Wall clock time and date at job start Mon Mar 30 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47152 * 2 1 4 4 C 1.50694 * 109.47470 * 120.00427 * 2 1 3 5 5 H 1.07995 * 120.00154 * 120.00134 * 4 2 1 6 6 C 1.37886 * 119.99925 * 299.99889 * 4 2 1 7 7 N 1.31517 * 119.99667 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00044 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47449 * 89.99771 * 8 6 4 10 10 H 1.48507 * 109.46865 * 209.99863 * 8 6 4 11 11 H 1.48499 * 109.47091 * 329.99396 * 8 6 4 12 12 N 1.46900 * 109.46849 * 240.00284 * 2 1 3 13 13 C 1.46893 * 111.00287 * 306.04665 * 12 2 1 14 14 C 1.46902 * 111.00008 * 69.99866 * 12 2 1 15 15 H 1.09003 * 109.43027 * 299.89101 * 14 12 2 16 16 C 1.53134 * 109.43105 * 59.73561 * 14 12 2 17 17 C 1.53732 * 108.42938 * 175.00165 * 16 14 12 18 18 H 1.09002 * 112.26144 * 171.44042 * 17 16 14 19 19 C 1.54603 * 108.82500 * 46.60291 * 17 16 14 20 20 C 1.54285 * 104.84217 * 271.73137 * 19 17 16 21 21 C 1.54613 * 104.84294 * 359.97438 * 20 19 17 22 22 H 1.09001 * 112.21634 * 212.52203 * 21 20 19 23 23 N 1.48716 * 104.77956 * 334.56370 * 21 20 19 24 24 C 1.53138 * 109.42790 * 179.97438 * 14 12 2 25 25 H 1.08998 * 109.56638 * 65.96856 * 24 14 12 26 26 C 1.52998 * 109.57093 * 305.72989 * 24 14 12 27 27 H 1.09004 * 109.47698 * 59.99739 * 1 2 3 28 28 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46711 * 299.99664 * 1 2 3 30 30 H 0.96999 * 119.99766 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47352 * 59.99709 * 13 12 2 32 32 H 1.08994 * 109.47526 * 180.02562 * 13 12 2 33 33 H 1.09007 * 109.46982 * 300.00001 * 13 12 2 34 34 H 1.09000 * 109.57109 * 293.91620 * 16 14 12 35 35 H 1.09010 * 109.56654 * 54.26845 * 16 14 12 36 36 H 1.08992 * 110.36847 * 152.88390 * 19 17 16 37 37 H 1.09001 * 110.35989 * 30.56710 * 19 17 16 38 38 H 1.08994 * 110.36281 * 241.15566 * 20 19 17 39 39 H 1.08996 * 110.46275 * 118.88209 * 20 19 17 40 40 H 1.00905 * 110.99463 * 160.96212 * 23 21 20 41 41 H 1.08997 * 109.47426 * 66.68710 * 26 24 14 42 42 H 1.09002 * 109.47329 * 186.69061 * 26 24 14 43 43 H 1.09005 * 109.46622 * 306.68596 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7120 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0353 -1.3080 14 6 1.7528 0.0973 -2.4091 15 1 0.6787 0.2531 -2.5108 16 6 2.4547 1.4537 -2.2970 17 6 2.2663 2.2094 -3.6224 18 1 2.6119 3.2415 -3.5620 19 6 0.7821 2.1136 -4.0447 20 6 0.6895 0.8140 -4.8710 21 6 2.1263 0.2429 -4.8735 22 1 2.3571 -0.2881 -5.7970 23 7 3.0048 1.4254 -4.6695 24 6 2.2771 -0.6557 -3.6351 25 1 1.7023 -1.5713 -3.7745 26 6 3.7529 -1.0034 -3.4305 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7090 1.1613 3.4844 31 1 0.3489 -1.9548 -1.3694 32 1 1.8138 -2.5259 -2.2042 33 1 1.7059 -2.6221 -0.4303 34 1 2.0044 2.0323 -1.4905 35 1 3.5142 1.3005 -2.0912 36 1 0.5055 2.9724 -4.6561 37 1 0.1410 2.0505 -3.1654 38 1 0.3673 1.0338 -5.8888 39 1 0.0025 0.1111 -4.3999 40 1 3.9198 1.1450 -4.3494 41 1 3.8470 -1.7260 -2.6198 42 1 4.1558 -1.4323 -4.3480 43 1 4.3074 -0.0996 -3.1779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709339938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:28 Heat of formation + Delta-G solvation = -2.703669 kcal Electronic energy + Delta-G solvation = -20742.839197 eV Core-core repulsion = 18015.107653 eV Total energy + Delta-G solvation = -2727.731544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.01737 -38.42324 -35.00240 -33.59151 -32.07110 -31.30413 -30.05138 -28.15196 -27.30872 -25.96778 -24.36494 -23.14443 -21.24510 -20.95231 -19.04631 -18.33441 -17.55304 -17.34247 -16.64991 -15.88939 -15.50984 -15.06000 -14.68308 -14.36768 -14.23162 -14.03469 -13.81613 -13.43199 -13.33030 -12.92979 -12.92670 -12.69030 -12.62206 -12.50956 -12.33035 -12.25445 -12.17731 -12.08008 -12.03598 -11.77680 -11.31271 -11.15617 -10.87966 -10.85141 -10.44401 -9.35515 -8.75600 -8.10839 -6.20865 1.40087 1.40914 1.50794 2.41664 3.17949 3.25747 3.38020 3.73196 3.78531 4.06397 4.09786 4.16176 4.30883 4.36859 4.41423 4.48384 4.58877 4.69937 4.71955 4.79080 4.81776 4.85015 4.96363 4.97439 5.00677 5.06040 5.15199 5.16119 5.19012 5.23915 5.31189 5.35634 5.45207 5.52589 5.58816 5.72561 5.80737 5.84307 6.24538 6.45599 6.53606 6.81911 6.93999 7.48321 8.94963 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.006573 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.274617 B = 4258.917164 C = 4493.800094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.014 0.986 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.534 5.534 13 C 0.038 3.962 14 C 0.091 3.909 15 H 0.029 0.971 16 C -0.133 4.133 17 C 0.069 3.931 18 H 0.100 0.900 19 C -0.118 4.118 20 C -0.116 4.116 21 C 0.074 3.926 22 H 0.114 0.886 23 N -0.657 5.657 24 C -0.110 4.110 25 H 0.073 0.927 26 C -0.132 4.132 27 H 0.018 0.982 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.260 0.740 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.341 0.659 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -0.987 -14.850 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.109 3.891 3 H 0.031 0.969 4 C -0.550 4.550 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.257 5.257 13 C -0.111 4.111 14 C -0.017 4.017 15 H 0.046 0.954 16 C -0.172 4.172 17 C -0.041 4.041 18 H 0.118 0.882 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.037 4.037 22 H 0.132 0.868 23 N -0.288 5.288 24 C -0.130 4.130 25 H 0.091 0.909 26 C -0.189 4.189 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.635 -0.530 -15.276 15.373 hybrid contribution -0.713 -0.684 2.373 2.571 sum 0.922 -1.214 -12.903 12.993 Atomic orbital electron populations 1.22176 1.01019 0.98830 0.99473 1.19034 0.89400 0.93388 0.87273 0.96858 1.21405 1.30234 1.12281 0.91106 0.92856 1.25666 0.95511 0.95857 1.01743 1.70014 1.38053 1.24266 1.23836 0.85587 0.77954 0.79073 0.79182 1.20371 1.21042 1.19438 1.62301 1.58563 1.02711 1.02122 1.22221 0.96104 0.91480 1.01271 1.21676 0.96687 0.92985 0.90377 0.95369 1.22364 1.00637 0.95990 0.98241 1.23103 0.94623 0.97695 0.88682 0.88166 1.22312 0.94926 0.98978 0.99346 1.22361 0.96029 0.96243 1.00753 1.22920 0.93082 0.90897 0.96754 0.86844 1.64363 1.05169 1.17913 1.41329 1.22007 0.97894 0.98753 0.94348 0.90874 1.21668 0.94560 1.01311 1.01376 0.96259 0.95166 0.92299 0.93113 0.97021 0.90680 0.93206 0.94206 0.91928 0.90109 0.92999 0.89856 0.92031 0.83981 0.93053 0.91456 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 8.22 71.98 0.59 -7.08 16 2 C 0.22 10.89 2.12 44.17 0.09 10.99 16 3 H 0.01 0.76 5.95 -2.39 -0.01 0.75 16 4 C -0.51 -28.32 7.97 25.60 0.20 -28.11 16 5 H 0.05 2.97 7.10 -2.91 -0.02 2.95 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.53 -22.10 3.78 -875.68 -3.31 -25.42 16 13 C 0.04 1.43 8.13 127.69 1.04 2.47 16 14 C 0.09 3.12 1.07 45.01 0.05 3.17 16 15 H 0.03 1.04 3.99 -2.39 -0.01 1.04 16 16 C -0.13 -4.54 4.11 30.89 0.13 -4.41 16 17 C 0.07 1.87 4.59 45.06 0.21 2.07 16 18 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 19 C -0.12 -2.98 5.98 31.58 0.19 -2.79 16 20 C -0.12 -2.63 5.97 31.58 0.19 -2.44 16 21 C 0.07 1.68 4.13 45.37 0.19 1.87 16 22 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 23 N -0.66 -15.87 7.47 -449.90 -3.36 -19.23 16 24 C -0.11 -2.94 1.71 -10.49 -0.02 -2.96 16 25 H 0.07 1.92 6.62 -2.39 -0.02 1.90 16 26 C -0.13 -3.44 8.05 71.98 0.58 -2.86 16 27 H 0.02 0.85 6.69 -2.39 -0.02 0.83 16 28 H 0.03 1.44 6.33 -2.39 -0.02 1.42 16 29 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.01 0.44 6.21 -2.39 -0.01 0.43 16 32 H 0.07 2.38 5.64 -2.39 -0.01 2.37 16 33 H 0.05 2.08 6.86 -2.38 -0.02 2.06 16 34 H 0.04 1.59 6.53 -2.39 -0.02 1.58 16 35 H 0.06 2.23 6.69 -2.38 -0.02 2.21 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.51 7.06 -2.39 -0.02 1.49 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.48 7.08 -2.39 -0.02 1.47 16 40 H 0.34 8.13 6.04 -89.69 -0.54 7.58 16 41 H 0.05 1.55 6.99 -2.39 -0.02 1.53 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.32 4.90 -2.38 -0.01 1.30 16 Total: -1.00 -59.04 296.55 -0.05 -59.09 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.47 Total: 21.56 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.88 Total: -29.07 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -6.43 Total: -97.86 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.04 -0.05 -59.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709339938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.391 kcal (2) G-P(sol) polarization free energy of solvation -59.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds