Wall clock time and date at job start Mon Mar 30 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.87315 * 2 1 4 4 C 1.55144 * 110.98858 * 236.15980 * 2 1 3 5 5 C 1.54320 * 103.01853 * 206.21321 * 4 2 1 6 6 N 1.47443 * 107.23001 * 22.28554 * 5 4 2 7 7 C 1.46907 * 110.99679 * 123.25556 * 6 5 4 8 8 C 1.52992 * 109.47102 * 69.87269 * 7 6 5 9 9 N 1.46900 * 109.47183 * 179.97438 * 8 7 6 10 10 C 1.47846 * 111.00020 * 290.12614 * 9 8 7 11 11 C 1.54908 * 104.89238 * 213.57993 * 10 9 8 12 12 C 1.55422 * 101.52379 * 37.06612 * 11 10 9 13 13 H 1.09004 * 110.69257 * 82.75585 * 12 11 10 14 14 C 1.50700 * 110.84473 * 205.90691 * 12 11 10 15 15 H 1.08003 * 120.00416 * 113.71309 * 14 12 11 16 16 C 1.37875 * 119.99589 * 293.70752 * 14 12 11 17 17 N 1.31517 * 120.00392 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99961 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47025 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47262 * 120.00220 * 18 16 14 21 21 H 1.48505 * 109.47066 * 240.00064 * 18 16 14 22 22 C 1.47448 * 111.00041 * 169.28484 * 9 8 7 23 23 C 1.47840 * 108.56930 * 0.98752 * 6 5 4 24 24 H 1.09003 * 109.46902 * 182.38486 * 1 2 3 25 25 H 1.08994 * 109.46757 * 302.38507 * 1 2 3 26 26 H 1.08997 * 109.47154 * 62.39042 * 1 2 3 27 27 H 1.09000 * 110.70538 * 87.83260 * 4 2 1 28 28 H 1.08998 * 110.85591 * 324.66978 * 4 2 1 29 29 H 1.08994 * 109.88790 * 262.88047 * 5 4 2 30 30 H 1.09005 * 110.01839 * 141.76497 * 5 4 2 31 31 H 1.08997 * 109.47237 * 309.87166 * 7 6 5 32 32 H 1.09000 * 109.46554 * 189.86982 * 7 6 5 33 33 H 1.09009 * 109.47128 * 60.00227 * 8 7 6 34 34 H 1.09004 * 109.47619 * 299.99935 * 8 7 6 35 35 H 1.09002 * 110.37464 * 332.46590 * 10 9 8 36 36 H 1.08999 * 110.37318 * 94.69366 * 10 9 8 37 37 H 1.08998 * 110.98718 * 155.22204 * 11 10 9 38 38 H 1.08998 * 110.98705 * 279.03118 * 11 10 9 39 39 H 0.96995 * 120.00277 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.88737 * 242.66366 * 22 9 8 41 41 H 1.08997 * 109.88833 * 3.69001 * 22 9 8 42 42 H 1.09005 * 110.37218 * 94.73477 * 23 6 5 43 43 H 1.08997 * 110.37699 * 217.07050 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8066 -1.2031 5 6 3.4697 -1.2699 -0.7016 6 7 3.4322 -1.2411 0.7721 7 6 3.7630 -2.5581 1.3329 8 6 5.2448 -2.8558 1.0956 9 7 5.5757 -4.1724 1.6569 10 6 5.5383 -4.1430 3.1346 11 6 6.6425 -5.1337 3.5806 12 6 7.7386 -4.8803 2.5081 13 1 8.3423 -4.0119 2.7720 14 6 8.6085 -6.0982 2.3324 15 1 8.5930 -6.6430 1.3999 16 6 9.4243 -6.5170 3.3619 17 7 9.4430 -5.8539 4.4976 18 14 10.5033 -8.0262 3.1439 19 1 10.2999 -8.5879 1.7844 20 1 11.9285 -7.6446 3.3133 21 1 10.1397 -9.0457 4.1607 22 6 6.9185 -4.6066 1.2298 23 6 2.0858 -0.8059 1.2004 24 1 -0.3633 -1.0268 0.0428 25 1 -0.3632 0.5504 0.8678 26 1 -0.3633 0.4763 -0.9106 27 1 2.1878 -0.1684 -2.0808 28 1 1.4489 -1.6634 -1.4233 29 1 4.2419 -0.5928 -1.0662 30 1 3.6718 -2.2836 -1.0477 31 1 3.1565 -3.3225 0.8474 32 1 3.5593 -2.5584 2.4037 33 1 5.8514 -2.0913 1.5813 34 1 5.4486 -2.8554 0.0248 35 1 5.7584 -3.1398 3.4999 36 1 4.5643 -4.4725 3.4962 37 1 7.0061 -4.8895 4.5787 38 1 6.2846 -6.1623 3.5379 39 1 10.0166 -6.1487 5.2220 40 1 6.8423 -5.5175 0.6360 41 1 7.3933 -3.8202 0.6430 42 1 1.4537 -1.6707 1.4022 43 1 2.1553 -0.1713 2.0839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692833727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:57 Heat of formation + Delta-G solvation = -4.718435 kcal Electronic energy + Delta-G solvation = -18859.374733 eV Core-core repulsion = 16131.555822 eV Total energy + Delta-G solvation = -2727.818911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.36090 -37.90810 -34.18503 -32.78655 -30.75400 -29.68394 -28.21185 -27.52863 -25.30019 -23.98094 -22.58512 -20.70282 -20.35438 -19.58585 -19.44378 -16.51674 -16.42323 -15.77778 -14.94023 -14.49005 -14.40420 -13.97814 -13.78206 -13.57632 -13.12056 -13.00742 -12.50226 -12.36344 -12.23428 -12.04057 -11.60717 -11.35422 -11.16645 -11.02094 -10.93584 -10.91515 -10.77249 -10.64050 -10.46444 -10.40640 -10.12635 -9.60645 -9.24760 -8.83127 -8.37371 -8.31813 -7.55649 -6.00544 -4.02866 3.30954 3.38940 3.43211 3.86237 4.35445 4.45329 4.52228 4.69740 4.93563 5.10689 5.20338 5.23499 5.28410 5.33046 5.43768 5.46671 5.54820 5.61772 5.70944 5.79981 5.82284 5.89334 5.92943 5.95894 6.02032 6.14343 6.24243 6.26999 6.31565 6.42010 6.62401 6.90497 6.96566 7.08684 7.18737 7.22298 7.62491 7.64309 7.87571 7.92837 8.02520 8.44196 8.99278 9.60988 11.09641 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.064116 B = 0.003528 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.602715 B = 7933.695840 C = 8166.352861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.138 4.138 5 C 0.040 3.960 6 N -0.532 5.532 7 C 0.059 3.941 8 C 0.059 3.941 9 N -0.535 5.535 10 C 0.037 3.963 11 C -0.105 4.105 12 C 0.034 3.966 13 H 0.030 0.970 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.049 3.951 23 C 0.048 3.952 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 10.478 -7.771 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.101 0.899 4 C -0.176 4.176 5 C -0.088 4.088 6 N -0.257 5.257 7 C -0.070 4.070 8 C -0.071 4.071 9 N -0.260 5.260 10 C -0.090 4.090 11 C -0.143 4.143 12 C 0.015 3.985 13 H 0.048 0.952 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.078 4.078 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.339 10.465 -7.602 20.065 hybrid contribution 0.661 -0.808 0.012 1.044 sum -14.677 9.657 -7.591 19.139 Atomic orbital electron populations 1.21716 0.94545 1.01885 1.01774 1.22293 0.95448 0.99710 0.94727 0.89913 1.22858 0.96796 0.99826 0.98161 1.22860 0.96930 1.01118 0.87920 1.63487 1.26853 1.27609 1.07744 1.22219 0.96799 0.88039 0.99908 1.22154 0.94589 0.90781 0.99528 1.63535 1.29503 1.24309 1.08678 1.23143 0.99630 0.98865 0.87393 1.22673 0.94112 0.96941 1.00622 1.19859 0.92429 0.97110 0.89094 0.95171 1.21119 1.22867 1.11025 0.99719 0.92428 1.24990 0.96808 0.96894 0.95319 1.69972 1.39297 1.39610 1.04016 0.86553 0.80287 0.83087 0.78175 1.19742 1.21111 1.21058 1.22971 0.86555 0.98629 0.99606 1.23079 0.88695 0.98254 0.97993 0.92665 0.92450 0.92504 0.90971 0.91526 0.90688 0.92282 0.94106 0.91021 0.94419 0.91793 0.94850 0.92345 0.91313 0.92559 0.93133 0.91382 0.94902 0.93551 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.30 37.16 0.35 -0.67 16 2 C -0.10 -0.90 3.63 -88.48 -0.32 -1.22 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.25 6.41 -24.91 -0.16 -1.41 16 5 C 0.04 0.44 6.21 -2.83 -0.02 0.43 16 6 N -0.53 -6.80 5.16 -231.26 -1.19 -7.99 16 7 C 0.06 0.84 4.59 -3.82 -0.02 0.82 16 8 C 0.06 0.98 4.61 -3.83 -0.02 0.96 16 9 N -0.54 -10.46 5.16 -231.24 -1.19 -11.66 16 10 C 0.04 0.74 5.81 -2.30 -0.01 0.73 16 11 C -0.10 -2.49 5.96 -24.44 -0.15 -2.64 16 12 C 0.03 0.87 2.77 -89.79 -0.25 0.62 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.51 -14.12 8.48 -34.44 -0.29 -14.41 16 15 H 0.06 1.58 7.53 -52.48 -0.40 1.18 16 16 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 17 N -0.89 -25.81 12.49 55.43 0.69 -25.11 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.05 1.08 6.45 -2.83 -0.02 1.06 16 23 C 0.05 0.51 6.15 -2.30 -0.01 0.49 16 24 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 8.04 -51.93 -0.42 0.18 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.70 6.91 -51.93 -0.36 0.34 16 31 H 0.04 0.60 7.96 -51.93 -0.41 0.18 16 32 H 0.07 1.05 7.45 -51.93 -0.39 0.67 16 33 H 0.04 0.67 7.83 -51.92 -0.41 0.27 16 34 H 0.06 1.03 7.01 -51.93 -0.36 0.66 16 35 H 0.03 0.65 7.61 -51.93 -0.40 0.26 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.74 7.77 -51.93 -0.40 1.33 16 38 H 0.06 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.07 1.52 7.63 -51.93 -0.40 1.13 16 41 H 0.03 0.68 7.54 -51.93 -0.39 0.29 16 42 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -28.48 329.96 -10.84 -39.32 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.08 Total: -2.35 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.02 Total: -13.61 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -1.69 Total: -44.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.48 -10.84 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692833727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.604 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds