Wall clock time and date at job start Mon Mar 30 2020 04:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46856 * 2 1 4 4 C 1.53002 * 109.46658 * 240.00723 * 2 1 3 5 5 C 1.53001 * 109.46990 * 299.99304 * 4 2 1 6 6 C 1.53002 * 109.47446 * 300.00752 * 5 4 2 7 7 C 1.52997 * 109.47049 * 59.99453 * 6 5 4 8 8 H 1.08997 * 109.47024 * 60.00695 * 7 6 5 9 9 N 1.46899 * 109.47045 * 180.02562 * 7 6 5 10 10 C 1.46900 * 111.00103 * 295.00390 * 9 7 6 11 11 C 1.53234 * 109.34260 * 187.25275 * 10 9 7 12 12 N 1.47081 * 108.52211 * 306.16713 * 11 10 9 13 13 C 1.36931 * 120.88337 * 231.18614 * 12 11 10 14 14 H 1.08001 * 120.00230 * 27.10388 * 13 12 11 15 15 C 1.38809 * 120.00257 * 207.10576 * 13 12 11 16 16 N 1.31617 * 119.99828 * 16.77117 * 15 13 12 17 17 Si 1.86798 * 120.00290 * 197.05120 * 15 13 12 18 18 H 1.48494 * 109.47263 * 179.72237 * 17 15 13 19 19 H 1.48503 * 109.46973 * 299.72426 * 17 15 13 20 20 H 1.48501 * 109.47226 * 59.71793 * 17 15 13 21 21 C 1.47076 * 118.23323 * 51.45930 * 12 11 10 22 22 C 1.46897 * 111.00131 * 59.29968 * 9 7 6 23 23 C 1.52993 * 109.47540 * 120.00360 * 2 1 3 24 24 H 1.09003 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46920 * 299.99853 * 1 2 3 26 26 H 1.09001 * 109.47749 * 59.99522 * 1 2 3 27 27 H 1.09005 * 109.46887 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47532 * 59.99680 * 4 2 1 29 29 H 1.08995 * 109.47382 * 180.02562 * 5 4 2 30 30 H 1.09005 * 109.46887 * 60.00513 * 5 4 2 31 31 H 1.08997 * 109.46640 * 299.99913 * 6 5 4 32 32 H 1.08995 * 109.46788 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.49588 * 67.29097 * 10 9 7 34 34 H 1.09009 * 109.49234 * 307.21399 * 10 9 7 35 35 H 1.09006 * 109.62742 * 186.45826 * 11 10 9 36 36 H 1.09001 * 109.79112 * 65.97622 * 11 10 9 37 37 H 0.97007 * 120.00168 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.63359 * 68.25133 * 21 12 11 39 39 H 1.08999 * 109.62577 * 188.83428 * 21 12 11 40 40 H 1.08999 * 109.49916 * 292.71035 * 22 9 7 41 41 H 1.09004 * 109.48811 * 52.76397 * 22 9 7 42 42 H 1.09005 * 109.47051 * 300.00340 * 23 2 1 43 43 H 1.08997 * 109.47034 * 180.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5301 -2.1638 1.2490 8 1 0.4401 -2.1638 1.2491 9 7 2.0202 -2.8560 2.4484 10 6 1.4546 -4.2083 2.5439 11 6 1.8429 -4.8269 3.8910 12 7 3.3047 -4.7527 4.0352 13 6 4.0359 -5.8631 4.3631 14 1 3.6714 -6.8459 4.1029 15 6 5.2456 -5.7256 5.0299 16 7 5.5383 -4.5943 5.6354 17 14 6.4613 -7.1434 5.0611 18 1 7.6691 -6.7431 5.8267 19 1 5.8315 -8.3213 5.7103 20 1 6.8497 -7.4932 3.6711 21 6 3.9596 -3.4528 3.8240 22 6 3.4886 -2.8897 2.4737 23 6 2.0401 -0.7213 1.2491 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.1299 -0.7207 -1.2497 28 1 1.6765 -0.2073 -2.1393 29 1 1.8935 -2.6776 -2.1392 30 1 0.4399 -2.1637 -1.2494 31 1 3.1299 -2.8849 -0.0003 32 1 1.6770 -3.9127 -0.0006 33 1 1.8462 -4.8244 1.7344 34 1 0.3685 -4.1546 2.4679 35 1 1.5244 -5.8690 3.9208 36 1 1.3664 -4.2753 4.7015 37 1 6.3838 -4.4980 6.1011 38 1 3.6828 -2.7687 4.6260 39 1 5.0413 -3.5860 3.8094 40 1 3.8519 -3.5240 1.6652 41 1 3.8778 -1.8795 2.3463 42 1 1.6767 -0.2075 2.1392 43 1 3.1300 -0.7208 1.2492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:13 Heat of formation + Delta-G solvation = -5.023478 kcal Electronic energy + Delta-G solvation = -20049.775297 eV Core-core repulsion = 17321.943158 eV Total energy + Delta-G solvation = -2727.832138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96153 -38.60749 -35.91884 -33.38520 -32.49251 -31.59540 -30.43668 -27.71150 -27.50761 -24.94882 -24.28700 -23.22383 -22.36940 -20.63337 -19.26969 -18.57118 -17.29611 -16.72952 -16.03046 -15.69245 -15.50441 -15.24634 -15.20646 -15.04871 -14.66446 -14.45864 -14.22598 -13.53749 -13.25274 -13.14250 -12.94953 -12.61840 -12.59486 -12.58585 -12.35085 -12.11585 -11.96329 -11.92506 -11.81694 -11.59770 -11.37659 -11.15108 -11.03899 -10.74749 -10.57327 -9.12895 -8.66162 -7.87924 -5.33220 1.45300 1.47919 1.54994 2.50107 3.03616 3.27374 3.67861 3.75304 3.86703 4.00619 4.23583 4.26331 4.35958 4.38291 4.45568 4.47768 4.57609 4.60420 4.63195 4.70157 4.73627 4.85123 4.88782 4.93866 5.01634 5.06589 5.13457 5.17279 5.19784 5.27507 5.28897 5.36621 5.39362 5.47040 5.50798 5.59951 5.66307 5.68344 6.25477 6.37453 6.39413 7.12595 7.83398 8.38442 9.18615 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039172 B = 0.005179 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.622611 B = 5404.687241 C = 5445.761622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.148 4.148 7 C 0.087 3.913 8 H 0.089 0.911 9 N -0.537 5.537 10 C 0.056 3.944 11 C 0.143 3.857 12 N -0.613 5.613 13 C -0.267 4.267 14 H 0.067 0.933 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.292 1.292 19 H -0.274 1.274 20 H -0.279 1.279 21 C 0.186 3.814 22 C 0.053 3.947 23 C -0.104 4.104 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.014 0.986 37 H 0.250 0.750 38 H -0.004 1.004 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 8.205 -14.400 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.187 4.187 7 C -0.020 4.020 8 H 0.107 0.893 9 N -0.260 5.260 10 C -0.073 4.073 11 C 0.018 3.982 12 N -0.337 5.337 13 C -0.397 4.397 14 H 0.084 0.916 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.218 1.218 19 H -0.200 1.200 20 H -0.205 1.205 21 C 0.060 3.940 22 C -0.076 4.076 23 C -0.142 4.142 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.630 8.482 -13.874 18.898 hybrid contribution 1.298 -1.246 -0.038 1.799 sum -8.332 7.236 -13.912 17.757 Atomic orbital electron populations 1.21911 0.94493 1.02077 1.01953 1.21067 0.96600 0.99022 0.93711 0.90513 1.21566 1.00156 0.95332 0.97933 1.21474 1.01312 0.95646 0.96311 1.22156 1.00357 0.99363 0.96793 1.21838 0.99777 0.93787 0.86638 0.89330 1.62141 1.07371 1.17737 1.38791 1.22421 0.99199 0.88772 0.96914 1.21135 0.84250 0.98086 0.94758 1.44394 1.01754 1.06508 1.81069 1.19509 1.02583 0.87401 1.30191 0.91573 1.25812 1.01897 0.99673 0.97211 1.70189 1.23843 1.27520 1.36688 0.85314 0.78309 0.79089 0.77575 1.21829 1.19987 1.20516 1.20711 0.96503 0.84993 0.91772 1.22628 0.88225 0.99402 0.97362 1.21603 0.99980 0.94233 0.98412 0.92387 0.92851 0.91663 0.92906 0.90437 0.91891 0.90736 0.93606 0.93023 0.95728 0.89240 0.92313 0.96828 0.94046 0.98623 0.92752 0.96345 0.90539 0.92072 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.50 71.98 0.61 -1.78 16 2 C -0.09 -1.58 3.19 -10.80 -0.03 -1.61 16 3 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.11 -2.00 5.45 30.60 0.17 -1.83 16 5 C -0.11 -2.11 5.65 30.60 0.17 -1.94 16 6 C -0.15 -3.80 4.52 30.59 0.14 -3.66 16 7 C 0.09 2.37 1.96 44.91 0.09 2.46 16 8 H 0.09 2.23 6.35 -2.39 -0.02 2.21 16 9 N -0.54 -19.05 4.61 -869.08 -4.01 -23.06 16 10 C 0.06 2.01 5.14 86.38 0.44 2.45 16 11 C 0.14 6.32 6.69 86.35 0.58 6.89 16 12 N -0.61 -32.57 3.03 -697.26 -2.11 -34.68 16 13 C -0.27 -15.25 9.63 84.03 0.81 -14.44 16 14 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 15 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 16 N -0.94 -57.03 11.15 21.65 0.24 -56.79 16 17 Si 0.97 45.83 29.59 68.60 2.03 47.86 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C 0.19 9.58 5.44 86.50 0.47 10.05 16 22 C 0.05 2.15 4.78 86.54 0.41 2.56 16 23 C -0.10 -2.58 4.53 30.59 0.14 -2.44 16 24 H 0.06 0.98 4.81 -2.39 -0.01 0.97 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.29 6.43 -2.38 -0.02 1.27 16 31 H 0.05 1.35 6.56 -2.39 -0.02 1.33 16 32 H 0.05 1.41 6.69 -2.39 -0.02 1.40 16 33 H 0.02 0.91 6.81 -2.38 -0.02 0.90 16 34 H 0.09 2.66 8.05 -2.38 -0.02 2.64 16 35 H 0.06 2.47 7.95 -2.38 -0.02 2.45 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.05 3.11 6.13 -2.39 -0.01 3.10 16 40 H 0.02 0.78 6.71 -2.39 -0.02 0.76 16 41 H 0.08 2.84 5.97 -2.38 -0.01 2.83 16 42 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.05 1.39 6.27 -2.39 -0.01 1.38 16 Total: -1.00 -63.95 308.32 1.53 -62.42 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.96 Total: 10.02 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.42 Total: -5.77 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -5.88 Total: -114.53 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -63.95 1.53 -62.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.400 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds