Wall clock time and date at job start Mon Mar 30 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.32918 * 2 1 4 4 C 1.54902 * 110.37672 * 122.25501 * 2 1 3 5 5 C 1.55428 * 101.52189 * 155.94926 * 4 2 1 6 6 H 1.09008 * 110.84360 * 82.83019 * 5 4 2 7 7 C 1.52992 * 110.69609 * 205.97610 * 5 4 2 8 8 N 1.46904 * 109.47618 * 178.77325 * 7 5 4 9 9 C 1.46891 * 111.00359 * 185.22457 * 8 7 5 10 10 C 1.53003 * 109.47338 * 183.16656 * 9 8 7 11 11 C 1.50697 * 115.55096 * 64.80969 * 10 9 8 12 12 H 1.08002 * 120.00059 * 266.80124 * 11 10 9 13 13 C 1.37875 * 120.00026 * 86.80215 * 11 10 9 14 14 N 1.31513 * 119.99846 * 178.71726 * 13 11 10 15 15 Si 1.86803 * 120.00016 * 358.71142 * 13 11 10 16 16 H 1.48494 * 109.47150 * 91.28901 * 15 13 11 17 17 H 1.48495 * 109.47135 * 211.29212 * 15 13 11 18 18 H 1.48501 * 109.47106 * 331.28612 * 15 13 11 19 19 C 1.53010 * 117.49624 * 279.14008 * 10 9 8 20 20 C 1.53002 * 117.50044 * 210.48307 * 10 9 8 21 21 C 1.54323 * 103.04656 * 324.37064 * 5 4 2 22 22 N 1.47442 * 107.23162 * 22.28088 * 21 5 4 23 23 C 1.46898 * 110.99823 * 123.26256 * 22 21 5 24 24 H 1.08996 * 109.47147 * 179.29491 * 1 2 3 25 25 H 1.09008 * 109.46924 * 299.29580 * 1 2 3 26 26 H 1.09001 * 109.47236 * 59.29651 * 1 2 3 27 27 H 1.08995 * 110.99246 * 274.10136 * 4 2 1 28 28 H 1.09006 * 110.98981 * 37.92155 * 4 2 1 29 29 H 1.09003 * 109.47105 * 298.76942 * 7 5 4 30 30 H 1.09000 * 109.47137 * 58.77248 * 7 5 4 31 31 H 1.00898 * 111.00064 * 61.26510 * 8 7 5 32 32 H 1.09005 * 109.46953 * 303.16514 * 9 8 7 33 33 H 1.09000 * 109.47701 * 63.16379 * 9 8 7 34 34 H 0.97004 * 119.99479 * 180.02562 * 14 13 11 35 35 H 1.08994 * 117.49459 * 0.02562 * 19 10 9 36 36 H 1.09001 * 117.49376 * 145.01818 * 19 10 9 37 37 H 1.08999 * 117.50014 * 214.97764 * 20 10 9 38 38 H 1.09002 * 117.49763 * 359.97365 * 20 10 9 39 39 H 1.08996 * 109.88259 * 262.87557 * 21 5 4 40 40 H 1.09003 * 110.02223 * 141.76682 * 21 5 4 41 41 H 1.09010 * 109.47227 * 299.15271 * 23 22 21 42 42 H 1.09002 * 109.47266 * 59.15317 * 23 22 21 43 43 H 1.09003 * 109.47088 * 179.15900 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0694 -0.7750 1.2280 5 6 3.4812 -1.1967 0.7334 6 1 4.1980 -0.3870 0.8701 7 6 3.9518 -2.4608 1.4554 8 7 5.2736 -2.8516 0.9475 9 6 5.7039 -4.1303 1.5285 10 6 7.1143 -4.4644 1.0382 11 6 8.1989 -3.5185 1.4853 12 1 8.4818 -2.6861 0.8580 13 6 8.8300 -3.7157 2.6951 14 7 9.7938 -2.9050 3.0738 15 14 8.3160 -5.1343 3.7965 16 1 9.1422 -6.3280 3.4840 17 1 8.5136 -4.7540 5.2182 18 1 6.8836 -5.4486 3.5627 19 6 7.2496 -5.0878 -0.3525 20 6 7.4810 -5.9430 0.8958 21 6 3.2551 -1.4776 -0.7672 22 7 2.0447 -0.7395 -1.1721 23 6 2.3331 0.1739 -2.2859 24 1 -0.3633 -1.0275 -0.0126 25 1 -0.3633 0.5029 0.8963 26 1 -0.3634 0.5247 -0.8836 27 1 2.1371 -0.1255 2.1007 28 1 1.4527 -1.6485 1.4401 29 1 4.0173 -2.2648 2.5257 30 1 3.2408 -3.2674 1.2766 31 1 5.9557 -2.1283 1.1200 32 1 5.7060 -4.0530 2.6158 33 1 5.0164 -4.9185 1.2216 34 1 10.2381 -3.0441 3.9249 35 1 6.3339 -5.2594 -0.9183 36 1 8.1233 -4.8139 -0.9439 37 1 8.5068 -6.2315 1.1251 38 1 6.7176 -6.6777 1.1517 39 1 3.1086 -2.5459 -0.9264 40 1 4.1118 -1.1308 -1.3450 41 1 3.0832 0.9011 -1.9745 42 1 2.7103 -0.3961 -3.1350 43 1 1.4201 0.6947 -2.5745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396654155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:05 Heat of formation + Delta-G solvation = 21.704379 kcal Electronic energy + Delta-G solvation = -19112.250691 eV Core-core repulsion = 16385.577560 eV Total energy + Delta-G solvation = -2726.673132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.32675 -37.28370 -34.84434 -32.10217 -32.01618 -31.25936 -26.91340 -26.07250 -25.51524 -24.13945 -22.58624 -21.45001 -20.54816 -19.67299 -18.82001 -16.42039 -16.19718 -15.13469 -15.01988 -14.75554 -14.38450 -14.01273 -13.80951 -13.47134 -13.30306 -12.74612 -12.66964 -12.47149 -12.28422 -12.07720 -11.78948 -11.46848 -11.26931 -11.13380 -11.02341 -10.86731 -10.61491 -10.54793 -10.50204 -10.34441 -9.96715 -9.48365 -8.95280 -8.59531 -8.42607 -8.30050 -7.62938 -6.11309 -4.13967 3.28908 3.37940 3.43455 3.98778 4.42518 4.46324 4.65036 4.87611 4.96715 5.18566 5.20524 5.29293 5.35556 5.39728 5.44986 5.46499 5.59809 5.74492 5.79618 5.81935 5.84595 5.86845 5.92364 5.99422 6.10243 6.20960 6.22298 6.23834 6.29866 6.46849 6.52054 6.54084 6.59003 6.84714 7.02464 7.12221 7.14767 7.23560 7.77695 7.81449 8.17146 8.52876 8.93175 9.53135 11.00393 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.004707 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.655820 B = 5947.005820 C = 6157.607922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.051 0.949 4 C -0.120 4.120 5 C -0.103 4.103 6 H 0.073 0.927 7 C 0.069 3.931 8 N -0.679 5.679 9 C 0.099 3.901 10 C 0.004 3.996 11 C -0.486 4.486 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.900 5.900 15 Si 0.880 3.120 16 H -0.279 1.279 17 H -0.296 1.296 18 H -0.258 1.258 19 C -0.168 4.168 20 C -0.206 4.206 21 C 0.061 3.939 22 N -0.536 5.536 23 C 0.022 3.978 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.352 0.648 32 H 0.024 0.976 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.067 0.933 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 4.084 -4.902 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.069 0.931 4 C -0.159 4.159 5 C -0.123 4.123 6 H 0.092 0.908 7 C -0.061 4.061 8 N -0.311 5.311 9 C -0.030 4.030 10 C 0.003 3.997 11 C -0.523 4.523 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.537 5.537 15 Si 0.708 3.292 16 H -0.205 1.205 17 H -0.223 1.223 18 H -0.183 1.183 19 C -0.205 4.205 20 C -0.244 4.244 21 C -0.067 4.067 22 N -0.260 5.260 23 C -0.127 4.127 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.612 3.496 -5.516 17.850 hybrid contribution 0.816 0.080 1.853 2.026 sum -15.796 3.576 -3.663 16.605 Atomic orbital electron populations 1.21683 0.94252 1.02270 1.00880 1.22561 0.95776 0.95892 0.90052 0.93078 1.22838 0.96011 1.00155 0.96851 1.22394 0.96071 0.98112 0.95729 0.90829 1.21870 0.92922 0.95667 0.95653 1.60414 1.03160 1.06320 1.61166 1.21619 0.95323 0.90320 0.95758 1.19362 0.93409 0.91038 0.95908 1.20312 1.16377 1.11563 1.04070 0.90445 1.24994 0.94205 0.95920 0.97475 1.69906 1.23764 1.37959 1.22109 0.86850 0.80320 0.82961 0.79096 1.20499 1.22346 1.18267 1.22685 1.00965 1.05604 0.91260 1.22979 1.00936 0.95482 1.05014 1.22733 0.90137 0.99622 0.94159 1.63564 1.29833 1.25777 1.06830 1.22507 0.99988 0.95496 0.94722 0.91982 0.92657 0.93018 0.91098 0.90545 0.95849 0.91612 0.82802 0.95739 0.93712 0.92668 0.90870 0.90013 0.89715 0.91272 0.89961 0.92421 0.95644 0.91411 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.59 37.16 0.36 -0.89 16 2 C 0.07 0.72 3.04 -66.19 -0.20 0.51 16 3 H 0.05 0.56 7.77 -51.92 -0.40 0.15 16 4 C -0.12 -1.35 5.96 -24.44 -0.15 -1.50 16 5 C -0.10 -1.38 3.19 -88.64 -0.28 -1.66 16 6 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 7 C 0.07 1.06 5.00 -3.83 -0.02 1.04 16 8 N -0.68 -12.53 6.27 -113.78 -0.71 -13.24 16 9 C 0.10 2.04 5.18 -3.83 -0.02 2.02 16 10 C 0.00 0.09 1.01 -155.65 -0.16 -0.07 16 11 C -0.49 -13.16 8.74 -34.44 -0.30 -13.46 16 12 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 13 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 15 Si 0.88 21.60 24.88 -169.99 -4.23 17.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.03 5.74 56.52 0.32 -5.71 16 19 C -0.17 -3.50 9.96 -26.69 -0.27 -3.77 16 20 C -0.21 -4.45 7.60 -26.69 -0.20 -4.65 16 21 C 0.06 0.82 6.28 -2.83 -0.02 0.80 16 22 N -0.54 -6.56 5.10 -231.60 -1.18 -7.74 16 23 C 0.02 0.23 9.12 60.06 0.55 0.78 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.35 7.09 8.12 -39.29 -0.32 6.77 16 32 H 0.02 0.54 6.65 -51.93 -0.35 0.19 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.08 1.92 7.28 -51.93 -0.38 1.55 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 40 H 0.06 0.82 7.58 -51.93 -0.39 0.42 16 41 H 0.02 0.27 8.09 -51.92 -0.42 -0.15 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -28.32 333.65 -9.33 -37.66 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.20 Total: 5.93 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.81 Total: -18.79 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.12 Total: -47.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.23 Total: 17.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.32 -9.33 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396654155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.360 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds