Wall clock time and date at job start Mon Mar 30 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50456 * 2 1 4 4 C 1.53054 * 109.49102 * 120.05851 * 2 1 3 5 5 N 1.46952 * 109.38105 * 178.36050 * 4 2 1 6 6 C 1.46904 * 110.99661 * 176.82164 * 5 4 2 7 7 C 1.54267 * 110.03473 * 60.19685 * 6 5 4 8 8 C 1.54893 * 104.19527 * 217.10775 * 7 6 5 9 9 C 1.54886 * 102.75072 * 37.93795 * 8 7 6 10 10 C 1.53881 * 110.03141 * 303.03083 * 6 5 4 11 11 C 1.46951 * 110.87936 * 300.70815 * 5 4 2 12 12 H 1.09005 * 109.47525 * 299.32190 * 11 5 4 13 13 C 1.50704 * 109.50803 * 179.28270 * 11 5 4 14 14 H 1.07997 * 119.99808 * 354.67730 * 13 11 5 15 15 C 1.37871 * 120.00277 * 174.68885 * 13 11 5 16 16 N 1.31518 * 120.00012 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00049 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47088 * 119.99752 * 17 15 13 20 20 H 1.48501 * 109.46895 * 239.99389 * 17 15 13 21 21 C 1.53048 * 109.38424 * 59.29148 * 11 5 4 22 22 N 1.46954 * 109.48850 * 239.94808 * 2 1 3 23 23 C 1.46900 * 111.00468 * 56.84425 * 22 2 1 24 24 H 1.09000 * 109.47128 * 299.94357 * 1 2 3 25 25 H 1.08992 * 109.47076 * 59.94627 * 1 2 3 26 26 H 1.09008 * 109.46845 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.48349 * 298.33800 * 4 2 1 28 28 H 1.09002 * 109.48644 * 58.37603 * 4 2 1 29 29 H 1.09006 * 110.01736 * 181.64324 * 6 5 4 30 30 H 1.09002 * 110.48296 * 335.78227 * 7 6 5 31 31 H 1.08993 * 110.48516 * 98.42690 * 7 6 5 32 32 H 1.09003 * 110.75115 * 279.62535 * 8 7 6 33 33 H 1.09001 * 110.75561 * 156.26104 * 8 7 6 34 34 H 1.09002 * 110.48608 * 203.37772 * 9 8 7 35 35 H 1.09002 * 110.59321 * 80.79680 * 9 8 7 36 36 H 1.09004 * 110.02860 * 238.57211 * 10 6 5 37 37 H 1.08995 * 110.03107 * 359.94771 * 10 6 5 38 38 H 0.96997 * 120.00043 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.49315 * 181.64204 * 21 11 5 40 40 H 1.09000 * 109.50626 * 61.58320 * 21 11 5 41 41 H 1.08999 * 109.47197 * 59.99365 * 23 22 2 42 42 H 1.08993 * 109.47759 * 180.02562 * 23 22 2 43 43 H 1.09005 * 109.46637 * 300.00010 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7227 1.2488 5 7 3.5097 -0.7557 1.2266 6 6 4.0407 -1.3760 2.4478 7 6 3.5267 -2.8253 2.5710 8 6 3.2858 -3.0152 4.0892 9 6 2.7225 -1.6384 4.5208 10 6 3.5293 -0.6214 3.6876 11 6 3.9999 -1.4490 0.0273 12 1 3.6360 -2.4765 0.0272 13 6 5.5070 -1.4495 0.0270 14 1 6.0473 -0.9086 0.7898 15 6 6.1960 -2.1404 -0.9471 16 7 5.5381 -2.7993 -1.8758 17 14 8.0640 -2.1404 -0.9478 18 1 8.5594 -1.3299 0.1936 19 1 8.5591 -3.5344 -0.8173 20 1 8.5585 -1.5566 -2.2205 21 6 3.4894 -0.7264 -1.2215 22 7 2.0203 -0.6938 -1.1991 23 6 1.4889 -0.0739 -2.4203 24 1 -0.3633 0.5130 0.8905 25 1 -0.3633 0.5146 -0.8894 26 1 -0.3633 -1.0278 -0.0005 27 1 1.7022 -0.1931 2.1393 28 1 1.6541 -1.7417 1.2628 29 1 5.1305 -1.3660 2.4279 30 1 2.5950 -2.9478 2.0187 31 1 4.2787 -3.5284 2.2131 32 1 4.2221 -3.2283 4.6051 33 1 2.5561 -3.8048 4.2688 34 1 2.8875 -1.4756 5.5859 35 1 1.6606 -1.5678 4.2851 36 1 4.3710 -0.2459 4.2696 37 1 2.8879 0.2055 3.3831 38 1 6.0228 -3.2857 -2.5609 39 1 3.8278 -1.2560 -2.1121 40 1 3.8755 0.2928 -1.2357 41 1 1.8048 0.9683 -2.4658 42 1 1.8670 -0.6069 -3.2926 43 1 0.4000 -0.1233 -2.4086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221595535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:40 Heat of formation + Delta-G solvation = 7.009524 kcal Electronic energy + Delta-G solvation = -20535.606516 eV Core-core repulsion = 17808.296167 eV Total energy + Delta-G solvation = -2727.310348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.30541 -37.08337 -34.00092 -32.68888 -31.10025 -28.44139 -28.10179 -27.03140 -25.41795 -24.08460 -22.77559 -20.80800 -20.28766 -19.14565 -18.11730 -16.38193 -15.73809 -15.06494 -14.69727 -14.54518 -14.01154 -13.80682 -13.59552 -13.49329 -13.00115 -12.52385 -12.20881 -11.89872 -11.67787 -11.54880 -11.23046 -10.99398 -10.84027 -10.72585 -10.68236 -10.61716 -10.53028 -10.34493 -10.28185 -10.09624 -9.93399 -9.75701 -9.39957 -8.83597 -8.45545 -7.46618 -7.01993 -6.02625 -4.06312 3.28963 3.37451 3.41642 4.40237 4.75138 4.89725 5.13801 5.20633 5.30784 5.37498 5.49918 5.72375 5.77344 5.87864 5.92546 6.00883 6.03055 6.04037 6.11547 6.14183 6.17266 6.24240 6.28492 6.32778 6.36186 6.38681 6.47571 6.58627 6.64733 6.74076 6.86980 6.91131 6.93643 7.12921 7.41516 7.64150 7.80651 7.93931 8.02706 8.19274 8.35821 8.66821 9.03647 9.59026 11.05075 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.010691 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.810104 B = 2618.341244 C = 4118.733606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.037 0.963 4 C 0.060 3.940 5 N -0.532 5.532 6 C 0.095 3.905 7 C -0.151 4.151 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.223 3.777 12 H 0.017 0.983 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.071 3.929 22 N -0.544 5.544 23 C 0.027 3.973 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.062 0.938 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 3.116 6.639 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.068 4.068 5 N -0.256 5.256 6 C -0.014 4.014 7 C -0.190 4.190 8 C -0.160 4.160 9 C -0.161 4.161 10 C -0.162 4.162 11 C 0.116 3.884 12 H 0.034 0.966 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.056 4.056 22 N -0.269 5.269 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.410 3.020 6.455 10.280 hybrid contribution 1.029 -0.039 -0.239 1.057 sum -6.381 2.980 6.216 9.393 Atomic orbital electron populations 1.21866 0.95526 1.01945 1.00808 1.21592 0.93740 0.95830 0.91409 0.94553 1.22117 0.90445 0.98483 0.95783 1.62428 1.05282 1.54533 1.03347 1.22171 1.00496 0.90005 0.88717 1.22961 1.01630 0.99596 0.94800 1.22445 1.00048 0.96471 0.97073 1.22352 0.99347 0.95647 0.98740 1.22322 0.99360 0.98265 0.96218 1.19217 0.94087 0.91616 0.83434 0.96579 1.21134 0.90374 1.30664 1.12134 0.91847 1.24952 0.98328 0.95203 0.95566 1.69941 1.35053 1.32630 1.15103 0.86528 0.85845 0.77646 0.77942 1.19732 1.21123 1.21110 1.22429 0.81933 0.98352 1.02906 1.62333 1.11945 1.52021 1.00576 1.22313 0.99521 0.96449 0.93853 0.92925 0.92861 0.92226 0.91873 0.94824 0.89002 0.91696 0.91444 0.91962 0.92609 0.92574 0.92314 0.92349 0.91288 0.92995 0.88464 0.96719 0.96808 0.91933 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.86 37.16 0.33 -1.76 16 2 C 0.08 1.53 2.56 -67.65 -0.17 1.36 16 3 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.06 1.14 4.22 -3.77 -0.02 1.12 16 5 N -0.53 -11.41 4.51 -218.60 -0.99 -12.39 16 6 C 0.10 1.85 2.73 -66.59 -0.18 1.66 16 7 C -0.15 -2.79 5.13 -25.07 -0.13 -2.92 16 8 C -0.12 -1.81 6.91 -24.74 -0.17 -1.98 16 9 C -0.12 -1.69 6.83 -25.08 -0.17 -1.86 16 10 C -0.12 -1.96 5.91 -25.61 -0.15 -2.11 16 11 C 0.22 5.56 1.56 -68.81 -0.11 5.45 16 12 H 0.02 0.46 7.25 -51.93 -0.38 0.09 16 13 C -0.50 -13.51 7.71 -34.44 -0.27 -13.78 16 14 H 0.06 1.72 6.70 -52.49 -0.35 1.37 16 15 C 0.06 1.67 5.33 -17.82 -0.09 1.57 16 16 N -0.89 -25.02 11.74 55.43 0.65 -24.37 16 17 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.07 1.72 4.71 -3.77 -0.02 1.71 16 22 N -0.54 -11.27 4.78 -234.73 -1.12 -12.39 16 23 C 0.03 0.48 9.13 60.06 0.55 1.03 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 26 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.06 1.06 6.05 -51.93 -0.31 0.75 16 28 H 0.03 0.67 6.08 -51.93 -0.32 0.35 16 29 H 0.09 1.98 6.36 -51.93 -0.33 1.65 16 30 H 0.06 1.27 5.62 -51.93 -0.29 0.98 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.10 2.61 6.54 -51.93 -0.34 2.27 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 43 H 0.06 0.88 6.25 -51.93 -0.32 0.56 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -27.57 312.87 -9.87 -37.44 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.50 Total: 1.43 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.60 Total: -10.51 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.46 Total: -49.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.57 -9.87 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.447 kcal (2) G-P(sol) polarization free energy of solvation -27.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds