Wall clock time and date at job start Mon Mar 30 2020 04:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 110.87455 * 2 1 4 4 C 1.55140 * 110.98668 * 236.15286 * 2 1 3 5 5 C 1.54317 * 103.01800 * 206.21803 * 4 2 1 6 6 N 1.47439 * 107.23584 * 22.28734 * 5 4 2 7 7 C 1.46903 * 111.00159 * 123.25408 * 6 5 4 8 8 C 1.52997 * 109.46672 * 69.87683 * 7 6 5 9 9 N 1.46910 * 109.46908 * 179.97438 * 8 7 6 10 10 C 1.48556 * 110.99963 * 290.12831 * 9 8 7 11 11 C 1.54375 * 104.59564 * 200.95913 * 10 9 8 12 12 C 1.54261 * 105.06077 * 23.84935 * 11 10 9 13 13 H 1.08991 * 110.32638 * 241.10784 * 12 11 10 14 14 C 1.50700 * 110.32239 * 118.99798 * 12 11 10 15 15 H 1.08005 * 120.00063 * 277.28244 * 14 12 11 16 16 C 1.37876 * 120.00168 * 97.28167 * 14 12 11 17 17 N 1.31512 * 120.00204 * 180.34428 * 16 14 12 18 18 Si 1.86801 * 119.99738 * 0.34693 * 16 14 12 19 19 H 1.48499 * 109.47170 * 85.11839 * 18 16 14 20 20 H 1.48500 * 109.47365 * 205.11774 * 18 16 14 21 21 H 1.48503 * 109.47366 * 325.11650 * 18 16 14 22 22 C 1.48554 * 110.99963 * 174.70798 * 9 8 7 23 23 C 1.47853 * 108.56575 * 0.99045 * 6 5 4 24 24 H 1.08999 * 109.47370 * 182.39303 * 1 2 3 25 25 H 1.09004 * 109.47137 * 302.39219 * 1 2 3 26 26 H 1.08997 * 109.47257 * 62.38676 * 1 2 3 27 27 H 1.09001 * 110.70075 * 87.83949 * 4 2 1 28 28 H 1.09001 * 110.70928 * 324.60415 * 4 2 1 29 29 H 1.08998 * 109.88968 * 262.87807 * 5 4 2 30 30 H 1.08997 * 109.88769 * 141.69487 * 5 4 2 31 31 H 1.08997 * 109.47150 * 309.87527 * 7 6 5 32 32 H 1.09004 * 109.47299 * 189.87656 * 7 6 5 33 33 H 1.08995 * 109.47171 * 60.00488 * 8 7 6 34 34 H 1.08993 * 109.47568 * 299.99640 * 8 7 6 35 35 H 1.08998 * 110.41666 * 82.17794 * 10 9 8 36 36 H 1.09005 * 110.41106 * 319.73531 * 10 9 8 37 37 H 1.09000 * 110.32340 * 264.96009 * 11 10 9 38 38 H 1.08997 * 110.41420 * 142.79179 * 11 10 9 39 39 H 0.97004 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.41366 * 40.26345 * 22 9 8 41 41 H 1.09002 * 110.41260 * 277.82120 * 22 9 8 42 42 H 1.08997 * 110.37557 * 94.73325 * 23 6 5 43 43 H 1.09001 * 110.37402 * 217.07627 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0856 -0.8068 -1.2030 5 6 3.4695 -1.2701 -0.7014 6 7 3.4321 -1.2413 0.7723 7 6 3.7628 -2.5581 1.3332 8 6 5.2446 -2.8559 1.0958 9 7 5.5755 -4.1726 1.6573 10 6 5.5379 -4.1429 3.1421 11 6 6.3953 -5.3506 3.5772 12 6 7.3407 -5.6201 2.3885 13 1 7.1711 -6.6197 1.9888 14 6 8.7773 -5.4654 2.8168 15 1 9.2273 -4.4842 2.8533 16 6 9.5171 -6.5764 3.1622 17 7 10.7687 -6.4407 3.5425 18 14 8.7417 -8.2743 3.0898 19 1 8.8509 -8.8099 1.7091 20 1 9.4478 -9.1815 4.0299 21 1 7.3100 -8.1814 3.4730 22 6 6.9751 -4.5522 1.3352 23 6 2.0856 -0.8059 1.2006 24 1 -0.3634 -1.0267 0.0429 25 1 -0.3633 0.5506 0.8678 26 1 -0.3633 0.4763 -0.9106 27 1 2.1877 -0.1686 -2.0807 28 1 1.4477 -1.6635 -1.4202 29 1 4.2419 -0.5931 -1.0661 30 1 3.6688 -2.2843 -1.0475 31 1 3.1562 -3.3226 0.8477 32 1 3.5590 -2.5585 2.4040 33 1 5.8511 -2.0915 1.5814 34 1 5.4484 -2.8556 0.0251 35 1 4.5141 -4.2552 3.4989 36 1 5.9716 -3.2149 3.5149 37 1 5.7615 -6.2182 3.7609 38 1 6.9702 -5.1066 4.4705 39 1 11.2892 -7.2224 3.7859 40 1 7.6337 -3.6883 1.4252 41 1 7.0335 -4.9729 0.3313 42 1 1.4535 -1.6707 1.4024 43 1 2.1552 -0.1713 2.0840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692833737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:00 Heat of formation + Delta-G solvation = -2.794962 kcal Electronic energy + Delta-G solvation = -18868.452247 eV Core-core repulsion = 16140.716745 eV Total energy + Delta-G solvation = -2727.735503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42110 -38.06247 -34.29357 -32.76548 -31.17368 -29.79869 -28.33232 -27.80257 -25.42282 -23.87339 -22.67721 -20.79661 -20.54492 -19.85225 -19.07259 -16.94899 -16.50852 -15.95043 -15.03744 -14.76321 -14.32346 -13.92314 -13.85035 -13.59511 -13.36508 -13.14175 -12.75352 -12.44056 -12.34740 -12.27885 -11.70027 -11.46850 -11.24338 -11.11719 -10.98563 -10.93336 -10.81446 -10.71761 -10.46310 -10.32246 -10.21837 -9.71006 -9.53564 -8.93007 -8.53012 -8.38165 -7.89908 -6.06903 -4.05979 3.31256 3.39153 3.43468 3.79696 4.30907 4.44063 4.47569 4.64581 4.83303 5.06401 5.10440 5.16928 5.23768 5.25869 5.36136 5.41959 5.50382 5.55423 5.63311 5.66504 5.75429 5.78207 5.83121 5.85478 5.92608 6.05565 6.13028 6.16573 6.17586 6.26362 6.39609 6.68917 6.81839 6.87707 6.90449 7.01325 7.14038 7.40005 7.42876 7.68044 7.85595 8.54557 8.97061 9.56218 11.06253 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.055152 B = 0.003684 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.570587 B = 7598.694826 C = 7684.013248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.138 4.138 5 C 0.039 3.961 6 N -0.532 5.532 7 C 0.058 3.942 8 C 0.051 3.949 9 N -0.521 5.521 10 C 0.038 3.962 11 C -0.125 4.125 12 C 0.015 3.985 13 H 0.037 0.963 14 C -0.509 4.509 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.047 3.953 23 C 0.047 3.953 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.264 0.736 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 10.570 -6.923 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.101 0.899 4 C -0.177 4.177 5 C -0.088 4.088 6 N -0.257 5.257 7 C -0.070 4.070 8 C -0.078 4.078 9 N -0.246 5.246 10 C -0.090 4.090 11 C -0.163 4.163 12 C -0.005 4.005 13 H 0.055 0.945 14 C -0.547 4.547 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.080 4.080 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.936 10.432 -6.898 22.693 hybrid contribution -0.251 -0.908 0.036 0.943 sum -19.186 9.524 -6.862 22.493 Atomic orbital electron populations 1.21717 0.94526 1.01880 1.01810 1.22295 0.95466 0.99730 0.94696 0.89883 1.22865 0.96764 0.99836 0.98203 1.22866 0.96999 1.01131 0.87847 1.63492 1.26906 1.27447 1.07806 1.22203 0.96637 0.88226 0.99909 1.22131 0.94792 0.90852 1.00045 1.65337 1.25535 1.24898 1.08795 1.23054 0.99093 0.98653 0.88216 1.22712 0.97121 0.95493 1.00990 1.19821 0.95304 0.94430 0.90921 0.94462 1.21045 0.93663 0.95298 1.44725 0.91017 1.25074 0.94585 0.99088 0.94438 1.69906 1.08218 1.30314 1.45568 0.86804 0.79985 0.84292 0.78120 1.20228 1.21703 1.18890 1.23200 0.85996 0.98973 0.99829 1.23086 0.88650 0.98262 0.98038 0.92676 0.92441 0.92475 0.90905 0.91527 0.90592 0.92283 0.94072 0.91021 0.94133 0.91484 0.91984 0.94426 0.93617 0.91230 0.92662 0.93946 0.91780 0.93557 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.30 37.16 0.35 -0.62 16 2 C -0.10 -0.86 3.63 -88.48 -0.32 -1.18 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.19 6.41 -24.91 -0.16 -1.35 16 5 C 0.04 0.42 6.21 -2.84 -0.02 0.40 16 6 N -0.53 -6.45 5.16 -231.25 -1.19 -7.65 16 7 C 0.06 0.79 4.59 -3.82 -0.02 0.77 16 8 C 0.05 0.80 4.84 -3.82 -0.02 0.78 16 9 N -0.52 -9.58 5.37 -229.98 -1.24 -10.82 16 10 C 0.04 0.69 5.74 -2.19 -0.01 0.68 16 11 C -0.12 -2.66 6.64 -25.35 -0.17 -2.83 16 12 C 0.01 0.35 2.58 -90.39 -0.23 0.12 16 13 H 0.04 0.91 5.56 -51.93 -0.29 0.62 16 14 C -0.51 -14.26 8.63 -34.44 -0.30 -14.56 16 15 H 0.07 2.19 7.93 -52.48 -0.42 1.77 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 18 Si 0.88 21.74 26.91 -169.99 -4.57 17.16 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.29 6.97 56.52 0.39 -5.89 16 22 C 0.05 0.99 6.02 -2.18 -0.01 0.98 16 23 C 0.05 0.48 6.15 -2.29 -0.01 0.46 16 24 H 0.05 0.38 8.10 -51.93 -0.42 -0.04 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.66 6.91 -51.93 -0.36 0.31 16 31 H 0.04 0.57 7.96 -51.93 -0.41 0.15 16 32 H 0.07 0.98 7.18 -51.93 -0.37 0.61 16 33 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 34 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 35 H 0.06 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.04 0.69 7.82 -51.93 -0.41 0.29 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.56 7.70 -51.93 -0.40 1.16 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.04 0.93 7.63 -51.93 -0.40 0.53 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -29.52 327.52 -10.31 -39.84 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.00 Total: -2.20 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.03 Total: -14.44 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -1.65 Total: -45.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.57 Total: 17.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.52 -10.31 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692833737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.043 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds