Wall clock time and date at job start Mon Mar 30 2020 04:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 110.87455 * 2 1 4 4 C 1.55140 * 110.98668 * 236.15286 * 2 1 3 5 5 C 1.54317 * 103.01800 * 206.21803 * 4 2 1 6 6 N 1.47439 * 107.23584 * 22.28734 * 5 4 2 7 7 C 1.46903 * 111.00159 * 123.25408 * 6 5 4 8 8 C 1.52997 * 109.46672 * 69.87683 * 7 6 5 9 9 N 1.46910 * 109.46908 * 179.97438 * 8 7 6 10 10 C 1.48556 * 110.99963 * 290.12831 * 9 8 7 11 11 C 1.54375 * 104.59564 * 200.95913 * 10 9 8 12 12 C 1.54261 * 105.06077 * 23.84935 * 11 10 9 13 13 H 1.08991 * 110.32638 * 241.10784 * 12 11 10 14 14 C 1.50700 * 110.32239 * 118.99798 * 12 11 10 15 15 H 1.08005 * 120.00063 * 277.28244 * 14 12 11 16 16 C 1.37876 * 120.00168 * 97.28167 * 14 12 11 17 17 N 1.31512 * 120.00204 * 180.34428 * 16 14 12 18 18 Si 1.86801 * 119.99738 * 0.34693 * 16 14 12 19 19 H 1.48499 * 109.47170 * 85.11839 * 18 16 14 20 20 H 1.48500 * 109.47365 * 205.11774 * 18 16 14 21 21 H 1.48503 * 109.47366 * 325.11650 * 18 16 14 22 22 C 1.48554 * 110.99963 * 174.70798 * 9 8 7 23 23 C 1.47853 * 108.56575 * 0.99045 * 6 5 4 24 24 H 1.08999 * 109.47370 * 182.39303 * 1 2 3 25 25 H 1.09004 * 109.47137 * 302.39219 * 1 2 3 26 26 H 1.08997 * 109.47257 * 62.38676 * 1 2 3 27 27 H 1.09001 * 110.70075 * 87.83949 * 4 2 1 28 28 H 1.09001 * 110.70928 * 324.60415 * 4 2 1 29 29 H 1.08998 * 109.88968 * 262.87807 * 5 4 2 30 30 H 1.08997 * 109.88769 * 141.69487 * 5 4 2 31 31 H 1.08997 * 109.47150 * 309.87527 * 7 6 5 32 32 H 1.09004 * 109.47299 * 189.87656 * 7 6 5 33 33 H 1.08995 * 109.47171 * 60.00488 * 8 7 6 34 34 H 1.08993 * 109.47568 * 299.99640 * 8 7 6 35 35 H 1.08998 * 110.41666 * 82.17794 * 10 9 8 36 36 H 1.09005 * 110.41106 * 319.73531 * 10 9 8 37 37 H 1.09000 * 110.32340 * 264.96009 * 11 10 9 38 38 H 1.08997 * 110.41420 * 142.79179 * 11 10 9 39 39 H 0.97004 * 120.00081 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.41366 * 40.26345 * 22 9 8 41 41 H 1.09002 * 110.41260 * 277.82120 * 22 9 8 42 42 H 1.08997 * 110.37557 * 94.73325 * 23 6 5 43 43 H 1.09001 * 110.37402 * 217.07627 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0856 -0.8068 -1.2030 5 6 3.4695 -1.2701 -0.7014 6 7 3.4321 -1.2413 0.7723 7 6 3.7628 -2.5581 1.3332 8 6 5.2446 -2.8559 1.0958 9 7 5.5755 -4.1726 1.6573 10 6 5.5379 -4.1429 3.1421 11 6 6.3953 -5.3506 3.5772 12 6 7.3407 -5.6201 2.3885 13 1 7.1711 -6.6197 1.9888 14 6 8.7773 -5.4654 2.8168 15 1 9.2273 -4.4842 2.8533 16 6 9.5171 -6.5764 3.1622 17 7 10.7687 -6.4407 3.5425 18 14 8.7417 -8.2743 3.0898 19 1 8.8509 -8.8099 1.7091 20 1 9.4478 -9.1815 4.0299 21 1 7.3100 -8.1814 3.4730 22 6 6.9751 -4.5522 1.3352 23 6 2.0856 -0.8059 1.2006 24 1 -0.3634 -1.0267 0.0429 25 1 -0.3633 0.5506 0.8678 26 1 -0.3633 0.4763 -0.9106 27 1 2.1877 -0.1686 -2.0807 28 1 1.4477 -1.6635 -1.4202 29 1 4.2419 -0.5931 -1.0661 30 1 3.6688 -2.2843 -1.0475 31 1 3.1562 -3.3226 0.8477 32 1 3.5590 -2.5585 2.4040 33 1 5.8511 -2.0915 1.5814 34 1 5.4484 -2.8556 0.0251 35 1 4.5141 -4.2552 3.4989 36 1 5.9716 -3.2149 3.5149 37 1 5.7615 -6.2182 3.7609 38 1 6.9702 -5.1066 4.4705 39 1 11.2892 -7.2224 3.7859 40 1 7.6337 -3.6883 1.4252 41 1 7.0335 -4.9729 0.3313 42 1 1.4535 -1.6707 1.4024 43 1 2.1552 -0.1713 2.0840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692833737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:59 Heat of formation + Delta-G solvation = -22.791639 kcal Electronic energy + Delta-G solvation = -18869.319368 eV Core-core repulsion = 16140.716745 eV Total energy + Delta-G solvation = -2728.602624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39691 -39.50720 -35.61034 -34.45978 -32.71236 -30.62412 -30.05172 -29.00932 -26.56238 -25.45730 -23.89376 -21.96555 -21.53729 -21.10700 -20.67720 -19.05684 -17.32036 -17.17723 -16.51665 -16.36912 -15.51772 -15.42065 -14.97074 -14.77227 -14.56788 -14.34385 -14.02068 -13.75648 -13.53882 -13.20991 -13.07157 -12.92910 -12.64168 -12.52210 -12.21088 -12.09284 -12.01994 -11.85986 -11.77755 -11.68036 -11.48458 -11.47960 -11.32286 -10.93538 -10.70549 -9.45242 -9.27577 -8.29409 -6.33364 1.36727 1.38136 1.50349 2.36118 2.76633 3.05819 3.40123 3.63904 3.75274 3.95626 3.98556 3.99880 4.20197 4.30712 4.35006 4.45559 4.51072 4.52971 4.59286 4.61452 4.73551 4.76400 4.81877 4.85982 4.87564 4.93170 4.98137 5.00876 5.08857 5.12093 5.19072 5.22395 5.29424 5.35190 5.46420 5.51340 5.65518 5.91753 5.99534 6.07288 6.23594 6.33804 6.72808 7.32032 8.87496 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.055152 B = 0.003684 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.570587 B = 7598.694826 C = 7684.013248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.036 3.964 6 N -0.546 5.546 7 C 0.071 3.929 8 C 0.055 3.945 9 N -0.515 5.515 10 C 0.045 3.955 11 C -0.123 4.123 12 C 0.008 3.992 13 H 0.039 0.961 14 C -0.512 4.512 15 H 0.027 0.973 16 C 0.010 3.990 17 N -0.952 5.952 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.245 1.245 22 C 0.054 3.946 23 C 0.045 3.955 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.266 0.734 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.103 10.241 -7.654 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.171 4.171 5 C -0.092 4.092 6 N -0.271 5.271 7 C -0.058 4.058 8 C -0.073 4.073 9 N -0.240 5.240 10 C -0.083 4.083 11 C -0.162 4.162 12 C -0.012 4.012 13 H 0.057 0.943 14 C -0.550 4.550 15 H 0.046 0.954 16 C -0.187 4.187 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.169 1.169 22 C -0.074 4.074 23 C -0.083 4.083 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.964 10.127 -7.638 25.363 hybrid contribution 0.734 -0.681 0.255 1.033 sum -21.230 9.446 -7.383 24.381 Atomic orbital electron populations 1.21687 0.93161 1.02068 1.02609 1.22281 0.96512 0.99305 0.93614 0.89891 1.22843 0.95380 1.00181 0.98713 1.22901 0.98371 1.00801 0.87134 1.63463 1.28448 1.26460 1.08708 1.22004 0.94631 0.89121 1.00009 1.22141 0.96325 0.88957 0.99926 1.65355 1.23172 1.26596 1.08847 1.23028 1.00130 0.96995 0.88113 1.22586 0.96994 0.97481 0.99126 1.19821 0.93142 0.95407 0.92786 0.94303 1.21259 0.95991 0.93466 1.44324 0.95420 1.25977 0.94950 1.03627 0.94123 1.70057 1.10051 1.31688 1.47396 0.85719 0.79867 0.78664 0.78571 1.19156 1.21474 1.16869 1.23004 0.87396 0.97558 0.99484 1.23155 0.87695 0.98569 0.98850 0.92756 0.91863 0.91528 0.89614 0.91221 0.90847 0.92940 0.94001 0.91032 0.95453 0.91043 0.88920 0.94935 0.92083 0.93038 0.92505 0.95841 0.90818 0.93344 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.30 71.98 0.67 -0.85 16 2 C -0.10 -1.41 3.63 -9.41 -0.03 -1.45 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.13 -1.99 6.41 31.77 0.20 -1.78 16 5 C 0.04 0.70 6.21 86.65 0.54 1.24 16 6 N -0.55 -12.34 5.16 -885.53 -4.57 -16.91 16 7 C 0.07 1.78 4.59 86.30 0.40 2.17 16 8 C 0.06 1.67 4.84 86.30 0.42 2.09 16 9 N -0.52 -18.10 5.37 -881.51 -4.73 -22.83 16 10 C 0.05 1.57 5.74 86.45 0.50 2.07 16 11 C -0.12 -5.10 6.64 31.49 0.21 -4.89 16 12 C 0.01 0.38 2.58 -10.64 -0.03 0.35 16 13 H 0.04 1.82 5.56 -2.39 -0.01 1.80 16 14 C -0.51 -29.49 8.63 25.60 0.22 -29.27 16 15 H 0.03 1.78 7.93 -2.91 -0.02 1.76 16 16 C 0.01 0.59 5.47 84.65 0.46 1.05 16 17 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 18 Si 0.95 44.56 26.91 68.60 1.85 46.40 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.25 -10.68 6.97 99.48 0.69 -9.99 16 22 C 0.05 2.23 6.02 86.45 0.52 2.75 16 23 C 0.04 0.81 6.15 86.77 0.53 1.34 16 24 H 0.05 0.62 8.10 -2.39 -0.02 0.60 16 25 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.01 8.04 -2.39 -0.02 0.99 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.10 6.91 -2.39 -0.02 1.08 16 31 H 0.04 1.05 7.96 -2.39 -0.02 1.03 16 32 H 0.07 1.79 7.18 -2.38 -0.02 1.77 16 33 H 0.03 0.90 7.88 -2.39 -0.02 0.88 16 34 H 0.07 2.09 7.13 -2.39 -0.02 2.07 16 35 H 0.09 2.71 7.76 -2.39 -0.02 2.70 16 36 H 0.03 1.17 7.82 -2.38 -0.02 1.15 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 2.29 7.70 -2.39 -0.02 2.27 16 39 H 0.27 15.67 8.31 -92.70 -0.77 14.89 16 40 H 0.02 1.05 7.63 -2.39 -0.02 1.03 16 41 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.05 0.86 7.68 -2.39 -0.02 0.85 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.21 327.52 -1.62 -65.84 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.93 Total: 12.36 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.61 Total: -25.19 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -9.00 Total: -99.42 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.85 Total: 46.40 kcal Total: -64.21 -1.62 -65.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692833737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.047 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds