Wall clock time and date at job start Mon Mar 30 2020 04:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47304 * 2 1 4 4 N 1.46899 * 109.47495 * 239.99632 * 2 1 3 5 5 C 1.53000 * 109.46751 * 120.00056 * 2 1 3 6 6 H 1.09004 * 109.53682 * 305.09517 * 5 2 1 7 7 C 1.53110 * 109.50741 * 65.19698 * 5 2 1 8 8 C 1.53121 * 109.16417 * 177.59775 * 7 5 2 9 9 C 1.53037 * 109.27613 * 302.34457 * 8 7 5 10 10 N 1.46857 * 109.52477 * 59.17744 * 9 8 7 11 11 C 1.46896 * 110.99847 * 174.16082 * 10 9 8 12 12 C 1.53004 * 109.47396 * 291.44363 * 11 10 9 13 13 C 1.50706 * 115.54670 * 305.91931 * 12 11 10 14 14 H 1.07992 * 120.00153 * 144.42108 * 13 12 11 15 15 C 1.37885 * 119.99843 * 324.41738 * 13 12 11 16 16 N 1.31516 * 119.99500 * 163.56512 * 15 13 12 17 17 Si 1.86792 * 120.00240 * 343.56713 * 15 13 12 18 18 H 1.48506 * 109.46994 * 95.50876 * 17 15 13 19 19 H 1.48494 * 109.47314 * 215.50766 * 17 15 13 20 20 H 1.48499 * 109.47091 * 335.51056 * 17 15 13 21 21 C 1.52998 * 117.50089 * 160.25092 * 12 11 10 22 22 C 1.52990 * 117.50085 * 91.58427 * 12 11 10 23 23 C 1.46846 * 111.19558 * 298.25772 * 10 9 8 24 24 H 1.08995 * 109.47656 * 300.00413 * 1 2 3 25 25 H 1.09000 * 109.46661 * 60.00383 * 1 2 3 26 26 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.00900 * 111.00167 * 300.00401 * 4 2 1 28 28 H 1.00902 * 110.99782 * 63.95174 * 4 2 1 29 29 H 1.09003 * 109.52886 * 57.69048 * 7 5 2 30 30 H 1.09005 * 109.57652 * 297.53047 * 7 5 2 31 31 H 1.09001 * 109.50518 * 182.40650 * 8 7 5 32 32 H 1.08997 * 109.50682 * 62.28625 * 8 7 5 33 33 H 1.09006 * 109.46577 * 299.16352 * 9 8 7 34 34 H 1.08999 * 109.45988 * 179.18844 * 9 8 7 35 35 H 1.09002 * 109.47377 * 51.44420 * 11 10 9 36 36 H 1.09001 * 109.46508 * 171.44539 * 11 10 9 37 37 H 0.96997 * 119.99543 * 180.02562 * 16 15 13 38 38 H 1.08996 * 117.49588 * 359.97438 * 21 12 11 39 39 H 1.08990 * 117.49924 * 145.01908 * 21 12 11 40 40 H 1.08999 * 117.50224 * 214.97898 * 22 12 11 41 41 H 1.09004 * 117.49667 * 0.02562 * 22 12 11 42 42 H 1.08992 * 109.45880 * 181.75230 * 23 10 9 43 43 H 1.08994 * 109.46383 * 301.72351 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0399 -0.7213 1.2493 6 1 1.6045 -0.2636 2.1376 7 6 1.6395 -2.1977 1.1864 8 6 2.2047 -2.9244 2.4100 9 6 3.7251 -2.7530 2.4416 10 7 4.0568 -1.3237 2.5022 11 6 5.5022 -1.1255 2.6733 12 6 5.9208 -1.5997 4.0665 13 6 5.1575 -0.9935 5.2159 14 1 4.9353 -1.5878 6.0898 15 6 4.7430 0.3200 5.1518 16 7 3.8188 0.7589 5.9781 17 14 5.4941 1.4760 3.8913 18 1 4.6270 1.5256 2.6866 19 1 5.6095 2.8367 4.4744 20 1 6.8427 0.9845 3.5106 21 6 7.4009 -1.9163 4.2900 22 6 6.3782 -3.0526 4.2103 23 6 3.5652 -0.6137 1.3145 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6962 -1.6480 -1.2227 28 1 1.7503 -0.1991 -2.0372 29 1 2.0423 -2.6462 0.2782 30 1 0.5527 -2.2816 1.1829 31 1 1.9592 -3.9846 2.3492 32 1 1.7719 -2.5015 3.3165 33 1 4.1586 -3.1885 1.5412 34 1 4.1292 -3.2571 3.3195 35 1 6.0396 -1.6987 1.9178 36 1 5.7393 -0.0673 2.5633 37 1 3.5269 1.6828 5.9327 38 1 8.0764 -1.7870 3.4444 39 1 7.8225 -1.6864 5.2684 40 1 6.1276 -3.5698 5.1365 41 1 6.3814 -3.6704 3.3123 42 1 3.8530 0.4358 1.3739 43 1 3.9993 -1.0592 0.4195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:05 Heat of formation + Delta-G solvation = 32.439654 kcal Electronic energy + Delta-G solvation = -20350.721420 eV Core-core repulsion = 17624.513805 eV Total energy + Delta-G solvation = -2726.207615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.19478 -37.15430 -35.15699 -32.10401 -31.93811 -29.94236 -28.49672 -26.77209 -25.00481 -23.46955 -22.52155 -21.24144 -20.33881 -18.97814 -18.67467 -16.38949 -16.02921 -15.42870 -15.11089 -14.55087 -14.17748 -13.82801 -13.72607 -13.27538 -13.08248 -12.97571 -12.65959 -12.53427 -12.23593 -11.86257 -11.81133 -11.34531 -11.01163 -10.72738 -10.55028 -10.45180 -10.33232 -10.27495 -10.05921 -9.74280 -9.55803 -9.26039 -9.03292 -8.65587 -8.49506 -8.11229 -7.28569 -5.96032 -3.83311 3.39374 3.49780 3.51495 4.48877 4.58783 4.61946 4.95369 4.99705 5.07230 5.29244 5.35217 5.44815 5.48893 5.57957 5.79823 5.85202 5.92203 5.92672 5.95075 6.00997 6.07738 6.13216 6.19396 6.23475 6.32013 6.35877 6.39800 6.57451 6.58872 6.64804 6.66002 6.81219 6.84077 6.91121 7.10837 7.19172 7.24488 7.44728 7.87139 8.02872 8.07527 8.68105 9.08562 9.74833 11.17021 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.008445 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.953364 B = 3314.812348 C = 3780.529813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.078 0.922 4 N -0.842 5.842 5 C -0.074 4.074 6 H 0.082 0.918 7 C -0.113 4.113 8 C -0.115 4.115 9 C 0.065 3.935 10 N -0.505 5.505 11 C 0.088 3.912 12 C 0.024 3.976 13 C -0.468 4.468 14 H 0.071 0.929 15 C 0.099 3.901 16 N -0.889 5.889 17 Si 0.882 3.118 18 H -0.272 1.272 19 H -0.307 1.307 20 H -0.271 1.271 21 C -0.214 4.214 22 C -0.195 4.195 23 C 0.062 3.938 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.334 0.666 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.013 0.987 34 H 0.086 0.914 35 H 0.013 0.987 36 H 0.062 0.938 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 -3.845 -12.900 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.096 0.904 4 N -0.372 5.372 5 C -0.093 4.093 6 H 0.101 0.899 7 C -0.150 4.150 8 C -0.153 4.153 9 C -0.063 4.063 10 N -0.229 5.229 11 C -0.039 4.039 12 C 0.022 3.978 13 C -0.504 4.504 14 H 0.089 0.911 15 C -0.104 4.104 16 N -0.526 5.526 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.236 1.236 20 H -0.197 1.197 21 C -0.253 4.253 22 C -0.232 4.232 23 C -0.066 4.066 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.488 -3.354 -12.122 13.355 hybrid contribution -0.202 0.278 -1.617 1.653 sum -4.691 -3.076 -13.740 14.840 Atomic orbital electron populations 1.22636 0.97933 1.01939 1.01935 1.21453 0.91773 0.98264 0.90714 0.90382 1.58944 1.67592 1.06469 1.04168 1.21169 0.96184 0.95453 0.96484 0.89944 1.21626 0.99412 0.95562 0.98442 1.21554 0.96151 0.98845 0.98718 1.22021 0.95083 0.89297 0.99943 1.61624 1.14009 1.09992 1.37238 1.21841 0.87008 0.99310 0.95786 1.19309 0.91545 0.93211 0.93685 1.20057 1.33396 0.96405 1.00527 0.91134 1.24708 0.93066 0.97962 0.94633 1.69977 1.27133 1.16216 1.39287 0.87069 0.80277 0.79163 0.82054 1.19870 1.23569 1.19711 1.23159 0.95106 1.06119 1.00891 1.22815 1.07202 0.92563 1.00633 1.22088 0.94176 0.99102 0.91247 0.91868 0.93262 0.92488 0.84816 0.85405 0.92404 0.92726 0.92556 0.90651 0.96873 0.89617 0.96862 0.92052 0.92983 0.91834 0.89751 0.90122 0.91482 0.91520 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 9.24 37.16 0.34 -1.64 16 2 C 0.09 1.14 3.12 -67.71 -0.21 0.93 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 N -0.84 -9.48 8.54 -4.67 -0.04 -9.52 16 5 C -0.07 -1.16 2.17 -90.54 -0.20 -1.36 16 6 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 7 C -0.11 -1.58 4.58 -26.61 -0.12 -1.70 16 8 C -0.11 -1.85 6.09 -26.65 -0.16 -2.01 16 9 C 0.06 1.20 5.22 -3.83 -0.02 1.18 16 10 N -0.51 -10.68 4.02 -234.66 -0.94 -11.63 16 11 C 0.09 1.96 3.73 -3.82 -0.01 1.95 16 12 C 0.02 0.57 0.92 -155.66 -0.14 0.43 16 13 C -0.47 -13.17 9.22 -34.43 -0.32 -13.49 16 14 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 15 C 0.10 2.86 5.30 -17.82 -0.09 2.77 16 16 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.88 22.40 24.00 -169.99 -4.08 18.32 16 18 H -0.27 -6.59 5.07 56.52 0.29 -6.30 16 19 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 20 H -0.27 -6.73 6.76 56.52 0.38 -6.35 16 21 C -0.21 -4.68 9.96 -26.69 -0.27 -4.94 16 22 C -0.19 -4.09 8.26 -26.70 -0.22 -4.31 16 23 C 0.06 1.16 4.63 -3.83 -0.02 1.14 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 27 H 0.34 3.52 6.98 -39.29 -0.27 3.24 16 28 H 0.33 3.09 9.07 -39.29 -0.36 2.74 16 29 H 0.06 0.76 6.49 -51.93 -0.34 0.42 16 30 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 1.73 5.88 -51.93 -0.31 1.42 16 35 H 0.01 0.28 8.04 -51.93 -0.42 -0.14 16 36 H 0.06 1.45 2.76 -51.93 -0.14 1.31 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 41 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.07 1.37 6.01 -51.93 -0.31 1.06 16 43 H 0.03 0.63 7.73 -51.93 -0.40 0.23 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -29.68 314.07 -8.58 -38.26 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.58 Total: 7.15 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.44 Total: -21.05 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.21 Total: -47.42 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.08 Total: 18.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.68 -8.58 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.704 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds