Wall clock time and date at job start Mon Mar 30 2020 03:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 N 1.46906 * 109.47106 * 176.81432 * 3 2 1 5 5 C 1.46898 * 110.99903 * 164.86945 * 4 3 2 6 6 C 1.53001 * 109.47485 * 286.93566 * 5 4 3 7 7 C 1.50697 * 115.55575 * 149.25438 * 6 5 4 8 8 H 1.08002 * 119.99436 * 114.69938 * 7 6 5 9 9 C 1.37875 * 120.00156 * 294.70630 * 7 6 5 10 10 N 1.31519 * 119.99858 * 353.64776 * 9 7 6 11 11 Si 1.86795 * 119.99966 * 173.64393 * 9 7 6 12 12 H 1.48506 * 109.46958 * 60.00245 * 11 9 7 13 13 H 1.48498 * 109.47248 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47681 * 300.00388 * 11 9 7 15 15 C 1.53013 * 117.49647 * 3.54759 * 6 5 4 16 16 C 1.53003 * 59.99875 * 252.51505 * 15 6 5 17 17 C 1.46892 * 111.00036 * 288.82361 * 4 3 2 18 18 H 1.09004 * 110.27405 * 51.19334 * 17 4 3 19 19 C 1.54593 * 110.30937 * 173.38616 * 17 4 3 20 20 C 1.54936 * 102.92124 * 140.87280 * 19 17 4 21 21 N 1.48531 * 103.23089 * 322.58823 * 20 19 17 22 22 C 1.47900 * 105.81772 * 39.20371 * 21 20 19 23 23 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46902 * 300.00070 * 1 2 3 25 25 H 1.09000 * 109.47494 * 59.99340 * 1 2 3 26 26 H 1.09001 * 109.46902 * 239.99930 * 2 1 3 27 27 H 1.09006 * 109.47155 * 120.00408 * 2 1 3 28 28 H 1.09000 * 109.47119 * 56.81520 * 3 2 1 29 29 H 1.09007 * 109.47181 * 296.81491 * 3 2 1 30 30 H 1.08998 * 109.47477 * 46.93205 * 5 4 3 31 31 H 1.08998 * 109.46986 * 166.93553 * 5 4 3 32 32 H 0.97001 * 119.99568 * 185.01021 * 10 9 7 33 33 H 1.09001 * 117.49841 * 0.02562 * 15 6 5 34 34 H 1.08995 * 117.49658 * 145.02496 * 15 6 5 35 35 H 1.09008 * 117.49292 * 252.50963 * 16 15 6 36 36 H 1.08996 * 117.50185 * 107.49571 * 16 15 6 37 37 H 1.08997 * 110.72715 * 259.23019 * 19 17 4 38 38 H 1.09005 * 110.72238 * 22.33982 * 19 17 4 39 39 H 1.09005 * 110.67108 * 204.14869 * 20 19 17 40 40 H 1.08998 * 110.66778 * 81.02540 * 20 19 17 41 41 H 1.00900 * 110.99603 * 278.69596 * 21 20 19 42 42 H 1.08999 * 109.91475 * 94.02421 * 22 21 20 43 43 H 1.08999 * 109.91860 * 215.12278 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5070 1.4431 0.0770 5 6 4.0522 2.7603 -0.2774 6 6 3.9215 2.9774 -1.7863 7 6 3.7344 4.4073 -2.2236 8 1 4.4963 4.8957 -2.8131 9 6 2.5909 5.0921 -1.8711 10 7 1.6093 4.4634 -1.2620 11 14 2.4357 6.9129 -2.2583 12 1 2.5383 7.1173 -3.7257 13 1 1.1206 7.4103 -1.7806 14 1 3.5246 7.6585 -1.5774 15 6 3.2112 1.8915 -2.5973 16 6 4.7284 2.0575 -2.7048 17 6 3.9645 1.0250 1.4088 18 1 3.4864 0.0883 1.6955 19 6 5.5027 0.8713 1.4240 20 6 5.8938 1.4379 2.8119 21 7 4.9572 2.5769 2.9903 22 6 3.6595 2.1206 2.4471 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6308 1.9725 0.8601 29 1 1.7240 1.9396 -0.9172 30 1 3.4985 3.5367 0.2505 31 1 5.1035 2.8068 0.0066 32 1 0.7766 4.9261 -1.0791 33 1 2.8368 1.0228 -2.0558 34 1 2.6085 2.2114 -3.4472 35 1 5.1237 2.4866 -3.6256 36 1 5.3524 1.2978 -2.2341 37 1 5.7864 -0.1779 1.3418 38 1 5.9567 1.4559 0.6238 39 1 6.9267 1.7861 2.8083 40 1 5.7419 0.6895 3.5897 41 1 5.2863 3.3956 2.5010 42 1 3.0446 1.7116 3.2487 43 1 3.1426 2.9538 1.9710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:58 Heat of formation + Delta-G solvation = 19.702617 kcal Electronic energy + Delta-G solvation = -20447.854298 eV Core-core repulsion = 17721.094364 eV Total energy + Delta-G solvation = -2726.759934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85105 -38.33138 -36.21438 -34.01314 -33.52666 -30.38963 -28.95688 -28.28513 -27.16311 -24.63449 -23.09120 -22.71675 -21.92191 -21.15282 -19.60861 -18.37754 -17.56710 -16.61522 -16.56453 -16.08939 -15.79759 -15.35371 -15.17723 -14.70768 -14.32647 -14.13943 -13.65499 -13.28580 -13.09249 -13.06445 -12.84956 -12.72088 -12.49055 -12.45562 -12.36056 -12.09830 -11.98789 -11.84989 -11.75608 -11.51041 -11.21374 -10.96322 -10.81087 -10.34713 -9.87005 -9.68877 -8.81551 -8.05560 -6.15864 1.40431 1.42477 1.48371 2.42721 3.03197 3.22177 3.48058 3.64593 3.87955 3.90528 4.20463 4.27477 4.33393 4.41526 4.51344 4.56870 4.58744 4.62743 4.71618 4.80458 4.81970 4.94895 4.97249 4.99055 5.06304 5.10107 5.14500 5.17293 5.23714 5.31769 5.34630 5.48130 5.52399 5.66347 5.69960 5.78853 5.79555 5.91630 6.28717 6.32534 6.54547 6.63299 6.90206 7.48973 8.97943 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.008623 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.840741 B = 3246.251199 C = 3769.571252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.058 3.942 4 N -0.521 5.521 5 C 0.120 3.880 6 C 0.029 3.971 7 C -0.519 4.519 8 H 0.044 0.956 9 C 0.036 3.964 10 N -0.887 5.887 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.167 4.167 16 C -0.189 4.189 17 C 0.052 3.948 18 H 0.093 0.907 19 C -0.145 4.145 20 C 0.047 3.953 21 N -0.679 5.679 22 C 0.017 3.983 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.006 0.994 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.257 0.743 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.333 0.667 42 H 0.072 0.928 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -8.649 6.586 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.070 4.070 4 N -0.244 5.244 5 C -0.008 4.008 6 C 0.028 3.972 7 C -0.557 4.557 8 H 0.063 0.937 9 C -0.166 4.166 10 N -0.524 5.524 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.200 1.200 15 C -0.205 4.205 16 C -0.226 4.226 17 C -0.058 4.058 18 H 0.111 0.889 19 C -0.185 4.185 20 C -0.083 4.083 21 N -0.306 5.306 22 C -0.115 4.115 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.148 0.852 42 H 0.090 0.910 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.870 -9.029 7.111 11.846 hybrid contribution -0.593 1.952 -0.934 2.243 sum 2.277 -7.078 6.177 9.666 Atomic orbital electron populations 1.21667 0.95255 1.01952 1.01243 1.21484 0.95770 0.95840 1.01766 1.22218 0.86772 0.96408 1.01588 1.62261 1.09187 1.27931 1.24993 1.21264 0.96227 0.87998 0.95311 1.18937 0.99258 0.89702 0.89326 1.20758 1.04231 0.96793 1.33933 0.93730 1.25492 0.95680 1.00840 0.94601 1.70012 1.03924 1.37216 1.41232 0.85895 0.77063 0.81979 0.78297 1.20363 1.21100 1.20020 1.22749 0.92764 1.02652 1.02315 1.22791 0.94188 1.03934 1.01646 1.23112 0.96601 0.98153 0.87938 0.88854 1.23163 0.93977 1.02834 0.98480 1.23179 0.96578 0.93146 0.95368 1.62737 1.03264 1.06991 1.57617 1.23292 0.93073 0.98149 0.96940 0.90953 0.93243 0.93910 0.92183 0.91709 0.97586 0.89458 0.96489 0.93094 0.93344 0.88480 0.94012 0.91835 0.89756 0.89382 0.91929 0.89470 0.89225 0.85160 0.90987 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.91 71.98 0.71 -3.26 16 2 C -0.11 -3.40 5.92 30.59 0.18 -3.22 16 3 C 0.06 2.23 3.48 86.30 0.30 2.53 16 4 N -0.52 -19.20 3.54 -865.86 -3.07 -22.27 16 5 C 0.12 5.19 3.91 86.30 0.34 5.53 16 6 C 0.03 1.38 1.60 -52.92 -0.08 1.29 16 7 C -0.52 -28.13 8.81 25.60 0.23 -27.91 16 8 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 9 C 0.04 1.90 5.21 84.65 0.44 2.34 16 10 N -0.89 -47.99 11.79 21.45 0.25 -47.74 16 11 Si 0.94 43.00 29.55 68.60 2.03 45.03 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 C -0.17 -7.73 8.02 30.60 0.25 -7.49 16 16 C -0.19 -8.21 9.93 30.60 0.30 -7.91 16 17 C 0.05 1.60 2.95 45.79 0.13 1.73 16 18 H 0.09 2.62 6.40 -2.39 -0.02 2.61 16 19 C -0.15 -3.82 6.43 31.80 0.20 -3.62 16 20 C 0.05 1.09 7.55 86.65 0.65 1.74 16 21 N -0.68 -19.65 7.51 -502.21 -3.77 -23.42 16 22 C 0.02 0.55 6.01 86.45 0.52 1.07 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.88 7.47 -2.39 -0.02 1.86 16 27 H 0.06 1.77 6.50 -2.38 -0.02 1.76 16 28 H 0.01 0.24 6.87 -2.39 -0.02 0.23 16 29 H 0.09 4.03 4.75 -2.38 -0.01 4.01 16 30 H 0.02 0.85 5.75 -2.39 -0.01 0.83 16 31 H 0.05 2.12 5.81 -2.39 -0.01 2.10 16 32 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 33 H 0.10 4.24 4.69 -2.39 -0.01 4.23 16 34 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.90 5.99 -2.38 -0.01 1.88 16 39 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.33 10.12 8.92 -89.69 -0.80 9.32 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.71 5.45 -2.39 -0.01 1.70 16 Total: -1.00 -55.22 319.60 -0.19 -55.41 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.19 Total: 30.16 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.18 Total: -37.17 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -6.59 Total: -93.43 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -55.22 -0.19 -55.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.114 kcal (2) G-P(sol) polarization free energy of solvation -55.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds