Wall clock time and date at job start Mon Mar 30 2020 04:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46883 * 2 1 4 4 C 1.50693 * 109.47191 * 239.99694 * 2 1 3 5 5 H 1.07999 * 120.00101 * 244.99995 * 4 2 1 6 6 C 1.37880 * 119.99899 * 65.00468 * 4 2 1 7 7 N 1.31517 * 119.99768 * 196.91807 * 6 4 2 8 8 Si 1.86797 * 120.00037 * 16.91985 * 6 4 2 9 9 H 1.48499 * 109.47474 * 95.69516 * 8 6 4 10 10 H 1.48506 * 109.46807 * 215.69669 * 8 6 4 11 11 H 1.48503 * 109.46893 * 335.69350 * 8 6 4 12 12 N 1.46901 * 109.46869 * 119.99692 * 2 1 3 13 13 C 1.46833 * 111.00371 * 299.29035 * 12 2 1 14 14 C 1.53149 * 109.76674 * 176.76437 * 13 12 2 15 15 H 1.09000 * 109.64881 * 297.12966 * 14 13 12 16 16 C 1.53161 * 108.58949 * 177.49710 * 14 13 12 17 17 C 1.53010 * 109.61824 * 181.42167 * 16 14 13 18 18 C 1.53178 * 108.87592 * 57.93813 * 17 16 14 19 19 C 1.52908 * 109.00812 * 301.72365 * 18 17 16 20 20 N 1.46830 * 109.76013 * 57.47119 * 14 13 12 21 21 C 1.47120 * 111.17910 * 302.52117 * 20 14 13 22 22 C 1.47028 * 111.00172 * 175.94596 * 12 2 1 23 23 H 1.09005 * 109.53844 * 303.61920 * 22 12 2 24 24 C 1.53003 * 109.53946 * 63.87054 * 22 12 2 25 25 H 1.08996 * 109.47481 * 302.02879 * 1 2 3 26 26 H 1.08994 * 109.46799 * 62.02656 * 1 2 3 27 27 H 1.09003 * 109.47098 * 182.02678 * 1 2 3 28 28 H 0.97002 * 119.99524 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.42130 * 56.67292 * 13 12 2 30 30 H 1.09007 * 109.42646 * 296.86064 * 13 12 2 31 31 H 1.09000 * 109.44901 * 61.37538 * 16 14 13 32 32 H 1.09002 * 109.45138 * 301.46614 * 16 14 13 33 33 H 1.08994 * 109.57224 * 298.11708 * 17 16 14 34 34 H 1.09006 * 109.67055 * 177.81345 * 17 16 14 35 35 H 1.08999 * 109.54729 * 181.86327 * 18 17 16 36 36 H 1.09000 * 109.62426 * 61.63030 * 18 17 16 37 37 H 1.08999 * 109.40635 * 299.47261 * 19 18 17 38 38 H 1.08996 * 109.33583 * 179.67543 * 19 18 17 39 39 H 1.08994 * 109.42385 * 298.31406 * 21 20 14 40 40 H 1.09000 * 109.37665 * 178.46261 * 21 20 14 41 41 H 1.09004 * 109.46909 * 179.61900 * 24 22 12 42 42 H 1.09002 * 109.46836 * 299.61487 * 24 22 12 43 43 H 1.08995 * 109.47386 * 59.61561 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5850 -1.6332 -1.1333 6 6 1.7864 -0.1823 -2.4800 7 7 1.9176 -0.9360 -3.5498 8 14 1.2671 1.6036 -2.6536 9 1 2.4599 2.4404 -2.9406 10 1 0.2940 1.7300 -3.7683 11 1 0.6345 2.0601 -1.3900 12 7 2.0196 -0.6924 1.1995 13 6 1.5628 -0.0169 2.4205 14 6 2.0203 -0.8056 3.6510 15 1 1.5603 -1.7937 3.6448 16 6 1.5847 -0.0460 4.9076 17 6 2.0616 -0.7966 6.1527 18 6 3.5849 -0.9440 6.0894 19 6 3.9602 -1.6914 4.8093 20 7 3.4819 -0.9450 3.6359 21 6 3.9404 -1.6037 2.4029 22 6 3.4861 -0.7967 1.1860 23 1 3.8075 -1.3000 0.2741 24 6 4.0993 0.6039 1.2429 25 1 -0.3634 0.5450 0.8712 26 1 -0.3633 0.4820 -0.9076 27 1 -0.3633 -1.0271 0.0363 28 1 1.7442 -0.5645 -4.4290 29 1 0.4746 0.0461 2.4144 30 1 1.9827 0.9883 2.4575 31 1 0.4977 0.0328 4.9255 32 1 2.0204 0.9531 4.8971 33 1 1.6002 -1.7836 6.1832 34 1 1.7858 -0.2369 7.0466 35 1 3.9332 -1.5066 6.9556 36 1 4.0483 0.0426 6.0849 37 1 3.5026 -2.6806 4.8201 38 1 5.0440 -1.7943 4.7559 39 1 3.5190 -2.6075 2.3500 40 1 5.0285 -1.6674 2.4101 41 1 5.1865 0.5250 1.2397 42 1 3.7742 1.1783 0.3754 43 1 3.7741 1.1062 2.1539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227407063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:27 Heat of formation + Delta-G solvation = 8.268962 kcal Electronic energy + Delta-G solvation = -20424.105944 eV Core-core repulsion = 17696.850209 eV Total energy + Delta-G solvation = -2727.255735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86444 -37.02025 -33.92334 -32.62291 -31.47823 -30.78143 -28.42371 -26.29386 -25.46748 -24.02263 -23.02409 -22.03331 -20.25395 -19.49807 -18.05155 -16.69256 -16.00627 -15.29204 -14.71310 -14.50905 -14.22144 -14.08701 -14.03119 -13.20888 -13.02814 -12.90950 -12.59952 -12.34401 -12.12347 -11.79626 -11.59675 -11.27344 -11.06428 -10.97208 -10.80009 -10.69812 -10.63739 -10.45019 -10.40525 -10.20606 -10.05292 -9.59367 -9.44210 -8.99064 -8.42599 -8.02536 -7.22312 -6.08488 -4.00684 3.27837 3.37837 3.40926 4.11968 4.43337 4.70144 4.86661 4.90684 4.99668 5.22352 5.31990 5.44279 5.49413 5.61186 5.66025 5.68005 5.79958 5.87259 5.92819 5.94276 6.04165 6.08906 6.12978 6.19264 6.22050 6.27334 6.33828 6.42973 6.52741 6.57531 6.65050 6.67992 6.82587 7.03070 7.04738 7.33622 7.35547 7.45505 7.72784 8.02817 8.16127 8.69379 9.02573 9.58367 11.04323 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.006358 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.031194 B = 4403.012007 C = 4693.725320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.186 3.814 3 H -0.002 1.002 4 C -0.509 4.509 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.860 3.140 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.257 1.257 12 N -0.519 5.519 13 C 0.052 3.948 14 C 0.092 3.908 15 H 0.044 0.956 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.115 4.115 19 C 0.053 3.947 20 N -0.527 5.527 21 C 0.062 3.938 22 C 0.090 3.910 23 H 0.101 0.899 24 C -0.169 4.169 25 H 0.021 0.979 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.262 0.738 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 1.337 17.028 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.687 3.313 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.182 1.182 12 N -0.243 5.243 13 C -0.077 4.077 14 C -0.017 4.017 15 H 0.062 0.938 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.075 4.075 20 N -0.253 5.253 21 C -0.066 4.066 22 C -0.019 4.019 23 H 0.119 0.881 24 C -0.228 4.228 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.875 1.317 16.814 16.969 hybrid contribution -0.300 0.960 -0.357 1.067 sum 1.575 2.277 16.456 16.688 Atomic orbital electron populations 1.22144 0.98320 1.00666 0.98390 1.19610 0.91613 0.92454 0.88487 0.98434 1.20879 1.35950 1.09710 0.88095 0.90268 1.24850 0.94780 0.97100 0.95835 1.69990 1.49316 1.35099 0.98448 0.87208 0.78686 0.87165 0.78252 1.20819 1.21335 1.18166 1.62405 1.08868 1.51439 1.01555 1.22221 0.99708 0.95785 0.89940 1.21636 0.87370 0.98145 0.94571 0.93787 1.21615 1.00218 0.99674 0.93531 1.21557 0.95967 1.00345 0.97834 1.21562 0.96068 1.01149 0.96525 1.22070 0.99870 0.94826 0.90718 1.62335 1.11174 1.49910 1.01862 1.22243 0.99110 0.96055 0.89203 1.21647 0.88077 0.95041 0.97149 0.88081 1.22231 0.99966 0.99065 1.01549 0.95958 0.93571 0.92684 0.92764 0.90947 0.94709 0.91729 0.91388 0.92406 0.92135 0.92043 0.91285 0.95302 0.91174 0.94504 0.91146 0.93553 0.92558 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.28 37.16 0.31 -2.74 16 2 C 0.19 4.37 1.18 -68.87 -0.08 4.29 16 3 H 0.00 -0.04 5.12 -51.93 -0.27 -0.31 16 4 C -0.51 -13.96 8.18 -34.44 -0.28 -14.24 16 5 H 0.08 2.37 6.86 -52.49 -0.36 2.01 16 6 C 0.08 2.17 5.33 -17.82 -0.09 2.08 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.86 21.21 25.83 -169.99 -4.39 16.82 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.05 5.57 56.52 0.32 -5.74 16 12 N -0.52 -10.76 4.54 -220.01 -1.00 -11.75 16 13 C 0.05 0.92 4.15 -3.78 -0.02 0.91 16 14 C 0.09 1.38 2.35 -67.59 -0.16 1.22 16 15 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.11 -1.38 5.29 -26.64 -0.14 -1.52 16 17 C -0.12 -1.25 6.01 -26.63 -0.16 -1.41 16 18 C -0.12 -1.20 6.10 -26.69 -0.16 -1.36 16 19 C 0.05 0.65 5.37 -3.78 -0.02 0.63 16 20 N -0.53 -7.80 4.03 -226.31 -0.91 -8.71 16 21 C 0.06 1.00 4.97 -3.74 -0.02 0.99 16 22 C 0.09 1.74 2.68 -67.68 -0.18 1.56 16 23 H 0.10 2.22 6.21 -51.93 -0.32 1.89 16 24 C -0.17 -3.12 8.35 37.16 0.31 -2.81 16 25 H 0.02 0.43 6.45 -51.93 -0.34 0.09 16 26 H 0.05 1.05 5.18 -51.93 -0.27 0.79 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.26 6.19 -51.93 -0.32 0.93 16 30 H 0.03 0.63 6.27 -51.93 -0.33 0.31 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.16 6.61 -51.93 -0.34 0.81 16 43 H 0.06 1.03 5.89 -51.93 -0.31 0.73 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -28.85 305.22 -9.19 -38.04 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.56 Total: -0.48 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.70 Total: -12.42 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.14 Total: -46.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.39 Total: 16.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.85 -9.19 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227407063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.308 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds