Wall clock time and date at job start Mon Mar 30 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 108.98472 * 2 1 4 4 C 1.54261 * 108.99434 * 241.15478 * 2 1 3 5 5 N 1.44247 * 108.64858 * 160.86245 * 4 2 1 6 6 C 1.46907 * 111.00000 * 219.84724 * 5 4 2 7 7 C 1.48198 * 114.27590 * 93.39482 * 5 4 2 8 8 C 1.53930 * 112.77529 * 318.13123 * 7 5 4 9 9 N 1.44260 * 112.54476 * 318.38623 * 8 7 5 10 10 C 1.46901 * 111.00208 * 217.13554 * 9 8 7 11 11 C 1.52997 * 109.47440 * 73.00407 * 10 9 8 12 12 C 1.50706 * 115.54877 * 269.90120 * 11 10 9 13 13 H 1.08008 * 119.99723 * 114.68375 * 12 11 10 14 14 C 1.37870 * 120.00134 * 294.68232 * 12 11 10 15 15 N 1.31520 * 120.00045 * 162.75743 * 14 12 11 16 16 Si 1.86804 * 119.99936 * 342.75148 * 14 12 11 17 17 H 1.48497 * 109.46667 * 85.12278 * 16 14 12 18 18 H 1.48504 * 109.47235 * 205.11809 * 16 14 12 19 19 H 1.48490 * 109.47360 * 325.12043 * 16 14 12 20 20 C 1.52999 * 117.49907 * 124.19273 * 11 10 9 21 21 C 1.52999 * 60.00021 * 252.51053 * 20 11 10 22 22 C 1.46141 * 108.92948 * 118.81436 * 2 1 3 23 23 H 1.08996 * 109.47654 * 178.84092 * 1 2 3 24 24 H 1.09005 * 109.46706 * 298.84394 * 1 2 3 25 25 H 1.09002 * 109.47111 * 58.83870 * 1 2 3 26 26 H 1.08998 * 109.60984 * 280.61777 * 4 2 1 27 27 H 1.09002 * 109.60391 * 41.11733 * 4 2 1 28 28 H 1.08997 * 109.46790 * 60.00646 * 6 5 4 29 29 H 1.08999 * 109.47000 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47120 * 300.00557 * 6 5 4 31 31 H 1.08999 * 108.82370 * 197.28294 * 7 5 4 32 32 H 1.09000 * 108.82516 * 78.98509 * 7 5 4 33 33 H 1.09000 * 108.87444 * 197.59265 * 8 7 5 34 34 H 1.09004 * 108.86829 * 79.17061 * 8 7 5 35 35 H 1.08996 * 109.47407 * 193.01223 * 10 9 8 36 36 H 1.09007 * 109.46731 * 313.00511 * 10 9 8 37 37 H 0.96998 * 119.99894 * 179.97438 * 15 14 12 38 38 H 1.09000 * 117.49906 * 0.02562 * 20 11 10 39 39 H 1.09001 * 117.49774 * 145.02477 * 20 11 10 40 40 H 1.08995 * 117.50096 * 252.50859 * 21 20 11 41 41 H 1.08999 * 117.51839 * 107.47973 * 21 20 11 42 42 H 1.09000 * 108.93511 * 302.13828 * 22 2 1 43 43 H 1.08997 * 108.93979 * 60.74168 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8845 1.0306 0.0000 4 6 2.0320 -0.7037 -1.2776 5 7 3.4031 -0.3189 -1.5077 6 6 3.6550 -0.0982 -2.9381 7 6 4.4020 -1.2486 -0.9298 8 6 4.0189 -1.7339 0.4798 9 7 3.4823 -0.6769 1.3019 10 6 3.9232 -0.8186 2.6960 11 6 5.4016 -0.4400 2.8043 12 6 6.3781 -1.5715 2.6111 13 1 7.0456 -1.5696 1.7620 14 6 6.4195 -2.6089 3.5182 15 7 7.0041 -3.7419 3.1952 16 14 5.6453 -2.4053 5.2060 17 1 4.1969 -2.7233 5.1277 18 1 6.3031 -3.3269 6.1668 19 1 5.8203 -1.0041 5.6651 20 6 5.7787 0.6566 3.8024 21 6 5.8152 0.9440 2.3001 22 6 2.0040 -0.6663 1.2112 23 1 -0.3634 -1.0274 -0.0208 24 1 -0.3633 0.4958 0.9002 25 1 -0.3633 0.5318 -0.8794 26 1 1.9722 -1.7842 -1.1477 27 1 1.4196 -0.4005 -2.1269 28 1 3.0033 0.6953 -3.3036 29 1 4.6960 0.1903 -3.0834 30 1 3.4527 -1.0170 -3.4886 31 1 5.3654 -0.7414 -0.8774 32 1 4.4979 -2.1139 -1.5857 33 1 4.9053 -2.1423 0.9652 34 1 3.2731 -2.5238 0.3901 35 1 3.3319 -0.1606 3.3328 36 1 3.7882 -1.8517 3.0164 37 1 7.0335 -4.4717 3.8335 38 1 4.9736 1.1080 4.3822 39 1 6.7333 0.5598 4.3196 40 1 6.7937 1.0364 1.8290 41 1 5.0341 1.5847 1.8908 42 1 1.6000 -0.1483 2.0810 43 1 1.6422 -1.6944 1.2141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707574437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:09 Heat of formation + Delta-G solvation = 23.677432 kcal Electronic energy + Delta-G solvation = -20289.239342 eV Core-core repulsion = 17562.651768 eV Total energy + Delta-G solvation = -2726.587574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61850 -38.59386 -36.34674 -35.01315 -34.24748 -30.39343 -28.53770 -27.84851 -27.11383 -25.78624 -23.84310 -23.05310 -21.28512 -20.99367 -20.32638 -18.34854 -17.26138 -16.77988 -16.67539 -15.94949 -15.85349 -15.32062 -15.04661 -14.61817 -14.52222 -14.40370 -14.06587 -13.76403 -13.54361 -13.14606 -12.97058 -12.72837 -12.66214 -12.58122 -12.18589 -12.14739 -11.96208 -11.81477 -11.67544 -11.53763 -11.33609 -11.17115 -10.86180 -10.46472 -10.13747 -9.09644 -8.91281 -8.29084 -6.23996 1.33869 1.40302 1.53453 2.40093 2.84966 3.01767 3.15290 3.63837 3.95218 4.04636 4.10197 4.20458 4.25243 4.38290 4.49530 4.51003 4.55491 4.58717 4.67185 4.72735 4.75465 4.80959 4.83310 4.85104 4.93322 5.03502 5.04284 5.07275 5.16631 5.24980 5.25976 5.33829 5.37442 5.48307 5.60467 5.64062 5.77971 6.19522 6.39268 6.40796 6.46610 6.52154 6.79567 7.38494 8.85885 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.007363 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.369649 B = 3801.738120 C = 4060.443378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.075 0.925 4 C 0.076 3.924 5 N -0.555 5.555 6 C 0.033 3.967 7 C 0.090 3.910 8 C 0.055 3.945 9 N -0.507 5.507 10 C 0.098 3.902 11 C -0.016 4.016 12 C -0.475 4.475 13 H 0.030 0.970 14 C 0.029 3.971 15 N -0.939 5.939 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.299 1.299 19 H -0.229 1.229 20 C -0.192 4.192 21 C -0.142 4.142 22 C 0.059 3.941 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.007 0.993 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 7.962 -7.039 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.053 4.053 5 N -0.280 5.280 6 C -0.115 4.115 7 C -0.038 4.038 8 C -0.075 4.075 9 N -0.230 5.230 10 C -0.030 4.030 11 C -0.017 4.017 12 C -0.513 4.513 13 H 0.049 0.951 14 C -0.169 4.169 15 N -0.578 5.578 16 Si 0.743 3.257 17 H -0.198 1.198 18 H -0.226 1.226 19 H -0.152 1.152 20 C -0.230 4.230 21 C -0.179 4.179 22 C -0.069 4.069 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.087 0.913 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.954 8.645 -6.925 17.044 hybrid contribution 0.059 -2.254 0.741 2.373 sum -12.895 6.391 -6.185 15.664 Atomic orbital electron populations 1.21771 0.93104 1.01902 1.02734 1.20092 0.95664 1.00706 0.93344 0.90630 1.21831 0.88503 0.96718 0.98228 1.60334 1.03052 1.49677 1.14922 1.22396 1.02420 1.00243 0.86398 1.22170 0.95149 0.93107 0.93354 1.21933 0.99974 0.91408 0.94139 1.61412 1.07988 1.46003 1.07557 1.21814 0.95004 0.97304 0.88863 1.19224 0.92148 0.88626 1.01693 1.20350 1.18486 1.03712 1.08707 0.95146 1.25643 0.95581 0.93893 1.01815 1.70122 1.47428 1.03901 1.36396 0.86179 0.78574 0.80237 0.80682 1.19763 1.22579 1.15162 1.23124 1.01866 1.05572 0.92429 1.22473 1.00801 0.99468 0.95201 1.21281 0.87281 0.98655 0.99636 0.92938 0.91999 0.91076 0.96110 0.89633 0.89928 0.91964 0.95866 0.92514 0.95503 0.90709 0.96753 0.91253 0.97519 0.92810 0.89040 0.90968 0.91614 0.88692 0.91051 0.96375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.00 71.98 0.65 -1.86 16 2 C -0.08 -1.97 2.60 -12.48 -0.03 -2.00 16 3 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 4 C 0.08 1.93 4.78 87.23 0.42 2.35 16 5 N -0.56 -16.27 4.40 -921.28 -4.05 -20.32 16 6 C 0.03 0.76 9.29 127.69 1.19 1.95 16 7 C 0.09 3.19 5.75 86.37 0.50 3.69 16 8 C 0.05 2.22 4.86 87.11 0.42 2.64 16 9 N -0.51 -19.03 4.15 -910.79 -3.78 -22.81 16 10 C 0.10 4.08 4.27 86.30 0.37 4.45 16 11 C -0.02 -0.71 0.77 -52.93 -0.04 -0.75 16 12 C -0.48 -26.40 7.18 25.60 0.18 -26.22 16 13 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 14 C 0.03 1.65 5.30 84.65 0.45 2.10 16 15 N -0.94 -57.70 13.96 21.45 0.30 -57.41 16 16 Si 0.92 43.66 25.75 68.60 1.77 45.42 16 17 H -0.27 -12.54 7.01 99.48 0.70 -11.84 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.23 -9.97 5.78 99.48 0.58 -9.40 16 20 C -0.19 -7.83 7.71 30.59 0.24 -7.60 16 21 C -0.14 -5.81 9.74 30.59 0.30 -5.51 16 22 C 0.06 1.78 4.19 83.96 0.35 2.13 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 25 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 26 H 0.02 0.58 6.97 -2.39 -0.02 0.57 16 27 H 0.09 1.76 7.43 -2.39 -0.02 1.74 16 28 H 0.08 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 0.91 8.04 -2.39 -0.02 0.89 16 33 H 0.07 3.72 5.16 -2.39 -0.01 3.71 16 34 H 0.01 0.57 6.55 -2.38 -0.02 0.55 16 35 H 0.07 2.57 7.38 -2.39 -0.02 2.55 16 36 H 0.01 0.31 6.46 -2.38 -0.02 0.29 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 39 H 0.07 3.08 7.98 -2.39 -0.02 3.07 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.07 2.01 7.54 -2.39 -0.02 1.99 16 43 H 0.02 0.57 7.38 -2.39 -0.02 0.55 16 Total: -1.00 -62.00 320.13 0.02 -61.98 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.80 Total: 17.78 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.98 Total: -24.64 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -7.53 Total: -100.54 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.77 Total: 45.42 kcal Total: -62.00 0.02 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707574437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.654 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds