 C 0.041 3.959 18 N -0.647 5.647 19 C 0.082 3.918 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.155 4.155 23 H 0.011 0.989 24 H 0.082 0.918 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.342 0.658 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.332 0.668 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -1.351 15.375 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.176 4.176 4 C -0.546 4.546 5 H 0.068 0.932 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.302 5.302 14 C -0.020 4.020 15 H 0.095 0.905 16 C -0.194 4.194 17 C -0.088 4.088 18 N -0.275 5.275 19 C -0.010 4.010 20 C -0.140 4.140 21 C -0.184 4.184 22 C -0.194 4.194 23 H 0.030 0.970 24 H 0.101 0.899 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.378 -0.579 14.865 14.940 hybrid contribution 0.725 -1.800 -0.442 1.990 sum 2.102 -2.379 14.423 14.768 Atomic orbital electron populations 1.21829 0.98534 0.98298 1.00295 1.18073 0.92067 0.93020 0.89927 1.21634 0.97673 0.98220 1.00084 1.21074 1.31146 1.11772 0.90559 0.93179 1.24877 0.95076 0.94948 0.98635 1.69830 1.36774 1.22753 1.22972 0.86736 0.79161 0.79751 0.82734 1.20519 1.21368 1.20450 1.22163 0.98618 0.94484 0.89975 1.60586 1.16646 1.52497 1.00425 1.22186 0.97853 0.91047 0.90868 0.90481 1.23345 1.01006 0.99955 0.95101 1.22988 1.00336 0.88960 0.96513 1.62857 1.47956 1.10687 1.06022 1.22366 0.90382 0.96306 0.91933 1.22744 0.98784 0.93053 0.99452 1.22901 0.99502 0.96361 0.99586 1.23472 0.97794 0.97572 1.00610 0.96988 0.89888 0.96327 0.96411 0.90823 0.96038 0.93163 0.92821 0.97013 0.83807 0.90701 0.91474 0.94448 0.90478 0.85152 0.87473 0.91665 0.91042 0.91809 0.92551 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 3 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 4 C -0.51 -13.63 8.01 -34.44 -0.28 -13.90 16 5 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.53 9.35 55.43 0.52 -24.01 16 8 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.08 1.56 4.43 -3.82 -0.02 1.54 16 13 N -0.67 -11.68 3.88 -105.53 -0.41 -12.08 16 14 C 0.09 1.37 3.02 -66.59 -0.20 1.17 16 15 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 16 C -0.15 -2.07 6.73 -24.64 -0.17 -2.24 16 17 C 0.04 0.47 7.56 -1.67 -0.01 0.46 16 18 N -0.65 -7.83 7.34 -96.87 -0.71 -8.54 16 19 C 0.08 1.08 1.36 -131.13 -0.18 0.90 16 20 C -0.10 -1.42 6.94 -26.21 -0.18 -1.60 16 21 C -0.15 -1.69 8.02 -25.79 -0.21 -1.90 16 22 C -0.16 -1.83 7.17 -26.20 -0.19 -2.02 16 23 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 28 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.34 6.17 6.18 -39.29 -0.24 5.92 16 33 H 0.07 1.09 7.59 -51.93 -0.39 0.69 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.33 3.47 8.47 -39.29 -0.33 3.14 16 38 H 0.11 1.71 7.25 -51.93 -0.38 1.34 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.59 8.07 -51.92 -0.42 0.17 16 43 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -26.53 323.37 -9.47 -36.00 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.71 Total: 7.32 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.01 Total: -19.70 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.60 Total: -44.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.53 -9.47 -36.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925689869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.323 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds