Wall clock time and date at job start Mon Mar 30 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47152 * 2 1 4 4 C 1.50694 * 109.47470 * 120.00427 * 2 1 3 5 5 H 1.07995 * 120.00154 * 120.00134 * 4 2 1 6 6 C 1.37886 * 119.99925 * 299.99889 * 4 2 1 7 7 N 1.31517 * 119.99667 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00044 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47449 * 89.99771 * 8 6 4 10 10 H 1.48507 * 109.46865 * 209.99863 * 8 6 4 11 11 H 1.48499 * 109.47091 * 329.99396 * 8 6 4 12 12 N 1.46900 * 109.46849 * 240.00284 * 2 1 3 13 13 C 1.46893 * 111.00287 * 306.04665 * 12 2 1 14 14 C 1.46902 * 111.00008 * 69.99866 * 12 2 1 15 15 H 1.09003 * 109.43027 * 299.89101 * 14 12 2 16 16 C 1.53134 * 109.43105 * 59.73561 * 14 12 2 17 17 C 1.53732 * 108.42938 * 175.00165 * 16 14 12 18 18 H 1.09002 * 112.26144 * 171.44042 * 17 16 14 19 19 C 1.54603 * 108.82500 * 46.60291 * 17 16 14 20 20 C 1.54285 * 104.84217 * 271.73137 * 19 17 16 21 21 C 1.54613 * 104.84294 * 359.97438 * 20 19 17 22 22 H 1.09001 * 112.21634 * 212.52203 * 21 20 19 23 23 N 1.48716 * 104.77956 * 334.56370 * 21 20 19 24 24 C 1.53138 * 109.42790 * 179.97438 * 14 12 2 25 25 H 1.08998 * 109.56638 * 65.96856 * 24 14 12 26 26 C 1.52998 * 109.57093 * 305.72989 * 24 14 12 27 27 H 1.09004 * 109.47698 * 59.99739 * 1 2 3 28 28 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46711 * 299.99664 * 1 2 3 30 30 H 0.96999 * 119.99766 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47352 * 59.99709 * 13 12 2 32 32 H 1.08994 * 109.47526 * 180.02562 * 13 12 2 33 33 H 1.09007 * 109.46982 * 300.00001 * 13 12 2 34 34 H 1.09000 * 109.57109 * 293.91620 * 16 14 12 35 35 H 1.09010 * 109.56654 * 54.26845 * 16 14 12 36 36 H 1.08992 * 110.36847 * 152.88390 * 19 17 16 37 37 H 1.09001 * 110.35989 * 30.56710 * 19 17 16 38 38 H 1.08994 * 110.36281 * 241.15566 * 20 19 17 39 39 H 1.08996 * 110.46275 * 118.88209 * 20 19 17 40 40 H 1.00905 * 110.99463 * 160.96212 * 23 21 20 41 41 H 1.08997 * 109.47426 * 66.68710 * 26 24 14 42 42 H 1.09002 * 109.47329 * 186.69061 * 26 24 14 43 43 H 1.09005 * 109.46622 * 306.68596 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7120 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0353 -1.3080 14 6 1.7528 0.0973 -2.4091 15 1 0.6787 0.2531 -2.5108 16 6 2.4547 1.4537 -2.2970 17 6 2.2663 2.2094 -3.6224 18 1 2.6119 3.2415 -3.5620 19 6 0.7821 2.1136 -4.0447 20 6 0.6895 0.8140 -4.8710 21 6 2.1263 0.2429 -4.8735 22 1 2.3571 -0.2881 -5.7970 23 7 3.0048 1.4254 -4.6695 24 6 2.2771 -0.6557 -3.6351 25 1 1.7023 -1.5713 -3.7745 26 6 3.7529 -1.0034 -3.4305 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7090 1.1613 3.4844 31 1 0.3489 -1.9548 -1.3694 32 1 1.8138 -2.5259 -2.2042 33 1 1.7059 -2.6221 -0.4303 34 1 2.0044 2.0323 -1.4905 35 1 3.5142 1.3005 -2.0912 36 1 0.5055 2.9724 -4.6561 37 1 0.1410 2.0505 -3.1654 38 1 0.3673 1.0338 -5.8888 39 1 0.0025 0.1111 -4.3999 40 1 3.9198 1.1450 -4.3494 41 1 3.8470 -1.7260 -2.6198 42 1 4.1558 -1.4323 -4.3480 43 1 4.3074 -0.0996 -3.1779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709339938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:28 Heat of formation + Delta-G solvation = 14.962762 kcal Electronic energy + Delta-G solvation = -20742.073123 eV Core-core repulsion = 18015.107653 eV Total energy + Delta-G solvation = -2726.965470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77896 -36.79181 -33.25203 -32.11747 -30.77055 -30.04660 -28.28838 -26.90655 -25.23892 -24.41352 -23.02448 -21.81417 -19.99446 -19.43137 -17.75865 -16.50755 -16.17400 -15.85396 -14.77865 -14.62432 -13.86416 -13.52943 -13.16920 -13.04752 -12.69961 -12.64195 -12.37188 -12.19222 -11.68486 -11.53605 -11.40938 -11.19996 -11.04931 -11.00708 -10.89269 -10.73861 -10.67315 -10.50036 -10.19375 -10.10602 -9.98440 -9.90492 -9.42610 -8.84849 -8.37030 -8.18755 -7.06586 -6.00330 -4.03285 3.30628 3.37075 3.40357 4.38666 4.42512 4.72226 4.90701 5.01878 5.19007 5.26726 5.31331 5.33930 5.51149 5.58396 5.68315 5.79207 5.86925 5.91775 6.01913 6.08208 6.12566 6.16727 6.21986 6.32974 6.37100 6.40216 6.48487 6.59971 6.67382 6.67848 6.79144 6.84029 6.88992 6.96803 7.16045 7.49092 7.55259 7.72668 7.86544 8.17867 8.41161 8.64011 9.03037 9.61567 11.06718 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.006573 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.274617 B = 4258.917164 C = 4493.800094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.209 3.791 3 H 0.043 0.957 4 C -0.496 4.496 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.032 3.968 14 C 0.089 3.911 15 H 0.039 0.961 16 C -0.139 4.139 17 C 0.064 3.936 18 H 0.092 0.908 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.069 3.931 22 H 0.090 0.910 23 N -0.664 5.664 24 C -0.116 4.116 25 H 0.068 0.932 26 C -0.136 4.136 27 H 0.004 0.996 28 H 0.030 0.970 29 H 0.086 0.914 30 H 0.259 0.741 31 H 0.015 0.985 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.339 0.661 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -0.243 -12.961 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.061 0.939 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.020 4.020 15 H 0.057 0.943 16 C -0.178 4.178 17 C -0.046 4.046 18 H 0.110 0.890 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.042 4.042 22 H 0.108 0.892 23 N -0.294 5.294 24 C -0.136 4.136 25 H 0.086 0.914 26 C -0.194 4.194 27 H 0.023 0.977 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.157 0.843 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.153 0.222 -13.369 13.421 hybrid contribution -0.572 -0.935 1.813 2.119 sum 0.581 -0.713 -11.556 11.593 Atomic orbital electron populations 1.22388 1.01177 0.99244 1.00243 1.19328 0.89501 0.94817 0.86084 0.93931 1.21124 1.30275 1.12374 0.89739 0.92133 1.24923 0.95304 0.95179 0.98947 1.69884 1.37192 1.23140 1.23292 0.86548 0.78502 0.79990 0.82641 1.20749 1.21421 1.20030 1.62396 1.58579 1.02079 1.02075 1.22260 0.96376 0.92273 1.00762 1.21609 0.97083 0.92785 0.90525 0.94311 1.22432 1.01826 0.96089 0.97468 1.23128 0.93714 0.97531 0.90196 0.88993 1.22314 0.95985 0.97565 0.99634 1.22341 0.96233 0.97025 0.99897 1.22832 0.93024 0.91427 0.96888 0.89222 1.64332 1.05047 1.17765 1.42292 1.22026 0.97770 0.98632 0.95182 0.91376 1.21720 0.94853 1.01963 1.00824 0.97656 0.95136 0.89489 0.93091 0.96620 0.93709 0.91246 0.90966 0.90883 0.91775 0.91096 0.91862 0.91474 0.84299 0.91052 0.94109 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.22 37.16 0.31 -3.81 16 2 C 0.21 5.10 2.12 -68.87 -0.15 4.96 16 3 H 0.04 1.14 5.95 -51.93 -0.31 0.83 16 4 C -0.50 -13.44 7.97 -34.44 -0.27 -13.72 16 5 H 0.06 1.66 7.10 -52.49 -0.37 1.28 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.36 11.32 55.43 0.63 -24.74 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.53 -10.83 3.78 -228.13 -0.86 -11.70 16 13 C 0.03 0.61 8.13 60.06 0.49 1.10 16 14 C 0.09 1.54 1.07 -67.57 -0.07 1.46 16 15 H 0.04 0.72 3.99 -51.93 -0.21 0.51 16 16 C -0.14 -2.34 4.11 -26.28 -0.11 -2.45 16 17 C 0.06 0.91 4.59 -64.63 -0.30 0.61 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.12 -1.58 5.98 -25.22 -0.15 -1.73 16 20 C -0.12 -1.49 5.97 -25.21 -0.15 -1.64 16 21 C 0.07 0.90 4.13 -65.47 -0.27 0.63 16 22 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 23 N -0.66 -8.91 7.47 -93.55 -0.70 -9.61 16 24 C -0.12 -1.68 1.71 -90.16 -0.15 -1.83 16 25 H 0.07 1.00 6.62 -51.93 -0.34 0.65 16 26 C -0.14 -1.93 8.05 37.16 0.30 -1.63 16 27 H 0.00 0.10 6.69 -51.93 -0.35 -0.25 16 28 H 0.03 0.71 6.33 -51.93 -0.33 0.39 16 29 H 0.09 2.32 6.07 -51.92 -0.32 2.01 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.30 6.21 -51.93 -0.32 -0.02 16 32 H 0.04 0.75 5.64 -51.93 -0.29 0.45 16 33 H 0.07 1.45 6.86 -51.92 -0.36 1.09 16 34 H 0.07 1.38 6.53 -51.93 -0.34 1.04 16 35 H 0.07 1.28 6.69 -51.92 -0.35 0.93 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.04 7.06 -51.93 -0.37 0.67 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 40 H 0.34 4.45 6.04 -39.29 -0.24 4.21 16 41 H 0.07 1.14 6.99 -51.93 -0.36 0.77 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.78 4.90 -51.93 -0.25 0.52 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -27.30 296.55 -8.83 -36.13 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.72 Total: 5.68 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.63 Total: -16.58 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.93 Total: -46.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.30 -8.83 -36.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709339938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.091 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds