Wall clock time and date at job start Mon Mar 30 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.48787 * 2 1 4 4 C 1.53053 * 109.48587 * 239.95934 * 2 1 3 5 5 N 1.46963 * 109.35964 * 181.61294 * 4 2 1 6 6 C 1.46953 * 110.88355 * 59.32018 * 5 4 2 7 7 C 1.53055 * 109.36307 * 300.67897 * 6 5 4 8 8 H 1.08996 * 109.48717 * 298.41108 * 7 6 5 9 9 C 1.50704 * 109.48795 * 178.36893 * 7 6 5 10 10 H 1.08003 * 119.99696 * 245.53109 * 9 7 6 11 11 C 1.37875 * 119.99908 * 65.52855 * 9 7 6 12 12 N 1.31513 * 119.99953 * 180.02562 * 11 9 7 13 13 Si 1.86797 * 120.00224 * 0.02562 * 11 9 7 14 14 H 1.48500 * 109.47014 * 269.99803 * 13 11 9 15 15 H 1.48496 * 109.47420 * 150.00101 * 13 11 9 16 16 H 1.48498 * 109.47239 * 29.99877 * 13 11 9 17 17 N 1.46957 * 109.50464 * 120.03751 * 2 1 3 18 18 C 1.46906 * 111.01743 * 303.15609 * 17 2 1 19 19 C 1.52996 * 109.47132 * 83.12394 * 18 17 2 20 20 C 1.53000 * 109.46743 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47437 * 60.00054 * 20 19 18 22 22 C 1.52995 * 109.46836 * 299.99987 * 21 20 19 23 23 C 1.52997 * 109.47446 * 60.00205 * 22 21 20 24 24 H 1.09006 * 109.47255 * 194.85081 * 1 2 3 25 25 H 1.08999 * 109.47319 * 314.85440 * 1 2 3 26 26 H 1.09002 * 109.47427 * 74.85290 * 1 2 3 27 27 H 1.08997 * 109.49077 * 61.64679 * 4 2 1 28 28 H 1.09006 * 109.50605 * 301.58505 * 4 2 1 29 29 H 1.00899 * 110.99465 * 295.45169 * 5 4 2 30 30 H 1.08994 * 109.48799 * 180.71282 * 6 5 4 31 31 H 1.08998 * 109.48887 * 60.64252 * 6 5 4 32 32 H 0.97003 * 120.00345 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.46963 * 203.12364 * 18 17 2 34 34 H 1.08998 * 109.47172 * 299.99842 * 19 18 17 35 35 H 1.09005 * 109.47172 * 60.00041 * 19 18 17 36 36 H 1.08998 * 109.47006 * 299.99758 * 20 19 18 37 37 H 1.09003 * 109.46965 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47137 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46810 * 59.99616 * 21 20 19 40 40 H 1.09000 * 109.47118 * 299.99439 * 22 21 20 41 41 H 1.09005 * 109.46897 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47313 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47587 * 59.99522 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7546 -1.2269 6 6 4.0004 -1.4484 -0.0280 7 6 3.4897 -0.7260 1.2211 8 1 3.8760 0.2931 1.2351 9 6 3.9581 -1.4583 2.4521 10 1 3.2399 -1.9353 3.1027 11 6 5.3034 -1.5194 2.7479 12 7 5.7122 -2.1589 3.8219 13 14 6.5454 -0.6939 1.6230 14 1 6.9847 -1.6556 0.5803 15 1 7.7201 -0.2563 2.4191 16 1 5.9189 0.4865 0.9754 17 7 2.0207 -0.6934 1.1992 18 6 1.4896 -0.0735 2.4206 19 6 0.0894 -0.6214 2.7033 20 6 -0.4639 0.0247 3.9750 21 6 -0.5382 1.5412 3.7859 22 6 0.8620 2.0890 3.5031 23 6 1.4153 1.4430 2.2314 24 1 -0.3634 -0.9934 0.2634 25 1 -0.3634 0.7248 0.7285 26 1 -0.3634 0.2685 -0.9920 27 1 1.7018 -0.1927 -2.1394 28 1 1.6546 -1.7417 -1.2633 29 1 3.8927 0.1769 -1.2878 30 1 5.0903 -1.4480 -0.0282 31 1 3.6366 -2.4759 -0.0280 32 1 6.6586 -2.2015 4.0302 33 1 2.1461 -0.3036 3.2598 34 1 -0.5671 -0.3913 1.8641 35 1 0.1423 -1.7019 2.8376 36 1 0.1925 -0.2050 4.8144 37 1 -1.4616 -0.3653 4.1762 38 1 -0.9328 2.0014 4.6917 39 1 -1.1945 1.7708 2.9465 40 1 1.5184 1.8594 4.3425 41 1 0.8090 3.1694 3.3679 42 1 2.4127 1.8337 2.0297 43 1 0.7590 1.6726 1.3920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221594698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:45 Heat of formation + Delta-G solvation = -10.186363 kcal Electronic energy + Delta-G solvation = -20832.140110 eV Core-core repulsion = 18104.084092 eV Total energy + Delta-G solvation = -2728.056018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36238 -38.48021 -35.28217 -34.87154 -33.18619 -31.64886 -30.22002 -28.74582 -27.04235 -24.68418 -23.68725 -22.62980 -22.53064 -20.84467 -20.22597 -18.83529 -17.46037 -16.71059 -16.32254 -16.05303 -15.99757 -15.29986 -15.14336 -14.83136 -14.57214 -14.20587 -13.95836 -13.66543 -13.27948 -13.27665 -13.11000 -12.99875 -12.76326 -12.52354 -12.34888 -12.16571 -11.95043 -11.78699 -11.70647 -11.55320 -11.30727 -11.08998 -11.03870 -10.84291 -10.70216 -9.33196 -8.84955 -8.32778 -6.33873 1.25677 1.27598 1.36189 2.25342 2.99910 3.08288 3.43381 3.84166 3.92311 4.05250 4.11829 4.27132 4.30133 4.37497 4.38497 4.43207 4.58151 4.59218 4.66489 4.69775 4.72553 4.76695 4.80746 4.91209 5.01426 5.02911 5.14082 5.15265 5.22132 5.26681 5.29005 5.33408 5.39129 5.41962 5.49911 5.61817 5.69348 5.98979 6.09322 6.41372 6.47352 6.70498 6.77676 7.28929 8.83637 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.009772 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.505599 B = 2864.591156 C = 3707.603127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 H 0.032 0.968 4 C 0.067 3.933 5 N -0.692 5.692 6 C 0.066 3.934 7 C 0.165 3.835 8 H -0.017 1.017 9 C -0.498 4.498 10 H 0.038 0.962 11 C 0.016 3.984 12 N -0.944 5.944 13 Si 0.939 3.061 14 H -0.263 1.263 15 H -0.293 1.293 16 H -0.255 1.255 17 N -0.524 5.524 18 C 0.090 3.910 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.336 0.664 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.266 0.734 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.827 9.131 -7.234 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 H 0.050 0.950 4 C -0.062 4.062 5 N -0.319 5.319 6 C -0.064 4.064 7 C 0.055 3.945 8 H 0.000 1.000 9 C -0.536 4.536 10 H 0.056 0.944 11 C -0.181 4.181 12 N -0.585 5.585 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.221 1.221 16 H -0.179 1.179 17 N -0.248 5.248 18 C -0.018 4.018 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.181 4.181 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.781 7.999 -7.602 16.886 hybrid contribution 1.618 1.255 1.083 2.317 sum -11.163 9.255 -6.519 15.898 Atomic orbital electron populations 1.22209 0.92510 1.02589 1.02755 1.22530 0.97640 0.95372 0.91829 0.94981 1.22235 0.86476 1.01268 0.96239 1.60848 1.08946 1.22734 1.39341 1.22253 0.97725 0.98649 0.87764 1.20098 0.86482 0.93252 0.94694 0.99992 1.21061 0.92168 1.32911 1.07507 0.94365 1.25704 1.00251 0.95718 0.96466 1.70023 1.16062 1.44542 1.27826 0.85980 0.78581 0.79999 0.78941 1.18845 1.22051 1.17915 1.62231 1.07915 1.52820 1.01808 1.21585 0.96259 0.91562 0.92428 1.22030 0.95395 0.98812 0.99348 1.21547 1.00843 0.96286 0.96968 1.21476 0.95909 0.94696 1.02425 1.21487 0.97294 0.99986 0.96561 1.22257 0.99700 0.96410 0.99751 0.91770 0.90995 0.90189 0.87887 0.91193 0.84780 0.93188 0.91875 0.92523 0.93585 0.88114 0.94284 0.94393 0.90228 0.90804 0.90430 0.94237 0.90750 0.95434 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.20 71.98 0.52 -2.81 16 2 C 0.04 1.11 1.93 44.92 0.09 1.20 16 3 H 0.03 1.01 6.53 -2.39 -0.02 1.00 16 4 C 0.07 1.98 5.95 86.31 0.51 2.50 16 5 N -0.69 -24.17 6.91 -513.42 -3.55 -27.72 16 6 C 0.07 2.88 5.58 86.31 0.48 3.37 16 7 C 0.16 7.76 1.45 44.18 0.06 7.83 16 8 H -0.02 -0.86 6.32 -2.39 -0.02 -0.87 16 9 C -0.50 -28.61 7.90 25.60 0.20 -28.41 16 10 H 0.04 2.48 7.26 -2.91 -0.02 2.46 16 11 C 0.02 0.96 5.45 84.65 0.46 1.42 16 12 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 13 Si 0.94 45.31 24.66 68.60 1.69 47.00 16 14 H -0.26 -12.16 6.89 99.48 0.69 -11.48 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.25 -11.58 6.39 99.48 0.64 -10.94 16 17 N -0.52 -20.97 4.26 -824.81 -3.51 -24.48 16 18 C 0.09 3.44 1.85 44.91 0.08 3.53 16 19 C -0.12 -3.72 4.85 30.59 0.15 -3.57 16 20 C -0.12 -3.16 5.92 30.59 0.18 -2.98 16 21 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 22 C -0.12 -3.15 5.92 30.59 0.18 -2.97 16 23 C -0.14 -4.56 3.91 30.60 0.12 -4.44 16 24 H 0.06 1.60 7.01 -2.38 -0.02 1.58 16 25 H 0.07 1.57 4.42 -2.39 -0.01 1.56 16 26 H 0.08 1.41 8.06 -2.39 -0.02 1.39 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.34 10.97 8.89 -89.69 -0.80 10.17 16 30 H 0.05 2.28 4.04 -2.39 -0.01 2.27 16 31 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.05 2.25 5.98 -2.39 -0.01 2.24 16 34 H 0.10 2.65 3.75 -2.39 -0.01 2.64 16 35 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.03 1.00 7.61 -2.39 -0.02 0.98 16 43 H 0.09 2.43 4.41 -2.39 -0.01 2.42 16 Total: -1.00 -65.75 298.02 -1.74 -67.48 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.11 Total: 24.39 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.22 Total: -27.58 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -6.76 Total: -111.29 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.69 Total: 47.00 kcal Total: -65.75 -1.74 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221594698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.298 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds