Wall clock time and date at job start Mon Mar 30 2020 04:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 C 1.50694 * 109.47293 * 240.00049 * 2 1 3 5 5 H 1.08007 * 119.99716 * 239.99780 * 4 2 1 6 6 C 1.37876 * 120.00261 * 59.99971 * 4 2 1 7 7 N 1.31516 * 119.99644 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48512 * 109.47087 * 60.00006 * 8 6 4 10 10 H 1.48492 * 109.47470 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47331 * 300.00417 * 8 6 4 12 12 C 1.53001 * 109.46686 * 119.99634 * 2 1 3 13 13 N 1.46896 * 109.47356 * 300.00064 * 12 2 1 14 14 C 1.46905 * 111.00064 * 179.97438 * 13 12 2 15 15 H 1.09005 * 110.42688 * 324.12953 * 14 13 12 16 16 C 1.54060 * 110.37580 * 86.45397 * 14 13 12 17 17 N 1.48236 * 106.69689 * 119.83664 * 16 14 13 18 18 C 1.48814 * 105.17670 * 332.51572 * 17 16 14 19 19 C 1.54985 * 110.38277 * 201.79523 * 14 13 12 20 20 H 1.09005 * 113.19980 * 28.54125 * 19 14 13 21 21 C 1.54014 * 107.05294 * 153.75653 * 19 14 13 22 22 C 1.53156 * 108.50186 * 45.88798 * 21 19 14 23 23 C 1.47672 * 108.91697 * 88.16861 * 17 16 14 24 24 H 1.08993 * 109.47720 * 300.00108 * 1 2 3 25 25 H 1.09001 * 109.47140 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47370 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47301 * 300.00086 * 3 2 1 29 29 H 1.09005 * 109.46681 * 59.99743 * 3 2 1 30 30 H 0.97004 * 119.99500 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.46871 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46908 * 60.00570 * 12 2 1 33 33 H 1.00892 * 111.00523 * 303.95513 * 13 12 2 34 34 H 1.09001 * 110.01300 * 0.52736 * 16 14 13 35 35 H 1.08996 * 110.05593 * 239.16499 * 16 14 13 36 36 H 1.09000 * 110.93109 * 160.89587 * 18 17 16 37 37 H 1.08999 * 110.93264 * 284.56785 * 18 17 16 38 38 H 1.08993 * 109.63326 * 286.18262 * 21 19 14 39 39 H 1.09005 * 109.62984 * 165.58541 * 21 19 14 40 40 H 1.09000 * 109.36527 * 174.18230 * 22 21 19 41 41 H 1.08999 * 109.36567 * 293.80139 * 22 21 19 42 42 H 1.09005 * 109.50425 * 192.97192 * 23 17 16 43 43 H 1.09004 * 109.53451 * 72.88102 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0399 -0.7212 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0206 -0.6951 3.6704 15 1 2.0510 -1.7753 3.5270 16 6 3.4126 -0.1674 4.0673 17 7 3.2738 0.4256 5.4188 18 6 1.8548 0.8653 5.5075 19 6 1.1054 -0.3352 4.8683 20 1 0.0804 -0.1107 4.5732 21 6 1.2020 -1.4964 5.8754 22 6 2.6776 -1.8683 6.0484 23 6 3.4906 -0.6295 6.4291 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 0.7090 1.1614 -3.4844 31 1 3.1299 -0.7216 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 1.8196 0.9436 2.4402 34 1 3.7394 0.5931 3.3581 35 1 4.1302 -0.9874 4.0917 36 1 1.5543 1.0038 6.5460 37 1 1.6929 1.7766 4.9318 38 1 0.6496 -2.3564 5.4968 39 1 0.7880 -1.1848 6.8344 40 1 2.7717 -2.6179 6.8342 41 1 3.0592 -2.2778 5.1131 42 1 3.1690 -0.2692 7.4063 43 1 4.5493 -0.8863 6.4663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926567915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:57 Heat of formation + Delta-G solvation = 3.805615 kcal Electronic energy + Delta-G solvation = -19914.071056 eV Core-core repulsion = 17186.621776 eV Total energy + Delta-G solvation = -2727.449280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84433 -36.68226 -33.80978 -32.19051 -31.37667 -30.14709 -27.70620 -25.54578 -25.22147 -24.53080 -22.93899 -22.82840 -20.43072 -19.22711 -18.41509 -16.26847 -16.07666 -15.73409 -14.97831 -14.39685 -14.24324 -13.92297 -13.23118 -13.15075 -12.69005 -12.62227 -12.43533 -12.26454 -11.96639 -11.68805 -11.58329 -11.18520 -11.07291 -10.99171 -10.75991 -10.62018 -10.58906 -10.44127 -10.34142 -10.16052 -10.03651 -9.37651 -9.02551 -8.64981 -8.53676 -8.26819 -7.59085 -5.89565 -3.99987 3.33519 3.38402 3.40921 4.04063 4.43331 4.53302 4.67800 4.90471 4.96035 5.02807 5.17321 5.20995 5.35783 5.37982 5.46440 5.52157 5.61886 5.75505 5.80930 5.89830 5.97829 6.03939 6.11910 6.25294 6.29026 6.35372 6.45167 6.73062 6.79363 6.91436 6.94601 7.09725 7.18944 7.39715 7.49489 7.76437 7.77691 7.85304 8.00498 8.23217 8.36354 8.57587 9.01185 9.64864 11.10865 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041498 B = 0.004878 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.563995 B = 5738.359199 C = 5844.813097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.677 5.677 14 C 0.065 3.935 15 H 0.079 0.921 16 C 0.000 4.000 17 N -0.497 5.497 18 C 0.030 3.970 19 C -0.115 4.115 20 H 0.101 0.899 21 C -0.114 4.114 22 C -0.158 4.158 23 C 0.035 3.965 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.012 0.988 32 H 0.053 0.947 33 H 0.339 0.661 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -2.078 16.172 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.308 5.308 14 C -0.048 4.048 15 H 0.097 0.903 16 C -0.130 4.130 17 N -0.218 5.218 18 C -0.098 4.098 19 C -0.135 4.135 20 H 0.119 0.881 21 C -0.152 4.152 22 C -0.197 4.197 23 C -0.094 4.094 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.639 -1.807 16.108 16.291 hybrid contribution 0.806 -1.096 -1.027 1.705 sum 2.446 -2.903 15.081 15.551 Atomic orbital electron populations 1.21633 0.97449 0.98496 1.00043 1.18083 0.93149 0.91960 0.89959 1.21830 0.97693 0.99164 1.00257 1.21068 1.31129 1.11844 0.90532 0.93146 1.24879 0.95035 0.94969 0.98653 1.69827 1.36761 1.22761 1.22984 0.86727 0.79099 0.79826 0.82688 1.20443 1.21356 1.20486 1.22155 0.95510 0.97617 0.89914 1.60628 1.63082 1.06286 1.00781 1.22990 0.91574 0.98953 0.91234 0.90301 1.23945 0.98563 0.99104 0.91376 1.66401 1.22418 1.30096 1.02933 1.23553 0.87572 0.98014 1.00643 1.23067 1.00707 0.95418 0.94357 0.88055 1.21794 0.95925 0.98551 0.98921 1.22269 0.96346 0.98850 1.02231 1.22546 0.99793 0.90866 0.96182 0.96130 0.90791 0.96400 0.96239 0.89855 0.97081 0.93154 0.96936 0.92802 0.84117 0.90153 0.91406 0.90727 0.89911 0.91757 0.92003 0.91875 0.91292 0.91015 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.09 37.16 0.30 -2.59 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 4 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 5 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.56 9.35 55.43 0.52 -24.04 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.08 1.58 4.43 -3.83 -0.02 1.57 16 13 N -0.68 -11.87 5.50 -105.03 -0.58 -12.44 16 14 C 0.06 0.94 2.25 -66.11 -0.15 0.79 16 15 H 0.08 1.20 6.66 -51.93 -0.35 0.86 16 16 C 0.00 0.01 5.80 -2.53 -0.01 -0.01 16 17 N -0.50 -6.29 6.07 -228.99 -1.39 -7.68 16 18 C 0.03 0.36 6.41 -1.55 -0.01 0.35 16 19 C -0.12 -1.44 4.02 -87.83 -0.35 -1.79 16 20 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 21 C -0.11 -1.21 5.51 -26.12 -0.14 -1.36 16 22 C -0.16 -1.62 5.52 -26.66 -0.15 -1.77 16 23 C 0.04 0.37 5.84 -3.41 -0.02 0.35 16 24 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 25 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 32 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.34 6.02 6.26 -39.30 -0.25 5.77 16 34 H 0.08 1.23 7.61 -51.93 -0.40 0.84 16 35 H 0.07 0.90 6.94 -51.93 -0.36 0.54 16 36 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.78 5.37 -51.93 -0.28 0.50 16 42 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -26.85 313.32 -10.02 -36.87 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.56 Total: 4.36 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.72 Total: -17.97 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.45 Total: -44.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.85 -10.02 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926567915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.681 kcal (2) G-P(sol) polarization free energy of solvation -26.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds