Wall clock time and date at job start Mon Mar 30 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47219 * 2 1 4 4 C 1.50691 * 109.47779 * 239.99221 * 2 1 3 5 5 H 1.07994 * 120.00396 * 236.87515 * 4 2 1 6 6 C 1.37882 * 119.99730 * 56.87169 * 4 2 1 7 7 N 1.31518 * 119.99991 * 5.79913 * 6 4 2 8 8 Si 1.86801 * 120.00071 * 185.79771 * 6 4 2 9 9 H 1.48505 * 109.47022 * 85.02497 * 8 6 4 10 10 H 1.48495 * 109.47400 * 205.02350 * 8 6 4 11 11 H 1.48494 * 109.47139 * 325.02737 * 8 6 4 12 12 C 1.53003 * 109.46814 * 119.99175 * 2 1 3 13 13 N 1.46897 * 109.47335 * 300.00126 * 12 2 1 14 14 C 1.46907 * 111.00111 * 179.97438 * 13 12 2 15 15 H 1.08998 * 110.32371 * 327.24070 * 14 13 12 16 16 C 1.54773 * 110.36250 * 89.58980 * 14 13 12 17 17 C 1.54999 * 102.94971 * 140.74873 * 16 14 13 18 18 N 1.48696 * 103.34459 * 322.96110 * 17 16 14 19 19 C 1.47220 * 105.63274 * 38.52884 * 18 17 16 20 20 C 1.53121 * 115.14661 * 105.18511 * 19 18 17 21 21 C 1.53903 * 86.87847 * 91.82205 * 20 19 18 22 22 C 1.53092 * 115.18178 * 205.16263 * 19 18 17 23 23 H 1.08995 * 109.47365 * 293.84777 * 1 2 3 24 24 H 1.08997 * 109.46639 * 53.84614 * 1 2 3 25 25 H 1.08999 * 109.46716 * 173.84433 * 1 2 3 26 26 H 1.08990 * 109.47259 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.46570 * 299.99636 * 3 2 1 28 28 H 1.08998 * 109.47320 * 59.99048 * 3 2 1 29 29 H 0.96998 * 119.99737 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47028 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47087 * 60.00378 * 12 2 1 32 32 H 1.00896 * 111.00485 * 303.95380 * 13 12 2 33 33 H 1.09002 * 110.72325 * 259.11824 * 16 14 13 34 34 H 1.09002 * 110.71965 * 22.38648 * 16 14 13 35 35 H 1.09000 * 110.64459 * 204.49139 * 17 16 14 36 36 H 1.08997 * 110.77783 * 81.49036 * 17 16 14 37 37 H 1.00900 * 110.99566 * 278.13447 * 18 17 16 38 38 H 1.09001 * 113.64378 * 206.31588 * 20 19 18 39 39 H 1.08998 * 113.64732 * 337.32807 * 20 19 18 40 40 H 1.09000 * 113.59795 * 270.35054 * 21 20 19 41 41 H 1.09001 * 113.59460 * 139.50575 * 21 20 19 42 42 H 1.08999 * 113.64649 * 22.70672 * 22 19 18 43 43 H 1.08999 * 113.64277 * 153.71676 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2302 5 1 2.6944 -1.5581 -1.1318 6 6 1.6471 -0.2784 -2.4816 7 7 0.9350 0.8202 -2.6075 8 14 2.1363 -1.2532 -3.9981 9 1 1.1509 -2.3404 -4.2269 10 1 2.1625 -0.3526 -5.1784 11 1 3.4844 -1.8418 -3.7945 12 6 2.0399 -0.7211 1.2494 13 7 1.5502 -0.0285 2.4487 14 6 2.0207 -0.6948 3.6705 15 1 2.1029 -1.7695 3.5080 16 6 3.3832 -0.1089 4.1130 17 6 3.2532 -0.0547 5.6565 18 7 1.8307 0.3234 5.8680 19 6 1.0699 -0.4025 4.8378 20 6 0.2757 -1.6095 5.3450 21 6 -0.9099 -0.6457 5.5291 22 6 -0.2651 0.2348 4.4438 23 1 -0.3634 0.4155 0.9399 24 1 -0.3632 0.6063 -0.8298 25 1 -0.3633 -1.0217 -0.1102 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.6642 1.1243 -3.4879 30 1 3.1299 -0.7207 1.2497 31 1 1.6766 -1.7488 1.2495 32 1 1.8196 0.9438 2.4402 33 1 4.2003 -0.7671 3.8176 34 1 3.5246 0.8910 3.7025 35 1 3.9181 0.7027 6.0718 36 1 3.4612 -1.0299 6.0966 37 1 1.7040 1.3202 5.7759 38 1 0.1055 -2.3716 4.5845 39 1 0.6546 -2.0202 6.2808 40 1 -0.9408 -0.1746 6.5116 41 1 -1.8685 -1.0716 5.2328 42 1 -0.3199 1.3023 4.6573 43 1 -0.5862 -0.0131 3.4321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925689871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:52 Heat of formation + Delta-G solvation = 19.781169 kcal Electronic energy + Delta-G solvation = -19909.236222 eV Core-core repulsion = 17182.479694 eV Total energy + Delta-G solvation = -2726.756528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17796 -36.69892 -35.26354 -33.26697 -30.87698 -28.33731 -26.53694 -25.60385 -25.52944 -25.15460 -23.35795 -22.14109 -20.60901 -18.58202 -18.38514 -16.14527 -15.88487 -15.62512 -14.76015 -14.67628 -14.22391 -14.00637 -13.59629 -13.03127 -12.83540 -12.59901 -12.15764 -12.07978 -11.92577 -11.48685 -11.31807 -11.22302 -11.00889 -10.75343 -10.67502 -10.60537 -10.47435 -10.18869 -10.08987 -10.05562 -9.89508 -9.39887 -9.14048 -8.64739 -8.55032 -8.28246 -7.63546 -5.92868 -4.01785 3.31132 3.37692 3.40076 4.16592 4.41121 4.55146 4.72114 5.02550 5.08568 5.12661 5.23524 5.32104 5.33202 5.41564 5.61123 5.63310 5.85699 5.94058 6.02215 6.10240 6.13075 6.23371 6.25079 6.34099 6.41874 6.58268 6.60631 6.70764 6.88331 7.00342 7.06494 7.15758 7.35754 7.39485 7.46951 7.73872 7.75109 7.82926 7.96479 8.19761 8.31778 8.54825 8.99395 9.62924 11.08360 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034050 B = 0.005312 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.111861 B = 5269.902505 C = 5535.687597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.077 3.923 13 N -0.672 5.672 14 C 0.073 3.927 15 H 0.079 0.921 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.654 5.654 19 C 0.081 3.919 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.117 4.117 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.083 0.917 28 H 0.009 0.991 29 H 0.258 0.742 30 H 0.011 0.989 31 H 0.055 0.945 32 H 0.336 0.664 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.337 0.663 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -0.637 14.468 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.069 0.931 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.052 4.052 13 N -0.302 5.302 14 C -0.040 4.040 15 H 0.097 0.903 16 C -0.228 4.228 17 C -0.083 4.083 18 N -0.282 5.282 19 C -0.011 4.011 20 C -0.155 4.155 21 C -0.176 4.176 22 C -0.155 4.155 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.086 -1.281 14.881 14.936 hybrid contribution 1.683 0.159 -1.769 2.446 sum 1.597 -1.122 13.113 13.257 Atomic orbital electron populations 1.21623 0.97373 0.99228 0.99329 1.18082 0.93152 0.91866 0.90019 1.21846 0.97620 0.99238 1.00143 1.21087 1.28857 1.14192 0.90582 0.93104 1.24877 0.95164 0.94774 0.98629 1.69852 1.38038 1.21387 1.22977 0.86695 0.78841 0.80081 0.82830 1.20689 1.21388 1.20211 1.22157 0.95448 0.97692 0.89881 1.60635 1.62752 1.06081 1.00732 1.22657 0.90833 0.99033 0.91493 0.90253 1.23871 0.99810 1.01529 0.97605 1.23021 0.89763 1.01460 0.94098 1.62463 1.06313 1.11479 1.47943 1.22366 0.93104 0.96445 0.89220 1.22782 0.96163 0.95737 1.00813 1.22818 0.97240 0.98273 0.99277 1.22943 0.94051 0.98109 1.00406 0.95868 0.91207 0.96158 0.96365 0.89841 0.97245 0.93192 0.97072 0.92670 0.84380 0.91268 0.91483 0.91242 0.90512 0.84636 0.90116 0.91649 0.90667 0.92149 0.92452 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 8.05 37.16 0.30 -2.52 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.13 -3.05 7.95 37.16 0.30 -2.75 16 4 C -0.51 -13.63 8.01 -34.44 -0.28 -13.90 16 5 H 0.05 1.37 7.75 -52.49 -0.41 0.96 16 6 C 0.07 1.80 5.13 -17.82 -0.09 1.71 16 7 N -0.88 -24.41 9.46 55.43 0.52 -23.89 16 8 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.08 1.56 4.44 -3.82 -0.02 1.55 16 13 N -0.67 -11.36 3.78 -105.53 -0.40 -11.76 16 14 C 0.07 1.05 3.04 -66.59 -0.20 0.85 16 15 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 16 C -0.19 -2.42 6.74 -24.74 -0.17 -2.58 16 17 C 0.05 0.52 7.56 -1.77 -0.01 0.51 16 18 N -0.65 -7.78 7.27 -96.98 -0.70 -8.48 16 19 C 0.08 1.05 1.29 -131.13 -0.17 0.88 16 20 C -0.12 -1.47 7.44 -26.20 -0.20 -1.66 16 21 C -0.14 -1.67 8.07 -25.79 -0.21 -1.88 16 22 C -0.12 -1.56 6.83 -26.21 -0.18 -1.74 16 23 H 0.02 0.50 7.42 -51.93 -0.39 0.11 16 24 H 0.07 1.83 6.25 -51.93 -0.32 1.51 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 2.18 6.11 -51.93 -0.32 1.86 16 28 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.34 5.78 6.14 -39.29 -0.24 5.54 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.34 3.79 8.64 -39.29 -0.34 3.45 16 38 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 43 H 0.11 1.70 7.25 -51.93 -0.38 1.32 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -26.27 323.51 -9.45 -35.72 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.71 Total: 7.42 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.01 Total: -19.98 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.58 Total: -44.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.27 -9.45 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925689871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.502 kcal (2) G-P(sol) polarization free energy of solvation -26.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds