Wall clock time and date at job start Mon Mar 30 2020 03:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00380 * 2 1 4 4 N 1.46902 * 109.47081 * 94.99855 * 3 2 1 5 5 C 1.46900 * 111.00017 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47116 * 85.00335 * 5 4 3 7 7 C 1.53007 * 109.47020 * 205.00273 * 5 4 3 8 8 C 1.50704 * 119.99607 * 180.02562 * 2 1 3 9 9 N 1.46904 * 109.46987 * 95.00039 * 8 2 1 10 10 C 1.46902 * 110.99887 * 190.00090 * 9 8 2 11 11 C 1.50694 * 109.47422 * 162.80844 * 10 9 8 12 12 H 1.08009 * 119.99628 * 4.65586 * 11 10 9 13 13 C 1.37872 * 120.00452 * 184.65358 * 11 10 9 14 14 N 1.31514 * 119.99724 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00382 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46876 * 59.99893 * 15 13 11 17 17 H 1.48493 * 109.47341 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46918 * 300.00092 * 15 13 11 19 19 C 1.46898 * 110.99995 * 66.04975 * 9 8 2 20 20 C 1.52996 * 117.50066 * 127.53609 * 19 9 8 21 21 C 1.52994 * 117.50341 * 58.90670 * 19 9 8 22 22 H 1.07990 * 120.00300 * 179.97438 * 1 2 3 23 23 H 1.08003 * 119.99489 * 359.72642 * 1 2 3 24 24 H 1.08998 * 109.47185 * 214.99575 * 3 2 1 25 25 H 1.08996 * 109.47076 * 334.99950 * 3 2 1 26 26 H 1.00897 * 111.00328 * 303.95681 * 4 3 2 27 27 H 1.09006 * 109.47140 * 324.99955 * 5 4 3 28 28 H 1.08995 * 109.47369 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.46955 * 299.99750 * 6 5 4 30 30 H 1.08999 * 109.47206 * 60.00120 * 6 5 4 31 31 H 1.09003 * 109.47138 * 60.00117 * 7 5 4 32 32 H 1.08995 * 109.46837 * 180.02562 * 7 5 4 33 33 H 1.08999 * 109.46538 * 299.99924 * 7 5 4 34 34 H 1.09004 * 109.46834 * 214.99928 * 8 2 1 35 35 H 1.08998 * 109.46918 * 335.00318 * 8 2 1 36 36 H 1.09007 * 109.46818 * 282.80966 * 10 9 8 37 37 H 1.08999 * 109.46986 * 42.80649 * 10 9 8 38 38 H 0.97000 * 119.99739 * 179.97438 * 14 13 11 39 39 H 1.09005 * 115.54868 * 273.24079 * 19 9 8 40 40 H 1.08994 * 117.50241 * 359.97438 * 20 19 9 41 41 H 1.09001 * 117.50103 * 145.02494 * 20 19 9 42 42 H 1.08998 * 117.50233 * 214.98303 * 21 19 9 43 43 H 1.09001 * 117.49429 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.4129 1.6687 1.3797 5 6 3.1507 2.9384 1.4187 6 6 2.1597 4.1039 1.4322 7 6 4.0138 2.9882 2.6812 8 6 2.0634 -1.3052 -0.0006 9 7 2.4128 -1.6683 -1.3805 10 6 2.9351 -3.0396 -1.4478 11 6 2.8849 -3.5269 -2.8729 12 1 2.5742 -2.8578 -3.6618 13 6 3.2356 -4.8268 -3.1698 14 7 3.6134 -5.6417 -2.2092 15 14 3.1726 -5.4311 -4.9363 16 1 4.0875 -4.6129 -5.7722 17 1 3.5938 -6.8541 -4.9880 18 1 1.7859 -5.3067 -5.4529 19 6 3.3709 -0.7115 -1.9501 20 6 4.6510 -1.2769 -2.5686 21 6 4.7095 -0.5384 -1.2298 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5399 0.9354 0.0045 24 1 2.9743 1.1987 -0.5894 25 1 1.4387 2.0854 -0.4343 26 1 1.5901 1.7102 1.9622 27 1 3.7895 3.0146 0.5388 28 1 2.7071 5.0460 1.4606 29 1 1.5449 4.0684 0.5327 30 1 1.5210 4.0277 2.3121 31 1 4.7198 2.1578 2.6717 32 1 4.5608 3.9304 2.7104 33 1 3.3750 2.9119 3.5611 34 1 2.9742 -1.1992 0.5889 35 1 1.4384 -2.0856 0.4333 36 1 3.9665 -3.0533 -1.0953 37 1 2.3277 -3.6910 -0.8195 38 1 3.8598 -6.5564 -2.4181 39 1 2.9330 0.1707 -2.4172 40 1 4.7825 -2.3587 -2.5524 41 1 5.0556 -0.7667 -3.4427 42 1 5.1525 0.4575 -1.2233 43 1 4.8791 -1.1342 -0.3329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231609659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:05 Heat of formation + Delta-G solvation = 30.357267 kcal Electronic energy + Delta-G solvation = -19281.201060 eV Core-core repulsion = 16554.903146 eV Total energy + Delta-G solvation = -2726.297914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22480 -38.42637 -35.96463 -34.99246 -33.41028 -31.19755 -29.29386 -27.95595 -26.09816 -25.79442 -24.53298 -23.00809 -21.70115 -20.79545 -19.23139 -18.30327 -17.54458 -16.71329 -16.65338 -16.21053 -15.80495 -15.24112 -15.19816 -14.93112 -14.32292 -14.18003 -14.02622 -13.47594 -13.27913 -13.11082 -12.96319 -12.88377 -12.70749 -12.61704 -12.33895 -12.13814 -11.97962 -11.86529 -11.71342 -11.55786 -11.32446 -11.24992 -10.84043 -10.57699 -10.07629 -9.23282 -8.89211 -8.14591 -6.21882 1.33690 1.42814 1.45251 1.53058 2.43661 3.06271 3.16733 3.32568 3.55231 3.94172 3.97859 4.09015 4.16718 4.18297 4.24074 4.28721 4.45748 4.56728 4.70627 4.76568 4.80069 4.83368 4.86791 4.96701 5.00186 5.06754 5.08293 5.09842 5.11907 5.23217 5.29416 5.32372 5.44775 5.61042 5.68138 5.72861 6.01765 6.10802 6.21297 6.44842 6.57669 6.65712 6.91252 7.44773 8.95499 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.004764 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.763559 B = 5875.486486 C = 6137.771299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C 0.100 3.900 4 N -0.688 5.688 5 C 0.076 3.924 6 C -0.175 4.175 7 C -0.135 4.135 8 C 0.097 3.903 9 N -0.510 5.510 10 C 0.206 3.794 11 C -0.499 4.499 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.038 3.962 20 C -0.190 4.190 21 C -0.197 4.197 22 H 0.090 0.910 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.343 0.657 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.029 0.971 35 H 0.053 0.947 36 H -0.027 1.027 37 H -0.005 1.005 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 18.716 6.196 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.319 5.319 5 C -0.033 4.033 6 C -0.234 4.234 7 C -0.193 4.193 8 C -0.030 4.030 9 N -0.232 5.232 10 C 0.080 3.920 11 C -0.537 4.537 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.578 5.578 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.071 4.071 20 C -0.227 4.227 21 C -0.236 4.236 22 H 0.108 0.892 23 H 0.135 0.865 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.162 0.838 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.072 0.928 36 H -0.010 1.010 37 H 0.014 0.986 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.800 18.157 5.962 19.195 hybrid contribution 0.083 -0.508 -0.374 0.637 sum -1.717 17.648 5.588 18.591 Atomic orbital electron populations 1.23790 0.94869 1.02210 1.00060 1.21423 0.95079 0.94277 1.00145 1.20993 0.99073 0.92341 0.90461 1.60559 1.28917 1.32796 1.09627 1.21601 0.95329 0.87194 0.99205 1.22438 0.99800 0.99371 1.01819 1.21731 0.99281 1.01537 0.96777 1.20985 0.97893 0.94838 0.89252 1.62187 1.40909 1.02349 1.17772 1.19467 0.91663 0.84456 0.96457 1.21272 1.42921 0.96106 0.93418 0.92207 1.25815 0.95333 0.96902 1.01505 1.70083 1.47063 1.06576 1.34088 0.85527 0.78784 0.76997 0.79878 1.19176 1.21159 1.19627 1.22596 0.84902 0.97375 1.02212 1.23414 1.01369 1.01361 0.96543 1.23207 1.03408 1.01729 0.95242 0.89172 0.86540 0.90578 0.93956 0.83841 0.91228 0.91136 0.93127 0.91998 0.93505 0.91239 0.92582 0.95270 0.92811 1.00979 0.98639 0.92901 0.86019 0.89184 0.87919 0.87036 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 13.88 67.78 0.94 -3.57 16 2 C -0.11 -3.21 4.75 -16.49 -0.08 -3.29 16 3 C 0.10 2.46 5.44 85.56 0.47 2.93 16 4 N -0.69 -15.18 6.24 -495.57 -3.09 -18.27 16 5 C 0.08 1.38 3.20 44.92 0.14 1.52 16 6 C -0.18 -2.51 9.16 71.98 0.66 -1.85 16 7 C -0.14 -2.28 9.52 71.98 0.69 -1.60 16 8 C 0.10 3.72 5.04 85.56 0.43 4.15 16 9 N -0.51 -22.45 4.66 -880.06 -4.10 -26.55 16 10 C 0.21 11.08 4.27 85.55 0.37 11.44 16 11 C -0.50 -28.19 6.85 25.60 0.18 -28.02 16 12 H 0.06 3.36 7.80 -2.91 -0.02 3.34 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.94 -56.89 13.29 21.45 0.28 -56.60 16 15 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C 0.04 1.46 4.20 44.91 0.19 1.65 16 20 C -0.19 -7.60 8.87 30.59 0.27 -7.33 16 21 C -0.20 -6.89 8.33 30.59 0.25 -6.63 16 22 H 0.09 2.57 7.99 -2.92 -0.02 2.55 16 23 H 0.12 2.42 7.99 -2.91 -0.02 2.40 16 24 H 0.08 2.07 5.02 -2.39 -0.01 2.05 16 25 H 0.04 0.93 7.28 -2.39 -0.02 0.91 16 26 H 0.34 6.91 8.47 -89.70 -0.76 6.15 16 27 H 0.07 1.35 7.80 -2.38 -0.02 1.33 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.76 7.45 -2.38 -0.02 0.74 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.03 1.16 6.86 -2.38 -0.02 1.14 16 35 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 36 H -0.03 -1.58 6.02 -2.38 -0.01 -1.59 16 37 H 0.00 -0.27 7.78 -2.39 -0.02 -0.29 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.12 4.16 7.65 -2.38 -0.02 4.14 16 40 H 0.09 4.47 4.91 -2.39 -0.01 4.46 16 41 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 42 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.07 2.58 7.14 -2.39 -0.02 2.56 16 Total: -1.00 -62.63 337.18 0.29 -62.35 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.21 Total: 22.31 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.97 Total: -30.03 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.91 Total: -101.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.63 0.29 -62.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231609659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.703 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds