Wall clock time and date at job start Mon Mar 30 2020 04:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.61041 * 2 1 4 4 C 1.54252 * 109.61037 * 239.48005 * 2 1 3 5 5 C 1.46134 * 111.90451 * 161.64000 * 4 2 1 6 6 N 1.48108 * 112.19383 * 60.86639 * 5 4 2 7 7 C 1.46901 * 110.99754 * 156.49017 * 6 5 4 8 8 C 1.54263 * 110.03285 * 53.38702 * 7 6 5 9 9 C 1.54961 * 104.16332 * 217.13420 * 8 7 6 10 10 C 1.54888 * 102.77422 * 37.88816 * 9 8 7 11 11 C 1.53871 * 110.03440 * 296.16961 * 7 6 5 12 12 C 1.44259 * 109.98080 * 279.71888 * 6 5 4 13 13 H 1.08993 * 108.87268 * 333.10779 * 12 6 5 14 14 C 1.50702 * 108.86454 * 214.68653 * 12 6 5 15 15 H 1.07993 * 120.00303 * 305.09436 * 14 12 6 16 16 C 1.37881 * 119.99536 * 125.09717 * 14 12 6 17 17 N 1.31510 * 119.99880 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 120.00032 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47411 * 90.00151 * 18 16 14 20 20 H 1.48505 * 109.46819 * 210.00210 * 18 16 14 21 21 H 1.48502 * 109.47187 * 329.99775 * 18 16 14 22 22 C 1.53939 * 112.54291 * 93.90229 * 12 6 5 23 23 N 1.44263 * 109.60737 * 120.33509 * 2 1 3 24 24 H 1.09005 * 109.47010 * 299.66709 * 1 2 3 25 25 H 1.08994 * 109.47185 * 59.66487 * 1 2 3 26 26 H 1.09002 * 109.47294 * 179.66791 * 1 2 3 27 27 H 1.08997 * 108.99310 * 282.26008 * 4 2 1 28 28 H 1.08998 * 108.98949 * 41.09791 * 4 2 1 29 29 H 1.09001 * 108.93394 * 300.16706 * 5 4 2 30 30 H 1.08996 * 108.93617 * 181.56789 * 5 4 2 31 31 H 1.09002 * 110.01719 * 174.78202 * 7 6 5 32 32 H 1.08994 * 110.49131 * 335.78774 * 8 7 6 33 33 H 1.09009 * 110.48358 * 98.42846 * 8 7 6 34 34 H 1.09004 * 110.72195 * 279.58064 * 9 8 7 35 35 H 1.08999 * 110.92802 * 156.29939 * 9 8 7 36 36 H 1.09003 * 110.48879 * 203.40252 * 10 9 8 37 37 H 1.09007 * 110.48589 * 80.76727 * 10 9 8 38 38 H 1.09001 * 110.03750 * 238.57185 * 11 7 6 39 39 H 1.09001 * 110.03487 * 0.02562 * 11 7 6 40 40 H 0.96999 * 120.00061 * 179.97438 * 17 16 14 41 41 H 1.08998 * 108.82377 * 79.22847 * 22 12 6 42 42 H 1.09001 * 108.81588 * 197.52576 * 22 12 6 43 43 H 1.00899 * 110.99770 * 86.68541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0477 -0.7379 -1.2517 5 6 3.4429 -0.4115 -1.5390 6 7 4.3472 -0.7974 -0.4313 7 6 5.7205 -0.9902 -0.9159 8 6 6.1888 0.2602 -1.6884 9 6 7.0416 -0.3091 -2.8502 10 6 6.2649 -1.5881 -3.2503 11 6 5.7692 -2.1651 -1.9083 12 6 4.3020 0.1983 0.6116 13 1 4.0326 1.1582 0.1712 14 6 5.6703 0.3167 1.2319 15 1 6.1615 -0.5599 1.6277 16 6 6.2952 1.5442 1.2940 17 7 7.4895 1.6475 1.8348 18 14 5.4453 3.0605 0.6100 19 1 4.6340 3.6975 1.6781 20 1 6.4662 4.0229 0.1233 21 1 4.5602 2.6666 -0.5156 22 6 3.2841 -0.1471 1.7136 23 7 2.0141 -0.6864 1.1729 24 1 -0.3633 0.5087 0.8930 25 1 -0.3633 0.5190 -0.8869 26 1 -0.3634 -1.0277 -0.0060 27 1 1.9606 -1.8125 -1.0914 28 1 1.4351 -0.4563 -2.1082 29 1 3.5275 0.6622 -1.7071 30 1 3.7494 -0.9349 -2.4446 31 1 6.3888 -1.1826 -0.0765 32 1 5.3326 0.8108 -2.0781 33 1 6.7951 0.9000 -1.0471 34 1 8.0452 -0.5587 -2.5057 35 1 7.0841 0.3933 -3.6826 36 1 6.9269 -2.2962 -3.7488 37 1 5.4208 -1.3366 -3.8926 38 1 6.4617 -2.9273 -1.5510 39 1 4.7738 -2.5920 -2.0308 40 1 7.9292 2.5110 1.8782 41 1 3.7254 -0.8880 2.3802 42 1 3.0676 0.7542 2.2871 43 1 2.0841 -1.6793 1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221598236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:11 Heat of formation + Delta-G solvation = 5.721198 kcal Electronic energy + Delta-G solvation = -20925.449479 eV Core-core repulsion = 18198.083264 eV Total energy + Delta-G solvation = -2727.366214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57788 -37.00377 -34.17276 -32.80381 -31.68190 -28.93415 -28.21793 -27.54047 -25.57427 -23.79612 -22.47022 -20.97617 -19.94722 -19.40696 -18.18103 -16.78457 -15.99559 -15.33853 -14.92473 -14.59346 -14.07680 -13.89890 -13.64718 -13.27430 -12.75110 -12.58598 -12.52322 -12.25235 -11.80863 -11.56949 -11.37314 -11.13219 -10.94639 -10.76315 -10.62269 -10.55296 -10.39958 -10.27150 -10.19159 -10.05820 -9.90648 -9.78953 -9.38230 -8.90095 -8.68809 -7.65982 -7.11731 -6.18474 -4.15819 3.17991 3.25279 3.28511 4.29357 4.66600 5.05359 5.11219 5.17026 5.28569 5.30708 5.42041 5.60985 5.70407 5.79838 5.96085 6.02059 6.04525 6.10408 6.19225 6.23621 6.26618 6.29126 6.33231 6.33670 6.42657 6.45099 6.47515 6.54373 6.64457 6.71238 6.72913 6.80566 6.84332 7.12299 7.27163 7.38480 7.41571 7.92929 8.06886 8.17963 8.31840 8.60963 8.86103 9.44100 10.93521 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.012471 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.775665 B = 2244.699144 C = 3341.657910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.064 0.936 4 C -0.137 4.137 5 C 0.045 3.955 6 N -0.520 5.520 7 C 0.106 3.894 8 C -0.146 4.146 9 C -0.125 4.125 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.139 3.861 13 H 0.019 0.981 14 C -0.508 4.508 15 H 0.081 0.919 16 C 0.080 3.920 17 N -0.893 5.893 18 Si 0.864 3.136 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.084 3.916 23 N -0.697 5.697 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -4.151 -8.075 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 H 0.083 0.917 4 C -0.177 4.177 5 C -0.082 4.082 6 N -0.244 5.244 7 C -0.002 4.002 8 C -0.185 4.185 9 C -0.163 4.163 10 C -0.161 4.161 11 C -0.161 4.161 12 C 0.030 3.970 13 H 0.036 0.964 14 C -0.547 4.547 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.693 3.307 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.045 4.045 23 N -0.326 5.326 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.557 -4.083 -7.389 11.330 hybrid contribution 0.579 1.524 -1.392 2.143 sum -6.979 -2.559 -8.780 11.504 Atomic orbital electron populations 1.21798 0.95644 1.01242 1.00684 1.21121 0.94121 0.97889 0.88524 0.91742 1.21320 0.96390 1.01075 0.98916 1.21076 0.93487 0.98173 0.95489 1.61970 1.07101 1.47074 1.08214 1.22141 0.90320 0.91319 0.96408 1.23035 0.99224 0.99737 0.96532 1.22479 0.99157 0.96514 0.98134 1.22365 0.99001 0.97252 0.97442 1.22323 1.00597 0.98485 0.94675 1.20229 0.96545 0.90069 0.90149 0.96389 1.20976 0.99318 0.95669 1.38715 0.90131 1.24988 0.94502 0.98173 0.94643 1.69878 1.13747 1.24922 1.44504 0.87104 0.79670 0.83771 0.80170 1.20261 1.21462 1.19012 1.22545 0.85926 0.99202 0.96855 1.59474 1.32416 1.07851 1.32895 0.92618 0.93451 0.93068 0.91723 0.92623 0.95754 0.92051 0.87294 0.93038 0.90218 0.91800 0.93001 0.92702 0.92692 0.92413 0.91822 0.92576 0.91583 0.92856 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.44 37.16 0.35 -1.49 16 2 C 0.09 1.55 2.72 -68.47 -0.19 1.37 16 3 H 0.06 1.21 6.98 -51.93 -0.36 0.85 16 4 C -0.14 -2.12 4.97 -29.34 -0.15 -2.27 16 5 C 0.05 0.81 3.53 -6.42 -0.02 0.78 16 6 N -0.52 -10.27 4.32 -223.22 -0.96 -11.24 16 7 C 0.11 2.11 2.44 -66.60 -0.16 1.94 16 8 C -0.15 -2.94 4.99 -25.04 -0.12 -3.06 16 9 C -0.12 -2.07 6.91 -24.70 -0.17 -2.25 16 10 C -0.12 -1.82 6.58 -25.07 -0.16 -1.99 16 11 C -0.12 -2.01 5.76 -25.62 -0.15 -2.16 16 12 C 0.14 3.08 1.31 -69.79 -0.09 2.99 16 13 H 0.02 0.44 2.73 -51.93 -0.14 0.30 16 14 C -0.51 -13.00 5.77 -34.44 -0.20 -13.20 16 15 H 0.08 2.28 7.22 -52.49 -0.38 1.91 16 16 C 0.08 2.14 4.22 -17.82 -0.08 2.07 16 17 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 18 Si 0.86 21.01 26.34 -169.99 -4.48 16.53 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.28 6.11 56.52 0.35 -5.93 16 22 C 0.08 1.74 6.14 -2.62 -0.02 1.72 16 23 N -0.70 -12.28 6.18 -106.30 -0.66 -12.94 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.97 7.62 -51.93 -0.40 0.58 16 28 H 0.06 0.76 8.00 -51.93 -0.42 0.35 16 29 H 0.02 0.48 6.20 -51.93 -0.32 0.16 16 30 H 0.06 1.02 5.68 -51.93 -0.30 0.72 16 31 H 0.11 2.52 5.78 -51.93 -0.30 2.22 16 32 H 0.05 1.05 5.78 -51.93 -0.30 0.75 16 33 H 0.08 1.86 5.60 -51.92 -0.29 1.56 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.78 7.72 -51.93 -0.40 0.38 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.02 6.94 -51.93 -0.36 0.66 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.07 1.40 7.97 -51.93 -0.41 0.99 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.34 5.73 8.08 -39.29 -0.32 5.41 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -26.27 301.63 -9.20 -35.47 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.27 Total: 8.06 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.16 Total: -15.54 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.85 Total: -49.07 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.48 Total: 16.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.27 -9.20 -35.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221598236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.188 kcal (2) G-P(sol) polarization free energy of solvation -26.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds