Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.60980 * 2 1 4 4 C 1.52924 * 109.54415 * 120.21885 * 2 1 3 5 5 N 1.47123 * 109.74774 * 61.05146 * 4 2 1 6 6 C 1.47048 * 109.88350 * 182.14033 * 5 4 2 7 7 C 1.52908 * 109.88693 * 175.25821 * 6 5 4 8 8 C 1.53183 * 109.00215 * 59.60197 * 7 6 5 9 9 C 1.53007 * 108.86903 * 301.71161 * 8 7 6 10 10 C 1.46825 * 111.17230 * 58.42883 * 5 4 2 11 11 H 1.09001 * 109.51950 * 62.75036 * 10 5 4 12 12 C 1.53153 * 109.75721 * 302.49099 * 10 5 4 13 13 N 1.46833 * 109.76121 * 57.47925 * 12 10 5 14 14 C 1.46895 * 111.00277 * 176.76816 * 13 12 10 15 15 C 1.52997 * 109.47269 * 175.91789 * 14 13 12 16 16 C 1.50698 * 109.47506 * 174.51306 * 15 14 13 17 17 H 1.07999 * 119.99731 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00421 * 179.72974 * 16 15 14 19 19 N 1.31520 * 119.99742 * 0.27320 * 18 16 15 20 20 Si 1.86801 * 120.00223 * 180.27546 * 18 16 15 21 21 H 1.48502 * 109.46957 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47056 * 119.99697 * 20 18 16 23 23 H 1.48501 * 109.47029 * 239.99674 * 20 18 16 24 24 H 1.08992 * 109.46850 * 185.25230 * 1 2 3 25 25 H 1.09004 * 109.46664 * 305.25060 * 1 2 3 26 26 H 1.08999 * 109.47235 * 65.24791 * 1 2 3 27 27 H 1.09001 * 109.42586 * 300.96834 * 4 2 1 28 28 H 1.09001 * 109.37670 * 181.11143 * 4 2 1 29 29 H 1.09001 * 109.40469 * 295.38697 * 6 5 4 30 30 H 1.08999 * 109.39849 * 55.21699 * 6 5 4 31 31 H 1.09008 * 109.55345 * 179.45490 * 7 6 5 32 32 H 1.09000 * 109.55010 * 299.74429 * 7 6 5 33 33 H 1.08996 * 109.57271 * 61.52903 * 8 7 6 34 34 H 1.09003 * 109.57184 * 181.90135 * 8 7 6 35 35 H 1.08995 * 109.44862 * 297.89198 * 9 8 7 36 36 H 1.09001 * 109.44427 * 177.98434 * 9 8 7 37 37 H 1.09003 * 109.42130 * 297.39217 * 12 10 5 38 38 H 1.09002 * 109.37566 * 177.53947 * 12 10 5 39 39 H 1.08996 * 109.47015 * 55.92382 * 14 13 12 40 40 H 1.09000 * 109.47696 * 295.91827 * 14 13 12 41 41 H 1.09011 * 109.46892 * 54.51318 * 15 14 13 42 42 H 1.08995 * 109.47614 * 294.51614 * 15 14 13 43 43 H 0.96998 * 119.99595 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0416 -0.7253 1.2453 5 7 1.5763 -2.1210 1.2340 6 6 2.0235 -2.8072 2.4552 7 6 1.4421 -4.2207 2.5002 8 6 1.9163 -4.9946 1.2661 9 6 1.4671 -4.2457 0.0097 10 6 2.0343 -2.8229 0.0285 11 1 3.1236 -2.8623 0.0217 12 6 1.5413 -2.0845 -1.2194 13 7 2.0217 -0.6971 -1.1975 14 6 1.6286 0.0155 -2.4203 15 6 2.0569 1.4807 -2.3168 16 6 1.7757 2.1797 -3.6219 17 1 1.3350 1.6337 -4.4429 18 6 2.0752 3.5179 -3.7658 19 7 2.6113 4.1829 -2.7658 20 14 1.7194 4.3862 -5.3810 21 1 1.1206 3.4229 -6.3395 22 1 0.7707 5.5037 -5.1438 23 1 2.9848 4.9222 -5.9440 24 1 -0.3633 -1.0233 0.0941 25 1 -0.3633 0.5932 0.8393 26 1 -0.3634 0.4303 -0.9332 27 1 1.6644 -0.2247 2.1370 28 1 3.1314 -0.7065 1.2526 29 1 3.1121 -2.8631 2.4611 30 1 1.6848 -2.2497 3.3284 31 1 1.7848 -4.7276 3.4023 32 1 0.3534 -4.1675 2.5012 33 1 3.0036 -5.0693 1.2775 34 1 1.4797 -5.9933 1.2714 35 1 0.3784 -4.2019 -0.0170 36 1 1.8306 -4.7696 -0.8744 37 1 0.4514 -2.0904 -1.2371 38 1 1.9210 -2.5856 -2.1098 39 1 0.5466 -0.0390 -2.5407 40 1 2.1136 -0.4448 -3.2811 41 1 3.1238 1.5328 -2.0993 42 1 1.4988 1.9668 -1.5167 43 1 2.8217 5.1244 -2.8670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252660730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = -24.899413 kcal Electronic energy + Delta-G solvation = -19800.726886 eV Core-core repulsion = 17072.032863 eV Total energy + Delta-G solvation = -2728.694024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23654 -38.36918 -35.44060 -34.50242 -33.07610 -31.86892 -30.48280 -27.76658 -26.93933 -24.76445 -24.33965 -23.77607 -22.07148 -20.59444 -19.51694 -18.62599 -17.23440 -16.66155 -16.42227 -16.37360 -15.67320 -15.49093 -15.32231 -14.89437 -14.39863 -14.29361 -14.14762 -13.77386 -13.50531 -13.26443 -12.90878 -12.87983 -12.78912 -12.45709 -12.38160 -12.25908 -12.06988 -11.94954 -11.66790 -11.55421 -11.47292 -11.25769 -11.11882 -10.82192 -10.54252 -9.32203 -9.09055 -8.20482 -6.31477 1.39595 1.39944 1.53315 2.39962 2.91341 3.05482 3.13093 3.77533 3.87160 3.93463 4.09403 4.18504 4.30875 4.33346 4.38066 4.42625 4.53742 4.61615 4.62665 4.66574 4.69495 4.74500 4.83440 4.91363 4.96320 4.98898 5.07616 5.08251 5.12433 5.15830 5.25338 5.31366 5.40450 5.46828 5.52258 5.65398 5.78977 6.06178 6.08689 6.22200 6.34181 6.36285 6.85158 7.37558 8.91802 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048530 B = 0.004571 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.823109 B = 6124.708719 C = 6405.672352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.077 3.923 3 H 0.063 0.937 4 C 0.071 3.929 5 N -0.530 5.530 6 C 0.050 3.950 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.107 4.107 10 C 0.094 3.906 11 H 0.032 0.968 12 C 0.057 3.943 13 N -0.545 5.545 14 C 0.079 3.921 15 C 0.037 3.963 16 C -0.543 4.543 17 H 0.058 0.942 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.090 0.910 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.059 0.941 41 H -0.011 1.011 42 H -0.002 1.002 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -17.628 10.112 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.032 4.032 3 H 0.081 0.919 4 C -0.057 4.057 5 N -0.255 5.255 6 C -0.077 4.077 7 C -0.149 4.149 8 C -0.155 4.155 9 C -0.145 4.145 10 C -0.015 4.015 11 H 0.050 0.950 12 C -0.071 4.071 13 N -0.269 5.269 14 C -0.048 4.048 15 C 0.000 4.000 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.008 0.992 42 H 0.016 0.984 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.021 -17.486 10.164 20.450 hybrid contribution 0.145 1.180 -0.904 1.493 sum -2.875 -16.306 9.261 18.972 Atomic orbital electron populations 1.22137 0.96367 1.02496 1.00907 1.21734 0.94067 0.97355 0.90037 0.91882 1.22059 0.97148 0.89264 0.97245 1.62358 1.59322 1.01395 1.02447 1.22199 0.97321 0.96095 0.92088 1.21567 1.01246 0.93517 0.98548 1.21568 1.00738 0.99193 0.94005 1.21591 1.01265 0.92534 0.99119 1.21628 0.96657 0.94172 0.89032 0.94999 1.22260 0.98175 0.88524 0.98125 1.62519 1.59400 1.02597 1.02390 1.21949 0.96793 0.95005 0.91062 1.18941 0.94725 0.90768 0.95572 1.21644 1.41244 0.95562 0.99725 0.92333 1.25938 0.94755 0.98400 1.00418 1.70114 1.44032 1.09636 1.33330 0.85396 0.78010 0.78386 0.79227 1.18614 1.20292 1.20341 0.90788 0.91915 0.94793 0.89168 0.95497 0.95479 0.90091 0.89837 0.91328 0.92349 0.90084 0.91338 0.90612 0.94190 0.90510 0.95915 0.92241 0.99219 0.98361 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.41 8.39 71.98 0.60 -4.81 16 2 C 0.08 2.80 2.50 44.86 0.11 2.91 16 3 H 0.06 2.73 6.11 -2.38 -0.01 2.72 16 4 C 0.07 2.11 4.97 86.24 0.43 2.54 16 5 N -0.53 -13.55 3.94 -869.87 -3.43 -16.98 16 6 C 0.05 1.02 5.37 86.24 0.46 1.48 16 7 C -0.11 -1.75 6.10 30.62 0.19 -1.56 16 8 C -0.12 -1.85 6.01 30.66 0.18 -1.66 16 9 C -0.11 -2.08 5.29 30.65 0.16 -1.92 16 10 C 0.09 2.44 2.35 45.04 0.11 2.54 16 11 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 12 C 0.06 1.76 4.43 86.37 0.38 2.14 16 13 N -0.55 -20.87 4.78 -870.67 -4.17 -25.03 16 14 C 0.08 3.52 4.56 86.30 0.39 3.91 16 15 C 0.04 2.04 4.29 29.85 0.13 2.16 16 16 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.17 5.46 84.65 0.46 0.63 16 19 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 20 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H 0.07 2.31 6.04 -2.39 -0.01 2.30 16 25 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.03 1.28 6.43 -2.39 -0.02 1.27 16 27 H 0.09 2.37 8.10 -2.39 -0.02 2.35 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.04 1.24 6.40 -2.39 -0.02 1.22 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.02 1.00 6.68 -2.39 -0.02 0.98 16 40 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 41 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 42 H 0.00 -0.11 6.58 -2.39 -0.02 -0.12 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.55 318.01 -0.49 -65.04 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.95 Total: 10.31 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 3.85 Total: -23.07 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -7.31 Total: -99.22 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.55 -0.49 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252660730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.143 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds