Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.61041 * 2 1 4 4 C 1.54252 * 109.61037 * 239.48005 * 2 1 3 5 5 C 1.46134 * 111.90451 * 161.64000 * 4 2 1 6 6 N 1.48108 * 112.19383 * 60.86639 * 5 4 2 7 7 C 1.46901 * 110.99754 * 156.49017 * 6 5 4 8 8 C 1.54263 * 110.03285 * 53.38702 * 7 6 5 9 9 C 1.54961 * 104.16332 * 217.13420 * 8 7 6 10 10 C 1.54888 * 102.77422 * 37.88816 * 9 8 7 11 11 C 1.53871 * 110.03440 * 296.16961 * 7 6 5 12 12 C 1.44259 * 109.98080 * 279.71888 * 6 5 4 13 13 H 1.08993 * 108.87268 * 333.10779 * 12 6 5 14 14 C 1.50702 * 108.86454 * 214.68653 * 12 6 5 15 15 H 1.07993 * 120.00303 * 305.09436 * 14 12 6 16 16 C 1.37881 * 119.99536 * 125.09717 * 14 12 6 17 17 N 1.31510 * 119.99880 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 120.00032 * 0.02562 * 16 14 12 19 19 H 1.48494 * 109.47411 * 90.00151 * 18 16 14 20 20 H 1.48505 * 109.46819 * 210.00210 * 18 16 14 21 21 H 1.48502 * 109.47187 * 329.99775 * 18 16 14 22 22 C 1.53939 * 112.54291 * 93.90229 * 12 6 5 23 23 N 1.44263 * 109.60737 * 120.33509 * 2 1 3 24 24 H 1.09005 * 109.47010 * 299.66709 * 1 2 3 25 25 H 1.08994 * 109.47185 * 59.66487 * 1 2 3 26 26 H 1.09002 * 109.47294 * 179.66791 * 1 2 3 27 27 H 1.08997 * 108.99310 * 282.26008 * 4 2 1 28 28 H 1.08998 * 108.98949 * 41.09791 * 4 2 1 29 29 H 1.09001 * 108.93394 * 300.16706 * 5 4 2 30 30 H 1.08996 * 108.93617 * 181.56789 * 5 4 2 31 31 H 1.09002 * 110.01719 * 174.78202 * 7 6 5 32 32 H 1.08994 * 110.49131 * 335.78774 * 8 7 6 33 33 H 1.09009 * 110.48358 * 98.42846 * 8 7 6 34 34 H 1.09004 * 110.72195 * 279.58064 * 9 8 7 35 35 H 1.08999 * 110.92802 * 156.29939 * 9 8 7 36 36 H 1.09003 * 110.48879 * 203.40252 * 10 9 8 37 37 H 1.09007 * 110.48589 * 80.76727 * 10 9 8 38 38 H 1.09001 * 110.03750 * 238.57185 * 11 7 6 39 39 H 1.09001 * 110.03487 * 0.02562 * 11 7 6 40 40 H 0.96999 * 120.00061 * 179.97438 * 17 16 14 41 41 H 1.08998 * 108.82377 * 79.22847 * 22 12 6 42 42 H 1.09001 * 108.81588 * 197.52576 * 22 12 6 43 43 H 1.00899 * 110.99770 * 86.68541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0477 -0.7379 -1.2517 5 6 3.4429 -0.4115 -1.5390 6 7 4.3472 -0.7974 -0.4313 7 6 5.7205 -0.9902 -0.9159 8 6 6.1888 0.2602 -1.6884 9 6 7.0416 -0.3091 -2.8502 10 6 6.2649 -1.5881 -3.2503 11 6 5.7692 -2.1651 -1.9083 12 6 4.3020 0.1983 0.6116 13 1 4.0326 1.1582 0.1712 14 6 5.6703 0.3167 1.2319 15 1 6.1615 -0.5599 1.6277 16 6 6.2952 1.5442 1.2940 17 7 7.4895 1.6475 1.8348 18 14 5.4453 3.0605 0.6100 19 1 4.6340 3.6975 1.6781 20 1 6.4662 4.0229 0.1233 21 1 4.5602 2.6666 -0.5156 22 6 3.2841 -0.1471 1.7136 23 7 2.0141 -0.6864 1.1729 24 1 -0.3633 0.5087 0.8930 25 1 -0.3633 0.5190 -0.8869 26 1 -0.3634 -1.0277 -0.0060 27 1 1.9606 -1.8125 -1.0914 28 1 1.4351 -0.4563 -2.1082 29 1 3.5275 0.6622 -1.7071 30 1 3.7494 -0.9349 -2.4446 31 1 6.3888 -1.1826 -0.0765 32 1 5.3326 0.8108 -2.0781 33 1 6.7951 0.9000 -1.0471 34 1 8.0452 -0.5587 -2.5057 35 1 7.0841 0.3933 -3.6826 36 1 6.9269 -2.2962 -3.7488 37 1 5.4208 -1.3366 -3.8926 38 1 6.4617 -2.9273 -1.5510 39 1 4.7738 -2.5920 -2.0308 40 1 7.9292 2.5110 1.8782 41 1 3.7254 -0.8880 2.3802 42 1 3.0676 0.7542 2.2871 43 1 2.0841 -1.6793 1.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221598236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -12.394903 kcal Electronic energy + Delta-G solvation = -20926.235052 eV Core-core repulsion = 18198.083264 eV Total energy + Delta-G solvation = -2728.151787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13422 -38.40829 -35.81471 -34.48546 -33.44997 -30.26503 -29.72773 -29.11127 -27.17668 -25.44818 -23.99094 -22.48851 -21.29602 -20.90791 -19.92403 -18.69365 -17.56734 -16.82621 -16.36914 -16.20556 -15.78270 -15.57484 -15.04799 -14.85362 -14.44938 -14.05645 -13.99889 -13.61535 -13.31016 -13.06607 -12.96889 -12.79155 -12.45496 -12.26088 -12.08451 -12.04840 -11.89447 -11.88409 -11.73134 -11.59642 -11.36239 -11.24186 -11.08792 -10.78841 -10.74799 -9.17445 -8.76101 -8.32247 -6.29945 1.18954 1.23053 1.27470 2.23299 2.96398 3.28166 3.60448 3.81383 3.88620 3.93226 4.08795 4.30727 4.39180 4.44613 4.48343 4.62388 4.69762 4.72048 4.79232 4.88148 4.92031 4.93196 4.96485 5.01775 5.03660 5.07232 5.11685 5.15319 5.16481 5.25876 5.33946 5.37691 5.47451 5.48825 5.55871 5.63026 5.73447 6.09396 6.40849 6.51799 6.72353 6.77038 6.85869 7.32206 8.83546 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.012471 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.775665 B = 2244.699144 C = 3341.657910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.089 3.911 3 H 0.037 0.963 4 C -0.133 4.133 5 C 0.049 3.951 6 N -0.519 5.519 7 C 0.104 3.896 8 C -0.146 4.146 9 C -0.122 4.122 10 C -0.111 4.111 11 C -0.114 4.114 12 C 0.149 3.851 13 H 0.005 0.995 14 C -0.490 4.490 15 H 0.042 0.958 16 C 0.037 3.963 17 N -0.938 5.938 18 Si 0.913 3.087 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.255 1.255 22 C 0.091 3.909 23 N -0.688 5.688 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.004 0.996 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.263 0.737 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -5.182 -10.710 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 H 0.056 0.944 4 C -0.172 4.172 5 C -0.079 4.079 6 N -0.242 5.242 7 C -0.004 4.004 8 C -0.185 4.185 9 C -0.160 4.160 10 C -0.149 4.149 11 C -0.152 4.152 12 C 0.039 3.961 13 H 0.023 0.977 14 C -0.530 4.530 15 H 0.060 0.940 16 C -0.161 4.161 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.200 1.200 20 H -0.216 1.216 21 H -0.180 1.180 22 C -0.039 4.039 23 N -0.318 5.318 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.932 -5.130 -10.040 15.025 hybrid contribution 1.330 1.781 -0.549 2.290 sum -8.602 -3.349 -10.589 14.047 Atomic orbital electron populations 1.21707 0.92862 1.02413 1.01434 1.21257 0.96194 0.96319 0.88426 0.94432 1.21280 0.94961 1.01579 0.99402 1.21166 0.94399 0.97107 0.95189 1.61978 1.07637 1.45769 1.08797 1.22043 0.89473 0.93038 0.95865 1.22936 0.99049 0.99195 0.97358 1.22463 0.98485 0.97891 0.97127 1.22322 0.99655 0.96313 0.96564 1.22232 1.01588 0.96868 0.94531 1.20094 0.94641 0.90324 0.91027 0.97735 1.21045 1.00598 0.94002 1.37335 0.94010 1.25513 0.94855 1.00565 0.95184 1.69997 1.15463 1.25409 1.47000 0.86308 0.78804 0.80933 0.79903 1.20025 1.21586 1.18011 1.22263 0.87089 0.98416 0.96106 1.59477 1.29944 1.08303 1.34032 0.93189 0.91479 0.91637 0.90494 0.89714 0.97798 0.90139 0.91818 0.93352 0.94373 0.92355 0.91267 0.90125 0.91068 0.92025 0.90613 0.92754 0.92781 0.94172 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.44 71.98 0.68 -2.29 16 2 C 0.09 2.70 2.72 45.83 0.12 2.82 16 3 H 0.04 1.35 6.98 -2.39 -0.02 1.34 16 4 C -0.13 -3.61 4.97 28.91 0.14 -3.46 16 5 C 0.05 1.60 3.53 83.96 0.30 1.90 16 6 N -0.52 -20.22 4.32 -860.13 -3.71 -23.93 16 7 C 0.10 4.15 2.44 45.64 0.11 4.27 16 8 C -0.15 -5.89 4.99 31.69 0.16 -5.73 16 9 C -0.12 -3.84 6.91 31.91 0.22 -3.62 16 10 C -0.11 -2.88 6.58 31.67 0.21 -2.67 16 11 C -0.11 -3.48 5.76 31.32 0.18 -3.30 16 12 C 0.15 6.73 1.31 44.98 0.06 6.78 16 13 H 0.01 0.24 2.73 -2.39 -0.01 0.24 16 14 C -0.49 -26.43 5.77 25.60 0.15 -26.28 16 15 H 0.04 2.54 7.22 -2.91 -0.02 2.52 16 16 C 0.04 2.10 4.22 84.66 0.36 2.46 16 17 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 18 Si 0.91 44.66 26.34 68.60 1.81 46.46 16 19 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.26 -11.97 6.11 99.48 0.61 -11.36 16 22 C 0.09 3.82 6.14 86.37 0.53 4.35 16 23 N -0.69 -23.22 6.18 -490.23 -3.03 -26.25 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.96 7.62 -2.39 -0.02 1.94 16 28 H 0.08 1.88 8.00 -2.39 -0.02 1.86 16 29 H 0.00 0.14 6.20 -2.39 -0.01 0.13 16 30 H 0.08 2.36 5.68 -2.39 -0.01 2.34 16 31 H 0.06 3.11 5.78 -2.39 -0.01 3.10 16 32 H 0.05 1.95 5.78 -2.39 -0.01 1.94 16 33 H 0.04 1.84 5.60 -2.38 -0.01 1.82 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.66 7.72 -2.38 -0.02 1.64 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 2.15 6.94 -2.39 -0.02 2.13 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.05 2.36 7.97 -2.39 -0.02 2.34 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.35 10.94 8.08 -89.69 -0.72 10.21 16 Total: -1.00 -60.06 301.63 -1.25 -61.31 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.17 Total: 23.66 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.22 Total: -24.78 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -6.44 Total: -106.66 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.81 Total: 46.46 kcal Total: -60.06 -1.25 -61.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221598236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.918 kcal (2) G-P(sol) polarization free energy of solvation -60.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds