Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.60980 * 2 1 4 4 C 1.52924 * 109.54415 * 120.21885 * 2 1 3 5 5 N 1.47123 * 109.74774 * 61.05146 * 4 2 1 6 6 C 1.47048 * 109.88350 * 182.14033 * 5 4 2 7 7 C 1.52908 * 109.88693 * 175.25821 * 6 5 4 8 8 C 1.53183 * 109.00215 * 59.60197 * 7 6 5 9 9 C 1.53007 * 108.86903 * 301.71161 * 8 7 6 10 10 C 1.46825 * 111.17230 * 58.42883 * 5 4 2 11 11 H 1.09001 * 109.51950 * 62.75036 * 10 5 4 12 12 C 1.53153 * 109.75721 * 302.49099 * 10 5 4 13 13 N 1.46833 * 109.76121 * 57.47925 * 12 10 5 14 14 C 1.46895 * 111.00277 * 176.76816 * 13 12 10 15 15 C 1.52997 * 109.47269 * 175.91789 * 14 13 12 16 16 C 1.50698 * 109.47506 * 174.51306 * 15 14 13 17 17 H 1.07999 * 119.99731 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00421 * 179.72974 * 16 15 14 19 19 N 1.31520 * 119.99742 * 0.27320 * 18 16 15 20 20 Si 1.86801 * 120.00223 * 180.27546 * 18 16 15 21 21 H 1.48502 * 109.46957 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47056 * 119.99697 * 20 18 16 23 23 H 1.48501 * 109.47029 * 239.99674 * 20 18 16 24 24 H 1.08992 * 109.46850 * 185.25230 * 1 2 3 25 25 H 1.09004 * 109.46664 * 305.25060 * 1 2 3 26 26 H 1.08999 * 109.47235 * 65.24791 * 1 2 3 27 27 H 1.09001 * 109.42586 * 300.96834 * 4 2 1 28 28 H 1.09001 * 109.37670 * 181.11143 * 4 2 1 29 29 H 1.09001 * 109.40469 * 295.38697 * 6 5 4 30 30 H 1.08999 * 109.39849 * 55.21699 * 6 5 4 31 31 H 1.09008 * 109.55345 * 179.45490 * 7 6 5 32 32 H 1.09000 * 109.55010 * 299.74429 * 7 6 5 33 33 H 1.08996 * 109.57271 * 61.52903 * 8 7 6 34 34 H 1.09003 * 109.57184 * 181.90135 * 8 7 6 35 35 H 1.08995 * 109.44862 * 297.89198 * 9 8 7 36 36 H 1.09001 * 109.44427 * 177.98434 * 9 8 7 37 37 H 1.09003 * 109.42130 * 297.39217 * 12 10 5 38 38 H 1.09002 * 109.37566 * 177.53947 * 12 10 5 39 39 H 1.08996 * 109.47015 * 55.92382 * 14 13 12 40 40 H 1.09000 * 109.47696 * 295.91827 * 14 13 12 41 41 H 1.09011 * 109.46892 * 54.51318 * 15 14 13 42 42 H 1.08995 * 109.47614 * 294.51614 * 15 14 13 43 43 H 0.96998 * 119.99595 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0416 -0.7253 1.2453 5 7 1.5763 -2.1210 1.2340 6 6 2.0235 -2.8072 2.4552 7 6 1.4421 -4.2207 2.5002 8 6 1.9163 -4.9946 1.2661 9 6 1.4671 -4.2457 0.0097 10 6 2.0343 -2.8229 0.0285 11 1 3.1236 -2.8623 0.0217 12 6 1.5413 -2.0845 -1.2194 13 7 2.0217 -0.6971 -1.1975 14 6 1.6286 0.0155 -2.4203 15 6 2.0569 1.4807 -2.3168 16 6 1.7757 2.1797 -3.6219 17 1 1.3350 1.6337 -4.4429 18 6 2.0752 3.5179 -3.7658 19 7 2.6113 4.1829 -2.7658 20 14 1.7194 4.3862 -5.3810 21 1 1.1206 3.4229 -6.3395 22 1 0.7707 5.5037 -5.1438 23 1 2.9848 4.9222 -5.9440 24 1 -0.3633 -1.0233 0.0941 25 1 -0.3633 0.5932 0.8393 26 1 -0.3634 0.4303 -0.9332 27 1 1.6644 -0.2247 2.1370 28 1 3.1314 -0.7065 1.2526 29 1 3.1121 -2.8631 2.4611 30 1 1.6848 -2.2497 3.3284 31 1 1.7848 -4.7276 3.4023 32 1 0.3534 -4.1675 2.5012 33 1 3.0036 -5.0693 1.2775 34 1 1.4797 -5.9933 1.2714 35 1 0.3784 -4.2019 -0.0170 36 1 1.8306 -4.7696 -0.8744 37 1 0.4514 -2.0904 -1.2371 38 1 1.9210 -2.5856 -2.1098 39 1 0.5466 -0.0390 -2.5407 40 1 2.1136 -0.4448 -3.2811 41 1 3.1238 1.5328 -2.0993 42 1 1.4988 1.9668 -1.5167 43 1 2.8217 5.1244 -2.8670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252660730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = -6.074322 kcal Electronic energy + Delta-G solvation = -19799.910569 eV Core-core repulsion = 17072.032863 eV Total energy + Delta-G solvation = -2727.877706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02589 -37.10959 -33.78291 -32.96297 -31.79689 -30.40679 -28.90649 -26.50250 -25.23185 -23.25475 -23.14416 -22.59250 -20.53698 -19.60389 -18.10542 -16.52960 -15.93456 -15.43800 -14.91443 -14.56110 -14.42207 -14.34553 -14.19185 -13.45581 -13.33222 -12.95813 -12.80287 -12.20438 -11.93111 -11.79790 -11.62874 -11.40061 -11.18091 -11.08323 -10.97964 -10.81028 -10.70274 -10.61551 -10.45864 -10.25542 -9.98426 -9.78764 -9.22978 -9.05093 -8.32609 -8.17954 -7.59952 -5.98411 -4.00240 3.32225 3.39663 3.43761 3.97321 4.39210 4.54929 4.75581 4.78775 4.87920 5.15026 5.29836 5.36311 5.37869 5.44435 5.53245 5.54409 5.60446 5.73210 5.78436 5.83071 5.91144 5.92927 5.98825 6.02370 6.06594 6.11578 6.16585 6.29652 6.39647 6.40503 6.44583 6.67106 6.82502 6.99517 7.16714 7.26442 7.58098 7.65562 7.83944 7.91425 8.09451 8.45769 9.06841 9.63404 11.13075 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048530 B = 0.004571 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.823109 B = 6124.708719 C = 6405.672352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 H 0.099 0.901 4 C 0.063 3.937 5 N -0.528 5.528 6 C 0.053 3.947 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.112 4.112 10 C 0.091 3.909 11 H 0.046 0.954 12 C 0.057 3.943 13 N -0.534 5.534 14 C 0.062 3.938 15 C 0.025 3.975 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.019 0.981 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -15.913 9.953 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.030 4.030 3 H 0.117 0.883 4 C -0.065 4.065 5 N -0.253 5.253 6 C -0.075 4.075 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.150 4.150 10 C -0.018 4.018 11 H 0.063 0.937 12 C -0.072 4.072 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.013 4.013 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.213 -15.745 9.993 18.779 hybrid contribution -0.135 0.646 -0.905 1.120 sum -2.348 -15.098 9.089 17.778 Atomic orbital electron populations 1.22272 0.97301 1.01919 1.01740 1.21799 0.93395 0.98758 0.89066 0.88280 1.22198 0.97963 0.88052 0.98332 1.62321 1.59422 1.02169 1.01419 1.22076 0.97321 0.94945 0.93135 1.21572 1.01448 0.94771 0.97570 1.21564 1.00615 0.98531 0.95054 1.21614 1.01485 0.94352 0.97578 1.21640 0.97390 0.92804 0.89985 0.93652 1.22164 0.98197 0.90453 0.96391 1.62582 1.58769 1.01126 1.03296 1.22316 0.97057 0.97572 0.89535 1.19161 0.97312 0.87840 0.96949 1.21228 1.40981 0.94770 0.98832 0.92759 1.24985 0.95248 0.97571 0.96487 1.69980 1.43226 1.09142 1.30972 0.86554 0.77944 0.79622 0.83989 1.19772 1.21057 1.21014 0.91906 0.93088 0.92380 0.90772 0.94302 0.95178 0.91024 0.91894 0.91211 0.92343 0.91997 0.91286 0.91615 0.94193 0.91139 0.95982 0.92121 0.95799 0.96311 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.39 37.16 0.31 -2.60 16 2 C 0.08 1.39 2.50 -67.68 -0.17 1.22 16 3 H 0.10 2.01 6.11 -51.92 -0.32 1.69 16 4 C 0.06 0.94 4.97 -3.74 -0.02 0.92 16 5 N -0.53 -7.14 3.94 -226.30 -0.89 -8.03 16 6 C 0.05 0.60 5.37 -3.79 -0.02 0.58 16 7 C -0.12 -1.10 6.10 -26.68 -0.16 -1.26 16 8 C -0.12 -1.13 6.01 -26.63 -0.16 -1.29 16 9 C -0.11 -1.23 5.29 -26.64 -0.14 -1.37 16 10 C 0.09 1.23 2.35 -67.58 -0.16 1.07 16 11 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 12 C 0.06 0.89 4.43 -3.78 -0.02 0.87 16 13 N -0.53 -9.99 4.78 -226.55 -1.08 -11.07 16 14 C 0.06 1.33 4.56 -3.83 -0.02 1.31 16 15 C 0.02 0.64 4.29 -27.89 -0.12 0.52 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H 0.06 1.01 6.04 -51.93 -0.31 0.70 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 27 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.64 6.40 -51.93 -0.33 0.31 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.47 6.68 -51.93 -0.35 0.13 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.02 0.51 6.58 -51.93 -0.34 0.17 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -29.50 318.01 -10.41 -39.92 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.86 Total: -2.62 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.08 Total: -13.56 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -1.24 Total: -45.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.50 -10.41 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252660730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.844 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds