Wall clock time and date at job start Mon Mar 30 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.28703 * 2 1 4 4 C 1.54383 * 110.32591 * 122.23728 * 2 1 3 5 5 N 1.48554 * 104.59539 * 142.74742 * 4 2 1 6 6 C 1.46904 * 110.99930 * 200.96043 * 5 4 2 7 7 C 1.48563 * 104.22348 * 320.51610 * 5 4 2 8 8 C 1.54259 * 110.32235 * 237.87100 * 2 1 3 9 9 H 1.09000 * 110.32515 * 122.10730 * 8 2 1 10 10 N 1.46900 * 110.32275 * 0.02562 * 8 2 1 11 11 C 1.46907 * 110.99997 * 163.39895 * 10 8 2 12 12 H 1.09002 * 110.43065 * 327.53591 * 11 10 8 13 13 C 1.54258 * 110.48748 * 90.22448 * 11 10 8 14 14 C 1.53877 * 106.60256 * 142.28945 * 13 11 10 15 15 C 1.54275 * 106.59328 * 359.97438 * 14 13 11 16 16 H 1.08993 * 110.48633 * 95.06943 * 15 14 13 17 17 C 1.50701 * 110.59371 * 217.65599 * 15 14 13 18 18 H 1.08000 * 119.99490 * 114.84432 * 17 15 14 19 19 C 1.37872 * 119.99923 * 294.83628 * 17 15 14 20 20 N 1.31522 * 119.99735 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 120.00269 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.46967 * 89.99914 * 21 19 17 23 23 H 1.48499 * 109.46995 * 209.99615 * 21 19 17 24 24 H 1.48497 * 109.46908 * 329.99517 * 21 19 17 25 25 C 1.54892 * 104.19758 * 336.38985 * 15 14 13 26 26 H 1.08998 * 109.47058 * 175.79693 * 1 2 3 27 27 H 1.09000 * 109.46862 * 295.79856 * 1 2 3 28 28 H 1.08995 * 109.46927 * 55.79229 * 1 2 3 29 29 H 1.09001 * 110.40908 * 261.52696 * 4 2 1 30 30 H 1.09004 * 110.40964 * 23.84936 * 4 2 1 31 31 H 1.09004 * 109.47114 * 60.12064 * 6 5 4 32 32 H 1.08997 * 109.47460 * 180.12469 * 6 5 4 33 33 H 1.09000 * 109.46717 * 300.12458 * 6 5 4 34 34 H 1.09001 * 110.40826 * 280.70530 * 7 5 4 35 35 H 1.08997 * 110.41226 * 158.26332 * 7 5 4 36 36 H 1.00896 * 111.00021 * 39.44225 * 10 8 2 37 37 H 1.09005 * 110.03117 * 261.57168 * 13 11 10 38 38 H 1.09000 * 110.03658 * 22.99939 * 13 11 10 39 39 H 1.08998 * 110.03338 * 240.71830 * 14 13 11 40 40 H 1.08997 * 110.03222 * 119.27695 * 14 13 11 41 41 H 0.96994 * 120.00146 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.75186 * 279.63176 * 25 15 14 43 43 H 1.08996 * 110.75488 * 156.25406 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7722 1.2245 5 7 3.2693 -1.4835 0.7210 6 6 3.6068 -2.6233 1.5843 7 6 2.8806 -1.9416 -0.6377 8 6 2.0657 -0.7693 -1.2250 9 1 2.7067 -0.1246 -1.8264 10 7 0.9511 -1.2777 -2.0357 11 6 1.4079 -1.6586 -3.3790 12 1 2.2278 -1.0153 -3.6987 13 6 1.8389 -3.1395 -3.4030 14 6 1.3858 -3.7073 -4.7595 15 6 0.6947 -2.5516 -5.5122 16 1 1.4000 -2.0540 -6.1777 17 6 -0.4926 -3.0597 -6.2888 18 1 -1.4890 -2.7383 -6.0236 19 6 -0.3069 -3.9349 -7.3378 20 7 -1.3431 -4.3780 -8.0159 21 14 1.4164 -4.4913 -7.7962 22 1 1.7584 -5.7201 -7.0357 23 1 1.4730 -4.7783 -9.2520 24 1 2.3875 -3.4178 -7.4651 25 6 0.2361 -1.5877 -4.3898 26 1 -0.3633 -1.0249 -0.0753 27 1 -0.3633 0.4473 0.9252 28 1 -0.3633 0.5777 -0.8499 29 1 2.3394 -0.0798 2.0208 30 1 1.3221 -1.4849 1.5802 31 1 2.7718 -3.3236 1.6044 32 1 4.4924 -3.1249 1.1942 33 1 3.8066 -2.2669 2.5949 34 1 2.2647 -2.8388 -0.5746 35 1 3.7670 -2.1297 -1.2435 36 1 0.2032 -0.6024 -2.0860 37 1 2.9224 -3.2147 -3.3099 38 1 1.3555 -3.6823 -2.5907 39 1 0.6824 -4.5256 -4.6056 40 1 2.2493 -4.0579 -5.3247 41 1 -1.2125 -4.9940 -8.7536 42 1 -0.6896 -1.9385 -3.9338 43 1 0.1189 -0.5747 -4.7746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:31 Heat of formation + Delta-G solvation = 1.431170 kcal Electronic energy + Delta-G solvation = -19519.333130 eV Core-core repulsion = 16791.780886 eV Total energy + Delta-G solvation = -2727.552244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67426 -37.53284 -34.64541 -32.70620 -31.60890 -29.01375 -28.35181 -27.28210 -26.02723 -24.14896 -23.29611 -21.17908 -19.65069 -19.64220 -18.89455 -16.73808 -16.24082 -15.57124 -15.37856 -14.85165 -14.61890 -14.44488 -14.05753 -13.46261 -12.91166 -12.79788 -12.55182 -12.47147 -12.35888 -12.09904 -11.62635 -11.48570 -11.32973 -11.17446 -10.93976 -10.82278 -10.68038 -10.40021 -10.28622 -9.99391 -9.91494 -9.63461 -9.32957 -8.92473 -8.62323 -8.50875 -8.18512 -6.03187 -4.01341 3.32281 3.40394 3.42750 3.85691 4.46307 4.48223 4.49620 4.56235 4.91031 5.14172 5.24414 5.29330 5.34175 5.41054 5.42048 5.44904 5.53651 5.57485 5.65662 5.70254 5.76849 5.78940 5.92835 5.99887 6.02661 6.11408 6.26374 6.36992 6.44630 6.53731 6.61486 6.70950 6.74765 6.86619 6.89964 7.00474 7.20371 7.44945 7.60930 7.65526 7.84434 8.58094 9.00991 9.60349 11.10293 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036241 B = 0.004954 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.415955 B = 5650.803977 C = 6146.995604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.040 3.960 5 N -0.521 5.521 6 C 0.015 3.985 7 C 0.043 3.957 8 C 0.085 3.915 9 H 0.049 0.951 10 N -0.677 5.677 11 C 0.076 3.924 12 H 0.042 0.958 13 C -0.106 4.106 14 C -0.130 4.130 15 C 0.014 3.986 16 H 0.029 0.971 17 C -0.507 4.507 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.905 5.905 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.265 1.265 25 C -0.106 4.106 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.345 0.655 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.262 0.738 42 H 0.071 0.929 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 6.995 17.720 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.089 4.089 5 N -0.244 5.244 6 C -0.134 4.134 7 C -0.085 4.085 8 C -0.026 4.026 9 H 0.067 0.933 10 N -0.311 5.311 11 C -0.033 4.033 12 H 0.060 0.940 13 C -0.144 4.144 14 C -0.168 4.168 15 C -0.006 4.006 16 H 0.047 0.953 17 C -0.545 4.545 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.543 5.543 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.190 1.190 25 C -0.144 4.144 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.360 6.580 17.815 20.750 hybrid contribution 0.446 -0.199 -0.724 0.873 sum 8.806 6.382 17.091 20.258 Atomic orbital electron populations 1.21770 0.94157 1.03226 1.01114 1.22002 0.96286 0.99061 0.94204 0.90578 1.23145 0.91256 0.97331 0.97124 1.65354 1.33190 1.23064 1.02823 1.22482 1.00687 0.92660 0.97582 1.23200 0.98454 0.97391 0.89457 1.22245 0.92262 0.94245 0.93840 0.93305 1.60819 1.09810 1.46217 1.14287 1.22588 0.97329 0.96363 0.87057 0.93980 1.22151 0.98528 0.95092 0.98653 1.22603 0.98977 1.00730 0.94520 1.19890 0.96010 0.91837 0.92822 0.95292 1.21044 0.93276 1.26503 1.13652 0.90922 1.24994 0.96418 0.95857 0.95858 1.69911 1.29771 1.33205 1.21444 0.86900 0.85828 0.79570 0.76922 1.20352 1.22106 1.19017 1.22589 0.96901 0.99174 0.95697 0.90787 0.92903 0.92445 0.90595 0.93444 0.95212 0.91354 0.91564 0.92148 0.90677 0.83358 0.93940 0.91641 0.91491 0.94371 0.92787 0.91054 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.80 37.16 0.29 -1.11 16 2 C -0.10 -1.00 3.65 -89.24 -0.33 -1.33 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.04 0.41 6.04 -2.18 -0.01 0.39 16 5 N -0.52 -5.98 5.66 -238.23 -1.35 -7.33 16 6 C 0.01 0.14 9.53 60.07 0.57 0.72 16 7 C 0.04 0.55 5.24 -2.18 -0.01 0.53 16 8 C 0.08 1.06 3.33 -66.33 -0.22 0.84 16 9 H 0.05 0.65 7.63 -51.93 -0.40 0.25 16 10 N -0.68 -9.40 5.18 -96.55 -0.50 -9.90 16 11 C 0.08 1.25 3.16 -66.04 -0.21 1.04 16 12 H 0.04 0.69 7.55 -51.93 -0.39 0.30 16 13 C -0.11 -1.87 5.59 -25.62 -0.14 -2.01 16 14 C -0.13 -2.80 4.89 -25.61 -0.13 -2.92 16 15 C 0.01 0.32 2.27 -90.11 -0.20 0.12 16 16 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 17 C -0.51 -14.23 8.95 -34.44 -0.31 -14.54 16 18 H 0.07 2.21 8.01 -52.49 -0.42 1.78 16 19 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 21 Si 0.88 22.01 24.89 -169.99 -4.23 17.78 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.27 -6.38 6.41 56.52 0.36 -6.02 16 25 C -0.11 -2.05 5.65 -24.72 -0.14 -2.19 16 26 H 0.07 0.82 7.53 -51.93 -0.39 0.42 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 7.06 -51.93 -0.37 0.17 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16 31 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.83 7.63 -51.93 -0.40 0.44 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.34 4.50 5.81 -39.29 -0.23 4.27 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 39 H 0.07 1.54 7.83 -51.93 -0.41 1.13 16 40 H 0.04 0.82 6.05 -51.93 -0.31 0.50 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -29.52 319.11 -9.31 -38.83 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.88 Total: 1.48 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.94 Total: -18.54 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.07 Total: -44.36 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.23 Total: 17.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.52 -9.31 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.258 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds