Wall clock time and date at job start Mon Mar 30 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49508 * 2 1 4 4 C 1.53047 * 109.48727 * 239.95399 * 2 1 3 5 5 N 1.46958 * 109.36896 * 181.61210 * 4 2 1 6 6 C 1.46896 * 111.00600 * 183.18938 * 5 4 2 7 7 C 1.52997 * 109.46848 * 306.04355 * 6 5 4 8 8 C 1.52999 * 109.47317 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 6 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 11 11 C 1.53000 * 109.47053 * 66.04069 * 6 5 4 12 12 C 1.46960 * 110.88063 * 59.31637 * 5 4 2 13 13 H 1.09006 * 109.48477 * 60.64919 * 12 5 4 14 14 C 1.50698 * 109.49153 * 180.71729 * 12 5 4 15 15 H 1.07999 * 119.99782 * 0.02562 * 14 12 5 16 16 C 1.37874 * 120.00461 * 180.02562 * 14 12 5 17 17 N 1.31523 * 119.99609 * 0.02562 * 16 14 12 18 18 Si 1.86791 * 120.00433 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47095 * 119.99728 * 18 16 14 21 21 H 1.48497 * 109.47456 * 239.99827 * 18 16 14 22 22 C 1.53047 * 109.36538 * 300.68575 * 12 5 4 23 23 N 1.46955 * 109.50907 * 120.05447 * 2 1 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46380 * 300.04667 * 1 2 3 26 26 H 1.08999 * 109.46782 * 60.04235 * 1 2 3 27 27 H 1.09000 * 109.49063 * 61.64423 * 4 2 1 28 28 H 1.09008 * 109.49249 * 301.57914 * 4 2 1 29 29 H 1.09002 * 109.47220 * 186.04424 * 6 5 4 30 30 H 1.08996 * 109.47853 * 300.00000 * 7 6 5 31 31 H 1.09002 * 109.47153 * 60.00028 * 7 6 5 32 32 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 34 34 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 35 35 H 1.09001 * 109.46812 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 38 38 H 1.08992 * 109.47399 * 300.00238 * 11 6 5 39 39 H 1.09004 * 109.46724 * 60.00724 * 11 6 5 40 40 H 0.96995 * 120.00043 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.48793 * 298.43230 * 22 12 5 42 42 H 1.09000 * 109.49063 * 178.36541 * 22 12 5 43 43 H 1.00902 * 110.99876 * 303.16884 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 3.5096 -0.7547 -1.2269 6 6 4.0410 -1.3744 -2.4482 7 6 3.4038 -2.7521 -2.6397 8 6 3.9567 -3.3974 -3.9121 9 6 3.6297 -2.5122 -5.1164 10 6 4.2670 -1.1345 -4.9249 11 6 3.7144 -0.4895 -3.6528 12 6 4.0004 -1.4484 -0.0279 13 1 3.6366 -2.4760 -0.0279 14 6 5.5074 -1.4480 -0.0282 15 1 6.0471 -0.9791 -0.8376 16 6 6.1972 -2.0462 1.0049 17 7 5.5399 -2.6178 1.9904 18 14 8.0651 -2.0464 1.0042 19 1 8.5597 -1.3444 -0.2074 20 1 8.5606 -1.3477 2.2173 21 1 8.5601 -3.4464 1.0024 22 6 3.4898 -0.7260 1.2210 23 7 2.0208 -0.6937 1.1989 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5146 0.8896 26 1 -0.3633 0.5132 -0.8904 27 1 1.7018 -0.1928 -2.1394 28 1 1.6546 -1.7418 -1.2628 29 1 5.1220 -1.4832 -2.3597 30 1 3.6364 -3.3826 -1.7816 31 1 2.3228 -2.6433 -2.7282 32 1 3.5024 -4.3787 -4.0488 33 1 5.0377 -3.5061 -3.8239 34 1 2.5487 -2.4034 -5.2045 35 1 4.0241 -2.9717 -6.0228 36 1 4.0344 -0.5041 -5.7830 37 1 5.3479 -1.2433 -4.8367 38 1 2.6335 -0.3807 -3.7413 39 1 4.1685 0.4920 -3.5163 40 1 6.0251 -3.0390 2.7170 41 1 3.8758 0.2933 1.2348 42 1 3.8286 -1.2556 2.1115 43 1 1.6557 -0.2681 2.0378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251801384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:57 Heat of formation + Delta-G solvation = -11.256487 kcal Electronic energy + Delta-G solvation = -20434.049124 eV Core-core repulsion = 17705.946702 eV Total energy + Delta-G solvation = -2728.102422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23023 -36.95593 -33.85546 -32.84284 -30.76250 -30.29698 -28.55452 -27.13064 -24.37684 -23.87593 -22.26400 -21.29681 -20.44739 -19.27442 -18.18342 -16.50675 -15.41238 -15.12091 -14.60894 -14.14216 -14.05470 -13.79488 -13.61295 -13.21170 -13.05992 -12.90499 -12.29471 -12.09240 -11.79125 -11.67768 -11.54420 -11.32298 -10.97145 -10.76570 -10.71637 -10.63950 -10.38382 -10.26644 -10.13530 -9.99377 -9.76139 -9.69236 -9.21135 -8.82560 -8.46188 -7.53616 -7.00695 -6.02253 -4.06408 3.28714 3.37096 3.41223 4.40015 4.87626 5.02069 5.12204 5.21117 5.31910 5.36236 5.53733 5.63157 5.71985 5.83739 5.88391 5.91670 5.96188 6.00554 6.04598 6.08531 6.20221 6.27575 6.36421 6.38223 6.44686 6.47855 6.57125 6.60746 6.67601 6.71294 6.85810 6.93186 7.00151 7.12491 7.47275 7.67936 7.79934 7.97316 8.19683 8.25757 8.41992 8.67445 9.02250 9.58659 11.04386 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.010393 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.822373 B = 2693.377230 C = 4166.090428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.033 0.967 4 C 0.062 3.938 5 N -0.533 5.533 6 C 0.094 3.906 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.223 3.777 13 H 0.011 0.989 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.067 3.933 23 N -0.692 5.692 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.260 0.740 41 H 0.010 0.990 42 H 0.106 0.894 43 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 2.463 -8.668 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.051 0.949 4 C -0.067 4.067 5 N -0.256 5.256 6 C -0.015 4.015 7 C -0.186 4.186 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.117 3.883 13 H 0.028 0.972 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.722 3.278 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.061 4.061 23 N -0.322 5.322 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.124 0.876 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.984 2.233 -8.741 10.826 hybrid contribution 0.883 0.059 0.378 0.962 sum -5.101 2.293 -8.363 10.061 Atomic orbital electron populations 1.21783 0.95616 1.01867 1.00669 1.21448 0.93452 0.95600 0.92100 0.94938 1.22098 0.90415 0.98366 0.95828 1.62401 1.05323 1.54558 1.03308 1.21582 1.00923 0.90129 0.88821 1.22154 0.99669 0.99129 0.97609 1.21464 1.01133 0.97762 0.94837 1.21525 1.00231 0.95956 0.97678 1.21498 1.00455 0.95968 0.97536 1.21595 1.00132 0.99182 0.93944 1.19215 0.93973 0.91392 0.83754 0.97150 1.21177 0.90484 1.35392 1.07223 0.91811 1.24945 0.98392 0.95232 0.95549 1.69896 1.34975 1.37249 1.10748 0.86508 0.85750 0.77594 0.77989 1.19752 1.21088 1.21126 1.22302 0.82483 0.98119 1.03219 1.60771 1.11960 1.56606 1.02898 0.92267 0.93239 0.92933 0.92283 0.94944 0.88825 0.91262 0.92915 0.92965 0.92012 0.92596 0.92835 0.92749 0.92065 0.92871 0.91874 0.92983 0.97162 0.87647 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.47 37.16 0.35 -1.69 16 2 C 0.08 1.54 3.19 -67.66 -0.22 1.33 16 3 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.06 1.18 4.03 -3.77 -0.02 1.16 16 5 N -0.53 -11.48 4.47 -219.94 -0.98 -12.46 16 6 C 0.09 1.82 1.98 -67.72 -0.13 1.69 16 7 C -0.15 -2.67 4.45 -26.73 -0.12 -2.79 16 8 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 9 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 10 C -0.12 -1.60 5.92 -26.75 -0.16 -1.76 16 11 C -0.11 -1.78 5.13 -26.75 -0.14 -1.91 16 12 C 0.22 5.59 1.67 -68.81 -0.11 5.48 16 13 H 0.01 0.31 6.75 -51.93 -0.35 -0.04 16 14 C -0.50 -13.54 7.80 -34.44 -0.27 -13.81 16 15 H 0.06 1.73 6.51 -52.49 -0.34 1.39 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.99 11.35 55.43 0.63 -24.36 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.07 1.64 5.76 -3.77 -0.02 1.61 16 23 N -0.69 -14.19 6.55 -106.59 -0.70 -14.89 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.01 6.33 -51.93 -0.33 0.69 16 28 H 0.03 0.65 6.41 -51.92 -0.33 0.32 16 29 H 0.09 2.05 5.99 -51.93 -0.31 1.74 16 30 H 0.07 1.48 6.75 -51.93 -0.35 1.13 16 31 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.82 6.49 -51.93 -0.34 0.49 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.11 2.83 6.13 -51.93 -0.32 2.51 16 43 H 0.32 5.91 8.83 -39.29 -0.35 5.56 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -27.49 312.38 -10.17 -37.66 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.56 Total: 5.98 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.24 Total: -12.73 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.05 Total: -51.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.49 -10.17 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251801384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.400 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds