Wall clock time and date at job start Mon Mar 30 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46883 * 2 1 4 4 C 1.50693 * 109.47191 * 239.99694 * 2 1 3 5 5 H 1.07999 * 120.00101 * 244.99995 * 4 2 1 6 6 C 1.37880 * 119.99899 * 65.00468 * 4 2 1 7 7 N 1.31517 * 119.99768 * 196.91807 * 6 4 2 8 8 Si 1.86797 * 120.00037 * 16.91985 * 6 4 2 9 9 H 1.48499 * 109.47474 * 95.69516 * 8 6 4 10 10 H 1.48506 * 109.46807 * 215.69669 * 8 6 4 11 11 H 1.48503 * 109.46893 * 335.69350 * 8 6 4 12 12 N 1.46901 * 109.46869 * 119.99692 * 2 1 3 13 13 C 1.46833 * 111.00371 * 299.29035 * 12 2 1 14 14 C 1.53149 * 109.76674 * 176.76437 * 13 12 2 15 15 H 1.09000 * 109.64881 * 297.12966 * 14 13 12 16 16 C 1.53161 * 108.58949 * 177.49710 * 14 13 12 17 17 C 1.53010 * 109.61824 * 181.42167 * 16 14 13 18 18 C 1.53178 * 108.87592 * 57.93813 * 17 16 14 19 19 C 1.52908 * 109.00812 * 301.72365 * 18 17 16 20 20 N 1.46830 * 109.76013 * 57.47119 * 14 13 12 21 21 C 1.47120 * 111.17910 * 302.52117 * 20 14 13 22 22 C 1.47028 * 111.00172 * 175.94596 * 12 2 1 23 23 H 1.09005 * 109.53844 * 303.61920 * 22 12 2 24 24 C 1.53003 * 109.53946 * 63.87054 * 22 12 2 25 25 H 1.08996 * 109.47481 * 302.02879 * 1 2 3 26 26 H 1.08994 * 109.46799 * 62.02656 * 1 2 3 27 27 H 1.09003 * 109.47098 * 182.02678 * 1 2 3 28 28 H 0.97002 * 119.99524 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.42130 * 56.67292 * 13 12 2 30 30 H 1.09007 * 109.42646 * 296.86064 * 13 12 2 31 31 H 1.09000 * 109.44901 * 61.37538 * 16 14 13 32 32 H 1.09002 * 109.45138 * 301.46614 * 16 14 13 33 33 H 1.08994 * 109.57224 * 298.11708 * 17 16 14 34 34 H 1.09006 * 109.67055 * 177.81345 * 17 16 14 35 35 H 1.08999 * 109.54729 * 181.86327 * 18 17 16 36 36 H 1.09000 * 109.62426 * 61.63030 * 18 17 16 37 37 H 1.08999 * 109.40635 * 299.47261 * 19 18 17 38 38 H 1.08996 * 109.33583 * 179.67543 * 19 18 17 39 39 H 1.08994 * 109.42385 * 298.31406 * 21 20 14 40 40 H 1.09000 * 109.37665 * 178.46261 * 21 20 14 41 41 H 1.09004 * 109.46909 * 179.61900 * 24 22 12 42 42 H 1.09002 * 109.46836 * 299.61487 * 24 22 12 43 43 H 1.08995 * 109.47386 * 59.61561 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5850 -1.6332 -1.1333 6 6 1.7864 -0.1823 -2.4800 7 7 1.9176 -0.9360 -3.5498 8 14 1.2671 1.6036 -2.6536 9 1 2.4599 2.4404 -2.9406 10 1 0.2940 1.7300 -3.7683 11 1 0.6345 2.0601 -1.3900 12 7 2.0196 -0.6924 1.1995 13 6 1.5628 -0.0169 2.4205 14 6 2.0203 -0.8056 3.6510 15 1 1.5603 -1.7937 3.6448 16 6 1.5847 -0.0460 4.9076 17 6 2.0616 -0.7966 6.1527 18 6 3.5849 -0.9440 6.0894 19 6 3.9602 -1.6914 4.8093 20 7 3.4819 -0.9450 3.6359 21 6 3.9404 -1.6037 2.4029 22 6 3.4861 -0.7967 1.1860 23 1 3.8075 -1.3000 0.2741 24 6 4.0993 0.6039 1.2429 25 1 -0.3634 0.5450 0.8712 26 1 -0.3633 0.4820 -0.9076 27 1 -0.3633 -1.0271 0.0363 28 1 1.7442 -0.5645 -4.4290 29 1 0.4746 0.0461 2.4144 30 1 1.9827 0.9883 2.4575 31 1 0.4977 0.0328 4.9255 32 1 2.0204 0.9531 4.8971 33 1 1.6002 -1.7836 6.1832 34 1 1.7858 -0.2369 7.0466 35 1 3.9332 -1.5066 6.9556 36 1 4.0483 0.0426 6.0849 37 1 3.5026 -2.6806 4.8201 38 1 5.0440 -1.7943 4.7559 39 1 3.5190 -2.6075 2.3500 40 1 5.0285 -1.6674 2.4101 41 1 5.1865 0.5250 1.2397 42 1 3.7742 1.1783 0.3754 43 1 3.7741 1.1062 2.1539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227407063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:26 Heat of formation + Delta-G solvation = -11.399241 kcal Electronic energy + Delta-G solvation = -20424.958822 eV Core-core repulsion = 17696.850209 eV Total energy + Delta-G solvation = -2728.108612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17860 -38.39557 -35.44689 -34.31818 -32.84757 -32.28982 -29.89652 -27.69649 -27.31349 -25.55073 -24.08450 -23.31702 -21.88412 -20.59366 -19.60590 -18.72047 -17.48933 -16.49327 -16.33530 -15.99358 -15.67891 -15.37372 -15.25363 -14.73561 -14.36381 -14.28203 -14.17698 -13.83717 -13.64259 -13.31746 -12.87935 -12.81725 -12.60998 -12.44569 -12.24905 -12.22502 -12.05341 -11.97033 -11.71406 -11.53001 -11.47680 -11.23693 -10.95699 -10.79537 -10.56781 -9.24468 -8.87244 -8.28893 -6.24813 1.30741 1.35616 1.44675 2.34685 2.96840 3.03912 3.22954 3.85666 3.91568 4.00920 4.13258 4.29930 4.36610 4.39349 4.46657 4.49132 4.59991 4.65685 4.71643 4.74373 4.74678 4.79682 4.86953 4.88941 4.96383 5.01418 5.04610 5.10225 5.12455 5.15994 5.26746 5.32844 5.37334 5.45893 5.51982 5.55271 5.77030 6.03934 6.16831 6.24827 6.47073 6.76918 6.80268 7.37897 8.87782 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.006358 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.031194 B = 4403.012007 C = 4693.725320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H -0.006 1.006 4 C -0.506 4.506 5 H 0.037 0.963 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.922 3.078 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.236 1.236 12 N -0.533 5.533 13 C 0.053 3.947 14 C 0.095 3.905 15 H 0.030 0.970 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.110 4.110 19 C 0.051 3.949 20 N -0.529 5.529 21 C 0.072 3.928 22 C 0.087 3.913 23 H 0.062 0.938 24 C -0.157 4.157 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 2.865 20.003 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.082 3.918 3 H 0.011 0.989 4 C -0.544 4.544 5 H 0.055 0.945 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.746 3.254 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.159 1.159 12 N -0.257 5.257 13 C -0.075 4.075 14 C -0.014 4.014 15 H 0.048 0.952 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.077 4.077 20 N -0.254 5.254 21 C -0.057 4.057 22 C -0.022 4.022 23 H 0.080 0.920 24 C -0.215 4.215 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.586 2.846 19.828 20.093 hybrid contribution -0.154 0.371 -1.256 1.319 sum 1.432 3.217 18.571 18.902 Atomic orbital electron populations 1.22048 0.97004 1.00587 0.99500 1.19435 0.92498 0.91672 0.88163 0.98885 1.21074 1.34863 1.08343 0.90104 0.94470 1.25629 0.95226 1.01293 0.95403 1.70120 1.51555 1.37219 0.99107 0.86208 0.78481 0.81616 0.79102 1.20584 1.21007 1.15853 1.62337 1.09779 1.51764 1.01861 1.22306 0.99953 0.95825 0.89390 1.21614 0.87543 0.97437 0.94817 0.95224 1.21590 1.00895 0.99297 0.92732 1.21557 0.95908 1.00381 0.97568 1.21556 0.96063 1.01120 0.96062 1.22198 1.00443 0.94667 0.90396 1.62368 1.10955 1.50116 1.01975 1.22075 1.00001 0.94701 0.88875 1.21571 0.87600 0.95829 0.97169 0.91958 1.22096 1.00901 0.97858 1.00677 0.92724 0.94292 0.93609 0.92660 0.90507 0.94835 0.90738 0.91431 0.92408 0.90075 0.89838 0.91355 0.95626 0.90140 0.95860 0.89382 0.91911 0.95150 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.28 71.98 0.60 -5.19 16 2 C 0.19 8.98 1.18 44.17 0.05 9.03 16 3 H -0.01 -0.30 5.12 -2.39 -0.01 -0.31 16 4 C -0.51 -28.82 8.18 25.60 0.21 -28.61 16 5 H 0.04 2.38 6.86 -2.91 -0.02 2.36 16 6 C 0.02 1.31 5.33 84.65 0.45 1.76 16 7 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 8 Si 0.92 44.05 25.83 68.60 1.77 45.82 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.24 -10.33 5.57 99.48 0.55 -9.78 16 12 N -0.53 -22.21 4.54 -849.96 -3.86 -26.06 16 13 C 0.05 1.81 4.15 86.37 0.36 2.16 16 14 C 0.09 2.69 2.35 45.03 0.11 2.79 16 15 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 16 C -0.11 -2.29 5.29 30.65 0.16 -2.13 16 17 C -0.12 -2.00 6.01 30.66 0.18 -1.82 16 18 C -0.11 -1.88 6.10 30.62 0.19 -1.70 16 19 C 0.05 1.10 5.37 86.24 0.46 1.56 16 20 N -0.53 -14.60 4.03 -869.90 -3.51 -18.11 16 21 C 0.07 2.29 4.97 86.23 0.43 2.72 16 22 C 0.09 3.43 2.68 44.87 0.12 3.55 16 23 H 0.06 2.91 6.21 -2.38 -0.01 2.89 16 24 C -0.16 -5.69 8.35 71.98 0.60 -5.09 16 25 H 0.05 1.99 6.45 -2.39 -0.02 1.98 16 26 H 0.04 1.72 5.18 -2.39 -0.01 1.70 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.08 2.49 6.19 -2.39 -0.01 2.48 16 30 H 0.03 1.15 6.27 -2.38 -0.01 1.14 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.03 1.23 6.61 -2.39 -0.02 1.22 16 43 H 0.07 2.31 5.89 -2.39 -0.01 2.30 16 Total: -1.00 -64.07 305.22 -0.56 -64.63 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.81 Total: 13.11 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.92 Total: -20.95 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -7.06 Total: -102.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.77 Total: 45.82 kcal Total: -64.07 -0.56 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227407063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.235 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds