Wall clock time and date at job start Mon Mar 30 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09003 * 110.36708 * 2 1 4 4 C 1.49464 * 110.51678 * 237.56576 * 2 1 3 5 5 H 1.09007 * 108.56913 * 163.39842 * 4 2 1 6 6 C 1.49473 * 129.10789 * 29.69109 * 4 2 1 7 7 N 1.49774 * 104.56865 * 211.48622 * 6 4 2 8 8 C 1.50110 * 107.61855 * 6.75885 * 7 6 4 9 9 C 1.51378 * 102.37460 * 25.80294 * 8 7 6 10 10 H 1.09001 * 111.21070 * 72.31573 * 9 8 7 11 11 C 1.51369 * 124.04142 * 209.25610 * 9 8 7 12 12 N 1.49772 * 110.41536 * 122.36163 * 2 1 3 13 13 C 1.46900 * 111.00250 * 233.77536 * 12 2 1 14 14 C 1.52996 * 109.47483 * 170.47458 * 13 12 2 15 15 C 1.52993 * 109.47140 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47377 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00549 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00007 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00081 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47214 * 119.99721 * 21 19 17 24 24 H 1.48496 * 109.47176 * 240.00156 * 21 19 17 25 25 H 1.08994 * 109.46915 * 299.09310 * 1 2 3 26 26 H 1.08994 * 109.46633 * 59.08975 * 1 2 3 27 27 H 1.08992 * 109.46486 * 179.09118 * 1 2 3 28 28 H 1.09000 * 110.41729 * 92.71168 * 6 4 2 29 29 H 1.09006 * 110.41186 * 330.26064 * 6 4 2 30 30 H 1.00901 * 110.99822 * 245.11401 * 7 6 4 31 31 H 1.09009 * 110.82098 * 144.02062 * 8 7 6 32 32 H 1.08996 * 110.82801 * 267.38138 * 8 7 6 33 33 H 1.09003 * 110.82745 * 268.95614 * 11 9 8 34 34 H 1.08999 * 110.82762 * 32.31849 * 11 9 8 35 35 H 1.08996 * 109.47176 * 290.48035 * 13 12 2 36 36 H 1.09005 * 109.46990 * 50.47589 * 13 12 2 37 37 H 1.08996 * 109.47386 * 300.00449 * 14 13 12 38 38 H 1.09005 * 109.46900 * 60.00076 * 14 13 12 39 39 H 1.08999 * 109.47576 * 300.00001 * 15 14 13 40 40 H 1.09002 * 109.47489 * 60.00928 * 15 14 13 41 41 H 1.09005 * 109.47324 * 300.00261 * 16 15 14 42 42 H 1.09005 * 109.47034 * 59.99945 * 16 15 14 43 43 H 0.96998 * 120.00322 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9095 1.0219 0.0000 4 6 2.0540 -0.7508 -1.1815 5 1 3.1031 -0.4898 -1.3213 6 6 1.4407 -0.9289 -2.5329 7 7 1.9056 -2.2799 -2.9825 8 6 2.6277 -2.9181 -1.8316 9 6 2.0005 -2.2341 -0.6356 10 1 0.9808 -2.5825 -0.4720 11 6 2.7161 -1.9981 0.6772 12 7 2.0526 -0.7513 1.1856 13 6 2.9957 0.0704 1.9558 14 6 3.3237 -0.6310 3.2754 15 6 4.3065 0.2246 4.0772 16 6 4.6349 -0.4771 5.3966 17 6 5.6024 0.3658 6.1866 18 1 5.9483 1.3081 5.7879 19 6 6.0455 -0.0653 7.4191 20 7 5.6240 -1.2123 7.9050 21 14 7.2454 0.9793 8.3981 22 1 7.5627 2.2139 7.6363 23 1 6.6342 1.3456 9.7010 24 1 8.4927 0.2093 8.6355 25 1 -0.3633 0.4997 0.8980 26 1 -0.3632 0.5279 -0.8817 27 1 -0.3632 -1.0275 -0.0163 28 1 1.7961 -0.1577 -3.2164 29 1 0.3532 -0.9046 -2.4632 30 1 2.5063 -2.2054 -3.7898 31 1 2.4421 -3.9919 -1.8053 32 1 3.6969 -2.7124 -1.8829 33 1 2.5538 -2.8304 1.3621 34 1 3.7814 -1.8348 0.5141 35 1 3.9111 0.2085 1.3805 36 1 2.5465 1.0418 2.1625 37 1 2.4083 -0.7691 3.8508 38 1 3.7729 -1.6024 3.0687 39 1 5.2218 0.3622 3.5017 40 1 3.8577 1.1961 4.2840 41 1 3.7197 -0.6152 5.9724 42 1 5.0839 -1.4486 5.1895 43 1 5.9354 -1.5155 8.7722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385333456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:01 Heat of formation + Delta-G solvation = 7.620155 kcal Electronic energy + Delta-G solvation = -18810.463631 eV Core-core repulsion = 16083.179762 eV Total energy + Delta-G solvation = -2727.283869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.93561 -36.76460 -34.60249 -32.68682 -31.70641 -30.43537 -28.29234 -27.61670 -25.55756 -24.43286 -22.55958 -20.86678 -20.65707 -20.00056 -19.27620 -16.71268 -16.28951 -16.12725 -15.40626 -14.99951 -14.45459 -14.27983 -13.99445 -13.61858 -13.21862 -12.95442 -12.68630 -12.49268 -12.31214 -12.00590 -11.83361 -11.67976 -11.43228 -11.16693 -11.08761 -10.96152 -10.79884 -10.51782 -10.46143 -10.41519 -10.18690 -9.60548 -9.24180 -8.97905 -8.87177 -8.34704 -8.31417 -5.96621 -3.98735 3.32323 3.39563 3.43810 3.70497 3.71907 3.83412 4.42444 4.48552 4.74053 4.86112 5.03762 5.15014 5.24839 5.28262 5.30955 5.36808 5.39055 5.45399 5.48560 5.58217 5.64910 5.67918 5.80069 5.88972 5.91442 5.93189 6.06374 6.16019 6.23582 6.27589 6.32442 6.52942 6.80352 6.91400 6.95479 6.99492 7.07813 7.25605 7.72946 7.88881 8.04746 8.47636 9.09044 9.65042 11.14766 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045802 B = 0.003354 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.183006 B = 8346.337727 C = 8553.296494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.067 0.933 4 C -0.152 4.152 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.681 5.681 8 C 0.058 3.942 9 C -0.119 4.119 10 H 0.097 0.903 11 C 0.057 3.943 12 N -0.518 5.518 13 C 0.051 3.949 14 C -0.111 4.111 15 C -0.109 4.109 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.336 0.664 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 -0.355 -21.344 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.172 4.172 5 H 0.079 0.921 6 C -0.062 4.062 7 N -0.309 5.309 8 C -0.071 4.071 9 C -0.138 4.138 10 H 0.116 0.884 11 C -0.070 4.070 12 N -0.242 5.242 13 C -0.077 4.077 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.530 -0.928 -20.751 22.854 hybrid contribution 2.371 1.284 0.153 2.700 sum -7.159 0.356 -20.598 21.810 Atomic orbital electron populations 1.21682 0.93843 1.02167 1.01271 1.21365 0.96538 0.96205 0.87959 0.91446 1.22441 1.00994 0.97873 0.95942 0.92117 1.21670 1.01140 0.89786 0.93596 1.63510 1.41578 1.19067 1.06788 1.22250 0.95772 0.99457 0.89636 1.22687 1.01911 0.95070 0.94169 0.88429 1.22451 0.96187 0.93934 0.94473 1.65229 1.34789 1.04949 1.19270 1.22430 0.93305 0.96733 0.95269 1.21607 1.00192 0.99001 0.94058 1.21602 0.96602 0.98376 0.98163 1.19088 0.96470 0.95566 0.90447 1.21331 1.26233 1.05610 1.02601 0.92759 1.25038 0.96656 0.95132 0.97739 1.69975 1.44587 1.20320 1.18645 0.86561 0.81034 0.80498 0.80058 1.19785 1.21014 1.21045 0.92176 0.92717 0.92253 0.92435 0.90020 0.84899 0.89753 0.93462 0.89546 0.93135 0.95249 0.91027 0.91660 0.92715 0.93822 0.93503 0.96592 0.96758 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.85 37.16 0.33 -0.97 16 2 C 0.09 0.96 3.21 -67.84 -0.22 0.74 16 3 H 0.07 0.74 7.59 -51.93 -0.39 0.35 16 4 C -0.15 -1.48 2.33 -91.28 -0.21 -1.70 16 5 H 0.06 0.65 7.97 -51.92 -0.41 0.23 16 6 C 0.07 0.57 7.23 -3.96 -0.03 0.54 16 7 N -0.68 -5.89 7.57 -111.80 -0.85 -6.73 16 8 C 0.06 0.52 7.33 -2.84 -0.02 0.49 16 9 C -0.12 -1.21 3.13 -89.43 -0.28 -1.49 16 10 H 0.10 1.09 7.19 -51.93 -0.37 0.71 16 11 C 0.06 0.69 5.55 -2.85 -0.02 0.67 16 12 N -0.52 -6.77 4.96 -224.53 -1.11 -7.89 16 13 C 0.05 0.74 4.67 -3.83 -0.02 0.72 16 14 C -0.11 -1.94 5.27 -26.74 -0.14 -2.08 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.45 7.78 -51.93 -0.40 0.04 16 27 H 0.06 0.61 7.07 -51.93 -0.37 0.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.71 7.21 -51.93 -0.37 0.33 16 30 H 0.34 2.36 8.94 -39.29 -0.35 2.01 16 31 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 35 H 0.03 0.42 7.87 -51.93 -0.41 0.02 16 36 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -30.45 331.28 -10.61 -41.06 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.06 Total: -2.72 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.29 Total: -18.96 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -1.22 Total: -41.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.45 -10.61 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385333456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.681 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds