Wall clock time and date at job start Mon Mar 30 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.05343 * 2 1 4 4 C 1.53743 * 110.07586 * 238.44581 * 2 1 3 5 5 H 1.09011 * 112.01089 * 99.83455 * 4 2 1 6 6 C 1.54307 * 109.08567 * 334.18548 * 4 2 1 7 7 N 1.48528 * 104.68416 * 223.57243 * 6 4 2 8 8 C 1.48527 * 104.20942 * 39.67454 * 7 6 4 9 9 C 1.54309 * 104.68731 * 320.32614 * 8 7 6 10 10 H 1.09000 * 112.01779 * 262.06249 * 9 8 7 11 11 C 1.53749 * 109.08951 * 136.41837 * 9 8 7 12 12 N 1.47617 * 110.07300 * 121.49282 * 2 1 3 13 13 C 1.46899 * 111.00400 * 271.36493 * 12 2 1 14 14 C 1.52996 * 109.47325 * 170.00037 * 13 12 2 15 15 C 1.53008 * 109.47159 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47159 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47225 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99918 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99692 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99863 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46691 * 90.00261 * 21 19 17 23 23 H 1.48495 * 109.47011 * 210.00051 * 21 19 17 24 24 H 1.48501 * 109.46990 * 330.00363 * 21 19 17 25 25 H 1.09004 * 109.46853 * 310.59941 * 1 2 3 26 26 H 1.08996 * 109.46577 * 70.59842 * 1 2 3 27 27 H 1.08993 * 109.46789 * 190.60392 * 1 2 3 28 28 H 1.08991 * 110.39678 * 342.37558 * 6 4 2 29 29 H 1.09005 * 110.39452 * 104.77852 * 6 4 2 30 30 H 1.00899 * 110.99492 * 159.22087 * 7 6 4 31 31 H 1.08994 * 110.39447 * 201.52068 * 8 7 6 32 32 H 1.09007 * 110.39132 * 79.12621 * 8 7 6 33 33 H 1.08993 * 110.07309 * 147.35158 * 11 9 8 34 34 H 1.09004 * 110.06797 * 25.81347 * 11 9 8 35 35 H 1.09002 * 109.46788 * 50.00048 * 13 12 2 36 36 H 1.09007 * 109.47363 * 290.00488 * 13 12 2 37 37 H 1.08995 * 109.47457 * 300.00076 * 14 13 12 38 38 H 1.09002 * 109.47179 * 60.00250 * 14 13 12 39 39 H 1.08995 * 109.46954 * 300.00330 * 15 14 13 40 40 H 1.09002 * 109.46915 * 60.00035 * 15 14 13 41 41 H 1.09007 * 109.47268 * 300.00455 * 16 15 14 42 42 H 1.09002 * 109.47179 * 60.00196 * 16 15 14 43 43 H 0.97009 * 119.99765 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0578 -0.7557 -1.2305 5 1 2.3602 -0.0769 -2.0281 6 6 0.9980 -1.7806 -1.6860 7 7 1.7699 -3.0150 -1.9798 8 6 2.7889 -3.0733 -0.9007 9 6 3.2421 -1.6106 -0.7111 10 1 4.1679 -1.3971 -1.2453 11 6 3.3370 -1.3044 0.7926 12 7 2.0367 -0.7243 1.1823 13 6 2.1867 0.1805 2.3297 14 6 2.4702 -0.6378 3.5910 15 6 2.6258 0.3047 4.7862 16 6 2.9099 -0.5137 6.0474 17 6 3.0626 0.4145 7.2247 18 1 2.9670 1.4815 7.0871 19 6 3.3253 -0.0983 8.4773 20 7 3.4580 0.7118 9.5048 21 14 3.4914 -1.9436 8.7151 22 1 4.9097 -2.3412 8.5273 23 1 3.0528 -2.3074 10.0864 24 1 2.6436 -2.6491 7.7207 25 1 -0.3633 0.6688 0.7803 26 1 -0.3632 0.3414 -0.9693 27 1 -0.3632 -1.0101 0.1891 28 1 0.2786 -1.9633 -0.8879 29 1 0.4897 -1.4280 -2.5835 30 1 1.1732 -3.8283 -1.9579 31 1 3.6303 -3.6952 -1.2060 32 1 2.3465 -3.4562 0.0191 33 1 4.1371 -0.5881 0.9788 34 1 3.5192 -2.2230 1.3506 35 1 1.2676 0.7506 2.4654 36 1 3.0152 0.8650 2.1469 37 1 1.6418 -1.3222 3.7739 38 1 3.3893 -1.2079 3.4553 39 1 3.4540 0.9893 4.6036 40 1 1.7065 0.8744 4.9218 41 1 2.0820 -1.1988 6.2302 42 1 3.8294 -1.0831 5.9115 43 1 3.6433 0.3510 10.3861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385333459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:09 Heat of formation + Delta-G solvation = -5.529315 kcal Electronic energy + Delta-G solvation = -18995.065435 eV Core-core repulsion = 16267.211362 eV Total energy + Delta-G solvation = -2727.854073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60182 -36.66633 -34.60509 -32.80061 -32.22499 -30.78250 -28.28355 -27.57840 -25.23522 -24.54436 -22.47835 -21.36111 -20.15373 -20.01953 -19.19412 -16.78132 -16.61872 -16.34501 -15.35929 -14.79512 -14.45650 -14.33902 -14.20626 -14.02096 -12.81304 -12.79185 -12.61697 -12.53343 -12.35371 -12.22718 -12.02787 -11.65601 -11.53404 -11.22629 -11.10117 -10.95051 -10.73840 -10.73551 -10.67874 -10.42562 -9.85455 -9.65881 -9.45962 -9.13068 -8.76241 -8.51071 -8.43133 -6.01764 -3.99232 3.32591 3.39752 3.44559 3.88064 3.98186 4.24224 4.39954 4.47935 4.61534 4.91207 4.98533 5.14036 5.16731 5.23109 5.29530 5.33056 5.38193 5.51521 5.56735 5.60208 5.62003 5.65637 5.70395 5.82246 5.83539 5.88824 5.98100 6.03874 6.14789 6.16368 6.40799 6.47884 6.66876 6.79109 6.92531 6.96131 7.04119 7.14044 7.36225 7.49452 7.83614 8.57650 9.03555 9.61340 11.11895 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036849 B = 0.003847 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.672870 B = 7276.146443 C = 7659.751674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.050 0.950 4 C -0.091 4.091 5 H 0.087 0.913 6 C 0.036 3.964 7 N -0.671 5.671 8 C 0.044 3.956 9 C -0.097 4.097 10 H 0.088 0.912 11 C 0.043 3.957 12 N -0.515 5.515 13 C 0.051 3.949 14 C -0.113 4.113 15 C -0.102 4.102 16 C -0.013 4.013 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.335 0.665 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.009 0.991 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -5.325 -23.926 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 H 0.069 0.931 4 C -0.111 4.111 5 H 0.105 0.895 6 C -0.093 4.093 7 N -0.299 5.299 8 C -0.085 4.085 9 C -0.117 4.117 10 H 0.107 0.893 11 C -0.085 4.085 12 N -0.240 5.240 13 C -0.077 4.077 14 C -0.151 4.151 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.558 4.558 18 H 0.088 0.912 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.802 -5.459 -24.123 25.024 hybrid contribution 0.254 -0.457 0.943 1.078 sum -3.548 -5.916 -23.181 24.186 Atomic orbital electron populations 1.21880 0.94021 1.02510 1.01236 1.22317 0.96254 0.96026 0.89673 0.93144 1.22563 0.94972 0.96636 0.96916 0.89471 1.23204 0.95597 0.90390 1.00091 1.63707 1.15555 1.05131 1.45541 1.22987 0.95851 0.96231 0.93472 1.22581 0.98528 0.95071 0.95499 0.89342 1.22861 0.91049 1.00406 0.94159 1.64175 1.23545 1.31829 1.04414 1.22385 1.00548 0.94046 0.90729 1.21637 1.01396 0.98681 0.93385 1.21428 1.00708 0.97742 0.94099 1.19559 0.95926 0.96078 0.93500 1.21195 1.48321 0.94897 0.91356 0.91151 1.25052 0.94749 0.97841 0.96000 1.69925 1.49804 1.34820 0.99966 0.86759 0.78762 0.86341 0.77323 1.20349 1.21424 1.18987 0.92689 0.92354 0.91280 0.91900 0.90756 0.85046 0.90575 0.93118 0.93682 0.89899 0.90920 0.94761 0.91811 0.92751 0.93136 0.92880 0.96688 0.97247 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.29 37.16 0.31 -0.99 16 2 C 0.07 0.69 2.82 -66.93 -0.19 0.50 16 3 H 0.05 0.54 7.87 -51.92 -0.41 0.13 16 4 C -0.09 -0.86 3.98 -88.48 -0.35 -1.21 16 5 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 6 C 0.04 0.32 6.03 -2.24 -0.01 0.31 16 7 N -0.67 -6.16 7.62 -109.79 -0.84 -7.00 16 8 C 0.04 0.41 6.90 -2.24 -0.02 0.40 16 9 C -0.10 -0.95 4.08 -88.48 -0.36 -1.31 16 10 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 11 C 0.04 0.49 5.17 -3.04 -0.02 0.48 16 12 N -0.52 -6.29 4.89 -224.51 -1.10 -7.39 16 13 C 0.05 0.70 4.70 -3.83 -0.02 0.68 16 14 C -0.11 -1.85 5.29 -26.73 -0.14 -1.99 16 15 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 16 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 17 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 21 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 25 H 0.05 0.54 7.94 -51.93 -0.41 0.13 16 26 H 0.06 0.45 7.91 -51.93 -0.41 0.04 16 27 H 0.07 0.68 6.16 -51.93 -0.32 0.36 16 28 H 0.06 0.58 5.20 -51.93 -0.27 0.31 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.33 2.61 8.92 -39.29 -0.35 2.26 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.52 7.53 -51.93 -0.39 0.13 16 33 H 0.04 0.52 7.63 -51.93 -0.40 0.13 16 34 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 35 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 36 H 0.03 0.47 7.77 -51.93 -0.40 0.07 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.88 7.51 -51.93 -0.39 0.49 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.01 0.37 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -30.92 324.07 -10.28 -41.20 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.86 Total: -2.07 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.48 Total: -19.46 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -1.16 Total: -42.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.92 -10.28 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385333459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.675 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds