Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46867 * 60.00042 * 9 7 5 11 11 H 1.48503 * 109.47227 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47276 * 300.00113 * 9 7 5 13 13 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 14 14 C 1.47592 * 110.99572 * 61.15633 * 13 2 1 15 15 C 1.52162 * 107.41201 * 177.39689 * 14 13 2 16 16 H 1.08996 * 110.70499 * 302.22862 * 15 14 13 17 17 C 1.53138 * 114.43580 * 176.89980 * 15 14 13 18 18 C 1.55075 * 104.08730 * 215.18261 * 17 15 14 19 19 C 1.55279 * 104.90926 * 2.79866 * 18 17 15 20 20 N 1.46951 * 103.39955 * 24.07524 * 19 18 17 21 21 C 1.45633 * 117.16517 * 197.48834 * 20 19 18 22 22 C 1.46588 * 111.00100 * 295.00339 * 13 2 1 23 23 H 1.08995 * 109.16520 * 59.47086 * 22 13 2 24 24 C 1.52998 * 109.16337 * 300.22306 * 22 13 2 25 25 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 27 27 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 28 28 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 29 29 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 30 30 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.86948 * 296.87547 * 14 13 2 32 32 H 1.08996 * 109.86979 * 57.92579 * 14 13 2 33 33 H 1.08999 * 110.51617 * 333.83513 * 17 15 14 34 34 H 1.09002 * 110.50478 * 96.39917 * 17 15 14 35 35 H 1.08990 * 110.35063 * 121.65619 * 18 17 15 36 36 H 1.08999 * 110.34873 * 243.83532 * 18 17 15 37 37 H 1.08995 * 110.63490 * 265.60061 * 19 18 17 38 38 H 1.09004 * 110.63388 * 142.55223 * 19 18 17 39 39 H 1.09001 * 109.84737 * 61.03375 * 21 20 19 40 40 H 1.08999 * 109.84992 * 300.04443 * 21 20 19 41 41 H 1.08993 * 109.47426 * 60.00001 * 24 22 13 42 42 H 1.09002 * 109.47380 * 180.02562 * 24 22 13 43 43 H 1.09008 * 109.47238 * 299.99502 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.6838 -1.6884 -1.2273 11 1 6.5870 -1.7603 -3.6497 12 1 6.4855 0.3694 -2.4950 13 7 2.0196 -0.6925 1.1995 14 6 1.5692 -2.0979 1.2197 15 6 2.1724 -2.7517 2.4542 16 1 3.2597 -2.6766 2.4377 17 6 1.7446 -4.2055 2.6741 18 6 1.6560 -4.3438 4.2161 19 6 1.9731 -2.9256 4.7633 20 7 1.6237 -2.0421 3.6422 21 6 2.1586 -0.6879 3.6711 22 6 1.6494 0.0376 2.4155 23 1 0.5639 0.1213 2.4661 24 6 2.2593 1.4398 2.3648 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1369 30 1 4.0607 -2.2423 -4.0363 31 1 0.4813 -2.1374 1.2737 32 1 1.9154 -2.6108 0.3224 33 1 0.7723 -4.3908 2.2177 34 1 2.4915 -4.8887 2.2697 35 1 0.6524 -4.6488 4.5123 36 1 2.3917 -5.0636 4.5750 37 1 3.0315 -2.8359 5.0076 38 1 1.3565 -2.7032 5.6342 39 1 3.2481 -0.7202 3.6638 40 1 1.8090 -0.1708 4.5647 41 1 1.8808 1.9692 1.4905 42 1 1.9874 1.9872 3.2673 43 1 3.3447 1.3619 2.3008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -8.640191 kcal Electronic energy + Delta-G solvation = -20278.392238 eV Core-core repulsion = 17550.403267 eV Total energy + Delta-G solvation = -2727.988971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23932 -38.56486 -35.44897 -34.20075 -32.44679 -31.70213 -29.44154 -28.90417 -26.53128 -25.39370 -25.00225 -22.21342 -21.77971 -21.09887 -19.86919 -18.34780 -17.23532 -16.84024 -16.57492 -15.99256 -15.83664 -15.52284 -15.09350 -14.64672 -14.42679 -14.00198 -13.82643 -13.52879 -13.39756 -13.10774 -13.02312 -12.80565 -12.63136 -12.55044 -12.40715 -12.26378 -12.17202 -11.88069 -11.79503 -11.67470 -11.37665 -11.14893 -11.08878 -10.88168 -10.45317 -9.40508 -8.83152 -8.09270 -6.13818 1.40309 1.42609 1.50172 2.46792 3.01749 3.05727 3.26273 3.68756 3.78463 3.97561 4.13270 4.24213 4.30506 4.31531 4.37949 4.43875 4.50159 4.59337 4.66895 4.68597 4.76320 4.78974 4.82345 4.93130 4.99765 5.00936 5.06868 5.08553 5.16257 5.20012 5.25125 5.29832 5.31073 5.47315 5.53047 5.73511 5.89718 5.91882 6.25295 6.36934 6.51465 6.60941 6.99528 7.51667 9.02551 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.007290 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.159636 B = 3840.099916 C = 4293.025783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.071 0.929 4 C 0.035 3.965 5 C -0.497 4.497 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.535 5.535 14 C 0.084 3.916 15 C 0.067 3.933 16 H 0.035 0.965 17 C -0.116 4.116 18 C -0.111 4.111 19 C 0.042 3.958 20 N -0.535 5.535 21 C 0.068 3.932 22 C 0.085 3.915 23 H 0.042 0.958 24 C -0.139 4.139 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.056 0.944 28 H -0.002 1.002 29 H -0.010 1.010 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -0.492 16.785 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.089 0.911 4 C -0.002 4.002 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.259 5.259 14 C -0.044 4.044 15 C -0.041 4.041 16 H 0.053 0.947 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.085 4.085 20 N -0.260 5.260 21 C -0.060 4.060 22 C -0.023 4.023 23 H 0.060 0.940 24 C -0.197 4.197 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.008 0.992 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.815 -0.481 16.645 17.334 hybrid contribution 1.049 -0.091 -0.745 1.290 sum -3.766 -0.572 15.900 16.350 Atomic orbital electron populations 1.22353 0.97724 1.01283 1.01740 1.21619 0.91667 0.97723 0.90219 0.91077 1.19084 0.95201 0.94425 0.91477 1.21418 0.93189 1.32391 1.06542 0.92639 1.25814 1.02628 0.95704 0.95758 1.70088 1.37049 1.38011 1.12965 0.85680 0.80900 0.78364 0.77112 1.19964 1.21233 1.19526 1.61637 1.61200 1.01518 1.01588 1.21786 0.96724 0.89116 0.96784 1.22357 0.96451 0.94364 0.90935 0.94707 1.22121 1.01876 0.93904 0.97611 1.22537 1.03030 0.95892 0.93420 1.22901 0.99038 0.92544 0.94054 1.63951 1.56729 1.02033 1.03303 1.22088 0.96852 0.89282 0.97801 1.21660 0.97610 0.93842 0.89189 0.94027 1.21822 1.00895 0.94712 1.02251 0.93578 0.91741 0.92501 0.98403 0.99151 0.93289 0.94587 0.92677 0.91151 0.91135 0.89945 0.89971 0.94445 0.88719 0.95448 0.88453 0.92835 0.89996 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.09 8.57 71.98 0.62 -5.48 16 2 C 0.10 4.00 2.02 44.91 0.09 4.09 16 3 H 0.07 2.99 6.01 -2.39 -0.01 2.98 16 4 C 0.04 1.87 4.22 29.85 0.13 1.99 16 5 C -0.50 -28.53 8.84 25.60 0.23 -28.30 16 6 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 9 Si 0.95 45.98 29.54 68.60 2.03 48.01 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 N -0.53 -20.78 4.11 -845.13 -3.47 -24.25 16 14 C 0.08 3.21 4.40 85.89 0.38 3.59 16 15 C 0.07 2.19 2.61 44.30 0.12 2.31 16 16 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16 17 C -0.12 -3.06 6.66 31.35 0.21 -2.85 16 18 C -0.11 -2.22 7.06 32.09 0.23 -1.99 16 19 C 0.04 0.91 6.74 87.08 0.59 1.50 16 20 N -0.54 -14.90 4.85 -864.35 -4.20 -19.10 16 21 C 0.07 1.88 5.31 86.78 0.46 2.34 16 22 C 0.09 2.65 2.30 45.21 0.10 2.76 16 23 H 0.04 1.30 6.38 -2.39 -0.02 1.28 16 24 C -0.14 -3.88 8.93 71.98 0.64 -3.23 16 25 H 0.05 1.67 6.50 -2.38 -0.02 1.65 16 26 H 0.06 1.98 6.51 -2.39 -0.02 1.97 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.00 -0.13 6.08 -2.39 -0.01 -0.14 16 29 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.04 1.35 6.54 -2.39 -0.02 1.33 16 32 H 0.05 2.52 6.11 -2.39 -0.01 2.50 16 33 H 0.07 1.85 8.02 -2.39 -0.02 1.83 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.03 0.83 8.02 -2.39 -0.02 0.81 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.57 6.26 -2.39 -0.01 1.55 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -64.49 318.11 -0.15 -64.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.96 Total: 11.48 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.24 Total: -22.99 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -7.38 Total: -101.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -64.49 -0.15 -64.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.005 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds