Wall clock time and date at job start Mon Mar 30 2020 05:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 108.98472 * 2 1 4 4 C 1.54261 * 108.99434 * 241.15478 * 2 1 3 5 5 N 1.44247 * 108.64858 * 160.86245 * 4 2 1 6 6 C 1.46907 * 111.00000 * 219.84724 * 5 4 2 7 7 C 1.48198 * 114.27590 * 93.39482 * 5 4 2 8 8 C 1.53930 * 112.77529 * 318.13123 * 7 5 4 9 9 N 1.44260 * 112.54476 * 318.38623 * 8 7 5 10 10 C 1.46901 * 111.00208 * 217.13554 * 9 8 7 11 11 C 1.52997 * 109.47440 * 73.00407 * 10 9 8 12 12 C 1.50706 * 115.54877 * 269.90120 * 11 10 9 13 13 H 1.08008 * 119.99723 * 114.68375 * 12 11 10 14 14 C 1.37870 * 120.00134 * 294.68232 * 12 11 10 15 15 N 1.31520 * 120.00045 * 162.75743 * 14 12 11 16 16 Si 1.86804 * 119.99936 * 342.75148 * 14 12 11 17 17 H 1.48497 * 109.46667 * 85.12278 * 16 14 12 18 18 H 1.48504 * 109.47235 * 205.11809 * 16 14 12 19 19 H 1.48490 * 109.47360 * 325.12043 * 16 14 12 20 20 C 1.52999 * 117.49907 * 124.19273 * 11 10 9 21 21 C 1.52999 * 60.00021 * 252.51053 * 20 11 10 22 22 C 1.46141 * 108.92948 * 118.81436 * 2 1 3 23 23 H 1.08996 * 109.47654 * 178.84092 * 1 2 3 24 24 H 1.09005 * 109.46706 * 298.84394 * 1 2 3 25 25 H 1.09002 * 109.47111 * 58.83870 * 1 2 3 26 26 H 1.08998 * 109.60984 * 280.61777 * 4 2 1 27 27 H 1.09002 * 109.60391 * 41.11733 * 4 2 1 28 28 H 1.08997 * 109.46790 * 60.00646 * 6 5 4 29 29 H 1.08999 * 109.47000 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47120 * 300.00557 * 6 5 4 31 31 H 1.08999 * 108.82370 * 197.28294 * 7 5 4 32 32 H 1.09000 * 108.82516 * 78.98509 * 7 5 4 33 33 H 1.09000 * 108.87444 * 197.59265 * 8 7 5 34 34 H 1.09004 * 108.86829 * 79.17061 * 8 7 5 35 35 H 1.08996 * 109.47407 * 193.01223 * 10 9 8 36 36 H 1.09007 * 109.46731 * 313.00511 * 10 9 8 37 37 H 0.96998 * 119.99894 * 179.97438 * 15 14 12 38 38 H 1.09000 * 117.49906 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.49774 * 145.02477 * 20 11 10 40 40 H 1.08995 * 117.50096 * 252.50859 * 21 20 11 41 41 H 1.08999 * 117.51839 * 107.47973 * 21 20 11 42 42 H 1.09000 * 108.93511 * 302.13828 * 22 2 1 43 43 H 1.08997 * 108.93979 * 60.74168 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8845 1.0306 0.0000 4 6 2.0320 -0.7037 -1.2776 5 7 3.4031 -0.3189 -1.5077 6 6 3.6550 -0.0982 -2.9381 7 6 4.4020 -1.2486 -0.9298 8 6 4.0189 -1.7339 0.4798 9 7 3.4823 -0.6769 1.3019 10 6 3.9232 -0.8186 2.6960 11 6 5.4016 -0.4400 2.8043 12 6 6.3781 -1.5715 2.6111 13 1 7.0456 -1.5696 1.7620 14 6 6.4195 -2.6089 3.5182 15 7 7.0041 -3.7419 3.1952 16 14 5.6453 -2.4053 5.2060 17 1 4.1969 -2.7233 5.1277 18 1 6.3031 -3.3269 6.1668 19 1 5.8203 -1.0041 5.6651 20 6 5.7787 0.6566 3.8024 21 6 5.8152 0.9440 2.3001 22 6 2.0040 -0.6663 1.2112 23 1 -0.3634 -1.0274 -0.0208 24 1 -0.3633 0.4958 0.9002 25 1 -0.3633 0.5318 -0.8794 26 1 1.9722 -1.7842 -1.1477 27 1 1.4196 -0.4005 -2.1269 28 1 3.0033 0.6953 -3.3036 29 1 4.6960 0.1903 -3.0834 30 1 3.4527 -1.0170 -3.4886 31 1 5.3654 -0.7414 -0.8774 32 1 4.4979 -2.1139 -1.5857 33 1 4.9053 -2.1423 0.9652 34 1 3.2731 -2.5238 0.3901 35 1 3.3319 -0.1606 3.3328 36 1 3.7882 -1.8517 3.0164 37 1 7.0335 -4.4717 3.8335 38 1 4.9736 1.1080 4.3822 39 1 6.7333 0.5598 4.3196 40 1 6.7937 1.0364 1.8290 41 1 5.0341 1.5847 1.8908 42 1 1.6000 -0.1483 2.0810 43 1 1.6422 -1.6944 1.2141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707574437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:10 Heat of formation + Delta-G solvation = 41.751629 kcal Electronic energy + Delta-G solvation = -20288.455586 eV Core-core repulsion = 17562.651768 eV Total energy + Delta-G solvation = -2725.803818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.23778 -36.97226 -35.00103 -33.70114 -32.12988 -28.97152 -26.99603 -26.71344 -25.35300 -24.38028 -22.52388 -21.32139 -19.80347 -19.70422 -18.55581 -16.45484 -15.92391 -15.27792 -14.89978 -14.61754 -14.48280 -13.68093 -13.44420 -13.36193 -13.10543 -12.69506 -12.58474 -12.46635 -12.18150 -11.74240 -11.69233 -11.42503 -11.05366 -10.96516 -10.75774 -10.54674 -10.38809 -10.32930 -10.16034 -10.07259 -9.96425 -9.34903 -8.92448 -8.55935 -8.21394 -7.78523 -7.44768 -6.14301 -4.06994 3.29213 3.39754 3.49572 4.17745 4.44492 4.53316 5.04487 5.09916 5.14167 5.39095 5.46329 5.47125 5.61136 5.62712 5.69995 5.75595 5.82663 5.85181 5.92208 5.99963 6.02621 6.08723 6.15785 6.23487 6.30045 6.35624 6.41528 6.52853 6.60573 6.70013 6.75792 6.79153 6.95124 6.99406 7.25461 7.35953 7.45614 7.64678 7.80388 7.98865 8.02767 8.55789 8.94212 9.53957 10.96900 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.007363 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.369649 B = 3801.738120 C = 4060.443378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.085 0.915 4 C 0.077 3.923 5 N -0.546 5.546 6 C 0.033 3.967 7 C 0.080 3.920 8 C 0.045 3.955 9 N -0.506 5.506 10 C 0.090 3.910 11 C 0.005 3.995 12 C -0.484 4.484 13 H 0.076 0.924 14 C 0.081 3.919 15 N -0.891 5.891 16 Si 0.863 3.137 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.251 1.251 20 C -0.203 4.203 21 C -0.157 4.157 22 C 0.059 3.941 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.015 0.985 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.120 0.880 34 H 0.016 0.984 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 5.871 -7.081 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.103 0.897 4 C -0.052 4.052 5 N -0.270 5.270 6 C -0.115 4.115 7 C -0.047 4.047 8 C -0.084 4.084 9 N -0.228 5.228 10 C -0.037 4.037 11 C 0.004 3.996 12 C -0.521 4.521 13 H 0.094 0.906 14 C -0.122 4.122 15 N -0.527 5.527 16 Si 0.690 3.310 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.175 1.175 20 C -0.241 4.241 21 C -0.195 4.195 22 C -0.068 4.068 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.138 0.862 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.282 6.523 -6.954 14.022 hybrid contribution -0.805 -1.609 0.879 2.002 sum -11.087 4.914 -6.075 13.564 Atomic orbital electron populations 1.21844 0.95769 1.01279 1.01447 1.20123 0.93567 1.01879 0.94624 0.89715 1.21739 0.89067 0.97343 0.97078 1.60341 1.02839 1.50666 1.13148 1.22327 1.01921 0.99175 0.88085 1.22429 0.95218 0.92692 0.94371 1.22163 1.02069 0.91017 0.93119 1.61328 1.05793 1.46759 1.08941 1.21980 0.95967 0.98490 0.87269 1.19310 0.91939 0.89123 0.99249 1.20287 1.18897 1.02330 1.10612 0.90619 1.24925 0.94685 0.94336 0.98294 1.69990 1.44726 1.02835 1.35152 0.87077 0.79261 0.79369 0.85331 1.20561 1.22068 1.17464 1.23097 1.01511 1.07242 0.92217 1.22525 1.00889 1.00886 0.95184 1.21138 0.89564 0.98392 0.97745 0.93223 0.92755 0.92833 0.94947 0.92232 0.92081 0.91712 0.96665 0.90496 0.95868 0.86210 0.96595 0.93459 0.94859 0.92671 0.91814 0.90045 0.90648 0.90346 0.92193 0.95938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.00 37.16 0.33 -1.27 16 2 C -0.08 -1.15 2.60 -93.22 -0.24 -1.39 16 3 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 4 C 0.08 1.07 4.78 -4.58 -0.02 1.05 16 5 N -0.55 -8.43 4.40 -242.55 -1.07 -9.49 16 6 C 0.03 0.42 9.29 60.07 0.56 0.98 16 7 C 0.08 1.40 5.75 -2.62 -0.02 1.39 16 8 C 0.05 0.89 4.86 -4.75 -0.02 0.87 16 9 N -0.51 -9.70 4.15 -239.23 -0.99 -10.69 16 10 C 0.09 1.93 4.27 -3.82 -0.02 1.91 16 11 C 0.01 0.12 0.77 -155.66 -0.12 0.00 16 12 C -0.48 -12.95 7.18 -34.44 -0.25 -13.20 16 13 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 14 C 0.08 2.23 5.30 -17.82 -0.09 2.13 16 15 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 16 Si 0.86 21.09 25.75 -169.99 -4.38 16.72 16 17 H -0.28 -6.75 7.01 56.52 0.40 -6.35 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.25 -5.88 5.78 56.52 0.33 -5.56 16 20 C -0.20 -4.37 7.71 -26.73 -0.21 -4.58 16 21 C -0.16 -3.32 9.74 -26.73 -0.26 -3.58 16 22 C 0.06 0.96 4.19 -6.42 -0.03 0.94 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.03 0.48 6.97 -51.93 -0.36 0.12 16 27 H 0.06 0.73 7.43 -51.93 -0.39 0.34 16 28 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.02 0.39 8.04 -51.93 -0.42 -0.03 16 33 H 0.12 2.81 5.16 -51.93 -0.27 2.54 16 34 H 0.02 0.31 6.55 -51.93 -0.34 -0.03 16 35 H 0.05 0.95 7.38 -51.93 -0.38 0.56 16 36 H 0.03 0.78 6.46 -51.93 -0.34 0.44 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 39 H 0.08 1.82 7.98 -51.93 -0.41 1.40 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 0.94 7.54 -51.93 -0.39 0.54 16 43 H 0.02 0.37 7.38 -51.93 -0.38 -0.01 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -27.81 320.13 -9.18 -36.99 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.95 Total: 1.77 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.38 Total: -14.75 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -1.29 Total: -45.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.38 Total: 16.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.81 -9.18 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707574437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.742 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds