Wall clock time and date at job start Mon Mar 30 2020 04:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46843 * 111.00114 * 170.78523 * 12 2 1 14 14 C 1.53049 * 109.54959 * 185.83995 * 13 12 2 15 15 C 1.53126 * 109.25981 * 300.80260 * 14 13 12 16 16 C 1.53072 * 109.14237 * 57.60924 * 15 14 13 17 17 C 1.53055 * 109.46491 * 182.32405 * 16 15 14 18 18 C 1.53130 * 109.14797 * 297.66969 * 17 16 15 19 19 C 1.53033 * 109.27731 * 302.41994 * 18 17 16 20 20 N 1.46849 * 109.55690 * 59.16774 * 19 18 17 21 21 C 1.46860 * 111.18271 * 298.25587 * 20 19 18 22 22 C 1.46861 * 110.99945 * 295.00087 * 12 2 1 23 23 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 24 24 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 25 25 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46133 * 305.86050 * 13 12 2 28 28 H 1.08991 * 109.45721 * 65.81966 * 13 12 2 29 29 H 1.09004 * 109.50022 * 180.87031 * 14 13 12 30 30 H 1.09002 * 109.53862 * 60.76488 * 14 13 12 31 31 H 1.09000 * 109.52867 * 297.70652 * 15 14 13 32 32 H 1.09001 * 109.52670 * 177.50660 * 15 14 13 33 33 H 1.09013 * 109.52209 * 57.57024 * 17 16 15 34 34 H 1.09000 * 109.52590 * 177.76470 * 17 16 15 35 35 H 1.09004 * 109.50824 * 182.47842 * 18 17 16 36 36 H 1.09008 * 109.50360 * 62.36221 * 18 17 16 37 37 H 1.08997 * 109.45581 * 299.14243 * 19 18 17 38 38 H 1.08995 * 109.44051 * 179.18415 * 19 18 17 39 39 H 1.00896 * 111.00147 * 174.17163 * 20 19 18 40 40 H 1.09005 * 109.46765 * 301.68627 * 21 20 19 41 41 H 1.08997 * 109.46887 * 181.70004 * 21 20 19 42 42 H 1.08999 * 109.46477 * 294.25268 * 22 12 2 43 43 H 1.08998 * 109.46485 * 54.23103 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 3.4709 -0.9052 1.1285 14 6 3.9229 -1.7536 2.3195 15 6 3.5570 -1.0335 3.6204 16 6 2.0476 -0.7804 3.6465 17 6 1.6817 -0.0094 4.9171 18 6 2.0325 -0.8614 6.1402 19 6 1.2904 -2.1970 6.0552 20 7 1.6759 -2.8961 4.8227 21 6 1.3055 -2.1182 3.6334 22 6 1.6488 0.0387 2.4177 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9030 -0.5275 -4.4376 27 1 3.7175 -1.4214 0.2007 28 1 3.9807 0.0578 1.1546 29 1 5.0024 -1.8980 2.2746 30 1 3.4244 -2.7224 2.2870 31 1 4.0869 -0.0824 3.6718 32 1 3.8371 -1.6542 4.4716 33 1 2.2427 0.9247 4.9507 34 1 0.6132 0.2061 4.9175 35 1 1.7339 -0.3362 7.0474 36 1 3.1072 -1.0429 6.1611 37 1 0.2157 -2.0154 6.0486 38 1 1.5495 -2.8115 6.9173 39 1 1.2729 -3.8205 4.7901 40 1 0.2305 -1.9373 3.6379 41 1 1.5763 -2.6749 2.7363 42 1 2.1661 0.9980 2.4372 43 1 0.5719 0.2066 2.4269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228105492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:25 Heat of formation + Delta-G solvation = -17.235304 kcal Electronic energy + Delta-G solvation = -20369.975071 eV Core-core repulsion = 17641.613388 eV Total energy + Delta-G solvation = -2728.361683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21193 -38.40988 -35.63786 -33.91189 -33.14800 -31.86843 -30.90042 -27.75569 -26.43407 -25.18170 -24.66785 -22.93984 -22.09121 -20.84607 -19.03739 -18.74272 -17.70678 -16.86491 -16.32178 -15.75563 -15.45166 -15.20252 -15.07330 -14.90718 -14.59797 -14.55137 -14.17897 -14.01222 -13.62592 -13.21681 -13.16397 -12.88990 -12.59272 -12.51380 -12.41514 -12.21622 -11.79370 -11.71298 -11.50070 -11.44732 -11.29103 -10.97246 -10.86338 -10.71311 -10.61760 -9.23724 -8.94217 -8.28324 -6.31208 1.27808 1.32937 1.42686 2.30457 3.04344 3.19451 3.37697 3.87239 3.91244 3.94142 4.24431 4.26481 4.35060 4.44526 4.48778 4.53360 4.61715 4.67117 4.70846 4.74522 4.77306 4.82716 4.86035 4.94063 4.97626 5.03516 5.10186 5.13436 5.18630 5.24657 5.27439 5.37851 5.42791 5.49313 5.59468 5.66204 5.68540 6.05828 6.21232 6.43214 6.61388 6.74729 6.77363 7.33712 8.87450 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036583 B = 0.006155 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.195911 B = 4548.255561 C = 4798.906039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.183 3.817 3 H -0.017 1.017 4 C -0.507 4.507 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.265 1.265 10 H -0.298 1.298 11 H -0.256 1.256 12 N -0.524 5.524 13 C 0.065 3.935 14 C -0.106 4.106 15 C -0.089 4.089 16 C -0.044 4.044 17 C -0.109 4.109 18 C -0.112 4.112 19 C 0.057 3.943 20 N -0.691 5.691 21 C 0.085 3.915 22 C 0.060 3.940 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.086 0.914 39 H 0.347 0.653 40 H 0.017 0.983 41 H 0.069 0.931 42 H 0.019 0.981 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 0.685 20.605 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.000 1.000 4 C -0.545 4.545 5 H 0.066 0.934 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.226 1.226 11 H -0.180 1.180 12 N -0.248 5.248 13 C -0.064 4.064 14 C -0.144 4.144 15 C -0.127 4.127 16 C -0.045 4.045 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.072 4.072 20 N -0.322 5.322 21 C -0.045 4.045 22 C -0.068 4.068 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.104 0.896 39 H 0.165 0.835 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.546 0.454 20.456 20.519 hybrid contribution -0.947 1.235 -1.205 1.969 sum -2.493 1.689 19.251 19.485 Atomic orbital electron populations 1.22040 0.96878 1.01322 0.99184 1.19500 0.92721 0.91415 0.88851 0.99999 1.21292 1.30817 1.12450 0.89934 0.93407 1.25733 0.97366 0.99755 0.95464 1.70025 1.47805 1.42404 0.98490 0.85895 0.79499 0.80250 0.76959 1.19056 1.22628 1.18049 1.61787 1.13101 1.48560 1.01387 1.21970 0.87671 0.97587 0.99130 1.21560 1.00138 0.98989 0.93709 1.21466 0.94138 0.99557 0.97527 1.20497 0.96138 0.94646 0.93230 1.21602 1.00995 0.98333 0.93778 1.21592 1.01188 0.94927 0.97309 1.21971 0.96881 0.95803 0.92559 1.60258 1.64403 1.05834 1.01745 1.21683 0.95531 0.94218 0.93046 1.22225 1.00236 0.94289 0.90091 0.92217 0.94898 0.92591 0.92575 0.92650 0.97318 0.91378 0.91767 0.93346 0.89679 0.91720 0.92229 0.90114 0.91232 0.95608 0.89572 0.83473 0.96465 0.91309 0.96321 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 8.58 71.98 0.62 -5.25 16 2 C 0.18 8.76 1.67 44.17 0.07 8.83 16 3 H -0.02 -0.87 7.19 -2.39 -0.02 -0.89 16 4 C -0.51 -29.09 8.45 25.60 0.22 -28.87 16 5 H 0.05 3.04 6.28 -2.92 -0.02 3.02 16 6 C 0.01 0.83 5.45 84.65 0.46 1.29 16 7 N -0.95 -59.50 13.96 21.45 0.30 -59.21 16 8 Si 0.95 45.67 24.37 68.60 1.67 47.34 16 9 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.26 -11.69 6.53 99.48 0.65 -11.04 16 12 N -0.52 -21.53 3.82 -875.62 -3.35 -24.88 16 13 C 0.06 2.62 5.15 86.33 0.44 3.06 16 14 C -0.11 -3.38 5.74 30.65 0.18 -3.21 16 15 C -0.09 -2.41 4.30 30.66 0.13 -2.28 16 16 C -0.04 -1.19 0.51 -52.15 -0.03 -1.22 16 17 C -0.11 -2.33 4.79 30.66 0.15 -2.19 16 18 C -0.11 -1.96 5.74 30.65 0.18 -1.78 16 19 C 0.06 0.99 6.55 86.32 0.57 1.56 16 20 N -0.69 -14.81 6.09 -514.06 -3.13 -17.94 16 21 C 0.08 2.28 4.84 86.31 0.42 2.70 16 22 C 0.06 2.01 4.01 86.30 0.35 2.35 16 23 H 0.06 2.15 6.41 -2.39 -0.02 2.14 16 24 H 0.03 1.44 3.27 -2.39 -0.01 1.44 16 25 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.06 2.64 5.74 -2.39 -0.01 2.63 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 2.14 6.57 -2.39 -0.02 2.12 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.12 6.07 -2.39 -0.01 2.10 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.27 6.64 -2.38 -0.02 1.26 16 37 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.35 6.54 8.90 -89.70 -0.80 5.74 16 40 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.07 2.23 6.00 -2.39 -0.01 2.22 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 2.31 6.18 -2.39 -0.01 2.29 16 Total: -1.00 -63.85 301.65 -0.65 -64.50 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.11 Total: 15.19 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.75 Total: -25.00 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -6.18 Total: -102.02 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -63.85 -0.65 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228105492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.264 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds