Wall clock time and date at job start Mon Mar 30 2020 04:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46843 * 111.00114 * 170.78523 * 12 2 1 14 14 C 1.53049 * 109.54959 * 185.83995 * 13 12 2 15 15 C 1.53126 * 109.25981 * 300.80260 * 14 13 12 16 16 C 1.53072 * 109.14237 * 57.60924 * 15 14 13 17 17 C 1.53055 * 109.46491 * 182.32405 * 16 15 14 18 18 C 1.53130 * 109.14797 * 297.66969 * 17 16 15 19 19 C 1.53033 * 109.27731 * 302.41994 * 18 17 16 20 20 N 1.46849 * 109.55690 * 59.16774 * 19 18 17 21 21 C 1.46860 * 111.18271 * 298.25587 * 20 19 18 22 22 C 1.46861 * 110.99945 * 295.00087 * 12 2 1 23 23 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 24 24 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 25 25 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46133 * 305.86050 * 13 12 2 28 28 H 1.08991 * 109.45721 * 65.81966 * 13 12 2 29 29 H 1.09004 * 109.50022 * 180.87031 * 14 13 12 30 30 H 1.09002 * 109.53862 * 60.76488 * 14 13 12 31 31 H 1.09000 * 109.52867 * 297.70652 * 15 14 13 32 32 H 1.09001 * 109.52670 * 177.50660 * 15 14 13 33 33 H 1.09013 * 109.52209 * 57.57024 * 17 16 15 34 34 H 1.09000 * 109.52590 * 177.76470 * 17 16 15 35 35 H 1.09004 * 109.50824 * 182.47842 * 18 17 16 36 36 H 1.09008 * 109.50360 * 62.36221 * 18 17 16 37 37 H 1.08997 * 109.45581 * 299.14243 * 19 18 17 38 38 H 1.08995 * 109.44051 * 179.18415 * 19 18 17 39 39 H 1.00896 * 111.00147 * 174.17163 * 20 19 18 40 40 H 1.09005 * 109.46765 * 301.68627 * 21 20 19 41 41 H 1.08997 * 109.46887 * 181.70004 * 21 20 19 42 42 H 1.08999 * 109.46477 * 294.25268 * 22 12 2 43 43 H 1.08998 * 109.46485 * 54.23103 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 3.4709 -0.9052 1.1285 14 6 3.9229 -1.7536 2.3195 15 6 3.5570 -1.0335 3.6204 16 6 2.0476 -0.7804 3.6465 17 6 1.6817 -0.0094 4.9171 18 6 2.0325 -0.8614 6.1402 19 6 1.2904 -2.1970 6.0552 20 7 1.6759 -2.8961 4.8227 21 6 1.3055 -2.1182 3.6334 22 6 1.6488 0.0387 2.4177 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9030 -0.5275 -4.4376 27 1 3.7175 -1.4214 0.2007 28 1 3.9807 0.0578 1.1546 29 1 5.0024 -1.8980 2.2746 30 1 3.4244 -2.7224 2.2870 31 1 4.0869 -0.0824 3.6718 32 1 3.8371 -1.6542 4.4716 33 1 2.2427 0.9247 4.9507 34 1 0.6132 0.2061 4.9175 35 1 1.7339 -0.3362 7.0474 36 1 3.1072 -1.0429 6.1611 37 1 0.2157 -2.0154 6.0486 38 1 1.5495 -2.8115 6.9173 39 1 1.2729 -3.8205 4.7901 40 1 0.2305 -1.9373 3.6379 41 1 1.5763 -2.6749 2.7363 42 1 2.1661 0.9980 2.4372 43 1 0.5719 0.2066 2.4269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228105492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:25 Heat of formation + Delta-G solvation = 3.093971 kcal Electronic energy + Delta-G solvation = -20369.093528 eV Core-core repulsion = 17641.613388 eV Total energy + Delta-G solvation = -2727.480139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97049 -36.99896 -34.03433 -32.16753 -31.82645 -30.72829 -29.20056 -26.21144 -24.77996 -23.66161 -23.65522 -21.69462 -20.61724 -19.26961 -17.76434 -16.80966 -16.47466 -15.29172 -14.63309 -14.44684 -14.32120 -13.95616 -13.54576 -13.45912 -13.33634 -12.93559 -12.69213 -12.53576 -12.26989 -11.84545 -11.65496 -11.51470 -11.25015 -10.80706 -10.72449 -10.70858 -10.53117 -10.31703 -10.04054 -9.99501 -9.72078 -9.55085 -9.37921 -8.85393 -8.54663 -8.28272 -7.25928 -6.06035 -4.04592 3.26913 3.37096 3.39047 4.33040 4.40456 4.66030 4.91993 4.97720 5.09814 5.21354 5.27274 5.40925 5.50918 5.61239 5.67544 5.74301 5.87544 5.89281 5.95741 6.05294 6.07892 6.10458 6.17746 6.23907 6.30287 6.36304 6.42013 6.46300 6.54754 6.58148 6.69312 6.73055 6.82785 6.95491 7.06163 7.18835 7.35288 7.49948 7.61810 8.01914 8.18462 8.68421 9.00132 9.56245 11.06384 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.006155 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.195911 B = 4548.255561 C = 4798.906039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.182 3.818 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.520 5.520 13 C 0.061 3.939 14 C -0.116 4.116 15 C -0.098 4.098 16 C -0.047 4.047 17 C -0.112 4.112 18 C -0.116 4.116 19 C 0.058 3.942 20 N -0.689 5.689 21 C 0.076 3.924 22 C 0.060 3.940 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.263 0.737 27 H 0.093 0.907 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.067 0.933 39 H 0.339 0.661 40 H 0.022 0.978 41 H 0.096 0.904 42 H 0.022 0.978 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -0.306 17.656 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.074 3.926 3 H 0.013 0.987 4 C -0.545 4.545 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.244 5.244 13 C -0.067 4.067 14 C -0.154 4.154 15 C -0.136 4.136 16 C -0.048 4.048 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.071 4.071 20 N -0.320 5.320 21 C -0.052 4.052 22 C -0.069 4.069 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.040 0.960 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.514 -0.528 17.470 17.485 hybrid contribution -1.342 1.628 -0.315 2.134 sum -1.857 1.100 17.155 17.290 Atomic orbital electron populations 1.22155 0.98670 1.01174 0.97980 1.19643 0.91373 0.92619 0.88949 0.98709 1.21050 1.31861 1.13582 0.87965 0.89691 1.24924 0.95800 0.96549 0.95857 1.69880 1.45788 1.40266 0.97857 0.86887 0.80775 0.83922 0.76739 1.20605 1.22568 1.19522 1.61813 1.12911 1.48429 1.01278 1.22057 0.87788 0.97827 0.99020 1.21646 0.99459 0.99916 0.94339 1.21522 0.94055 0.99504 0.98476 1.20515 0.96232 0.94599 0.93439 1.21625 1.00707 0.98199 0.94487 1.21589 1.01323 0.95081 0.97374 1.21877 0.96742 0.95595 0.92905 1.60289 1.64235 1.05479 1.01973 1.21910 0.95986 0.94443 0.92888 1.22112 1.00073 0.94201 0.90494 0.95443 0.94231 0.92147 0.92664 0.88866 0.96533 0.92732 0.91163 0.93635 0.91083 0.92163 0.92544 0.92273 0.91005 0.95793 0.91490 0.84413 0.95965 0.88613 0.95992 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.58 37.16 0.32 -2.84 16 2 C 0.18 4.32 1.67 -68.86 -0.11 4.21 16 3 H 0.00 -0.11 7.19 -51.93 -0.37 -0.49 16 4 C -0.51 -14.03 8.45 -34.44 -0.29 -14.32 16 5 H 0.09 2.53 6.28 -52.49 -0.33 2.20 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 8 Si 0.89 22.11 24.37 -169.99 -4.14 17.97 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 N -0.52 -10.62 3.82 -228.11 -0.87 -11.49 16 13 C 0.06 1.20 5.15 -3.83 -0.02 1.18 16 14 C -0.12 -1.87 5.74 -26.64 -0.15 -2.02 16 15 C -0.10 -1.42 4.30 -26.63 -0.11 -1.54 16 16 C -0.05 -0.68 0.51 -154.46 -0.08 -0.76 16 17 C -0.11 -1.38 4.79 -26.64 -0.13 -1.51 16 18 C -0.12 -1.24 5.74 -26.65 -0.15 -1.39 16 19 C 0.06 0.62 6.55 -3.83 -0.03 0.59 16 20 N -0.69 -8.26 6.09 -113.83 -0.69 -8.95 16 21 C 0.08 1.09 4.84 -3.85 -0.02 1.07 16 22 C 0.06 1.05 4.01 -3.86 -0.02 1.03 16 23 H 0.03 0.53 6.41 -51.93 -0.33 0.19 16 24 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.09 2.08 5.74 -51.93 -0.30 1.78 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.17 6.57 -51.93 -0.34 0.83 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.99 6.07 -51.93 -0.32 0.68 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.80 6.64 -51.92 -0.34 0.46 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.34 3.57 8.90 -39.29 -0.35 3.22 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 1.57 6.00 -51.93 -0.31 1.26 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 1.16 6.18 -51.93 -0.32 0.84 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -28.92 301.65 -8.60 -37.51 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.32 Total: 1.33 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.89 Total: -14.36 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.79 Total: -46.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.92 -8.60 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228105492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.606 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds