Wall clock time and date at job start Mon Mar 30 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47651 * 2 1 4 4 C 1.50707 * 109.46955 * 119.99308 * 2 1 3 5 5 H 1.08003 * 119.99689 * 119.99524 * 4 2 1 6 6 C 1.37873 * 120.00165 * 300.00468 * 4 2 1 7 7 N 1.31517 * 120.00317 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47070 * 90.00398 * 8 6 4 10 10 H 1.48504 * 109.46982 * 210.00090 * 8 6 4 11 11 H 1.48497 * 109.47395 * 330.00545 * 8 6 4 12 12 N 1.46904 * 109.47465 * 239.99089 * 2 1 3 13 13 C 1.48531 * 111.00024 * 187.40101 * 12 2 1 14 14 C 1.55107 * 103.27947 * 200.33671 * 13 12 2 15 15 C 1.54588 * 102.84678 * 37.30733 * 14 13 12 16 16 H 1.08998 * 110.31265 * 97.11727 * 15 14 13 17 17 C 1.53004 * 110.30715 * 219.18689 * 15 14 13 18 18 N 1.46902 * 109.47238 * 179.86670 * 17 15 14 19 19 C 1.48526 * 111.00049 * 58.29512 * 18 17 15 20 20 C 1.54940 * 103.22649 * 159.72417 * 19 18 17 21 21 C 1.54604 * 102.91817 * 322.58995 * 20 19 18 22 22 C 1.47894 * 111.00040 * 175.69912 * 18 17 15 23 23 C 1.47903 * 110.99404 * 70.00398 * 12 2 1 24 24 H 1.09002 * 109.47651 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47341 * 300.01094 * 1 2 3 26 26 H 1.09008 * 109.46901 * 60.00091 * 1 2 3 27 27 H 0.97000 * 120.00059 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.66677 * 318.71602 * 13 12 2 29 29 H 1.08994 * 110.66760 * 81.68103 * 13 12 2 30 30 H 1.08995 * 110.70784 * 278.99059 * 14 13 12 31 31 H 1.09004 * 110.80891 * 155.66275 * 14 13 12 32 32 H 1.08999 * 109.47094 * 299.86095 * 17 15 14 33 33 H 1.08994 * 109.47350 * 59.86477 * 17 15 14 34 34 H 1.08995 * 110.67383 * 278.15819 * 19 18 17 35 35 H 1.09000 * 110.66869 * 41.29509 * 19 18 17 36 36 H 1.09000 * 110.72913 * 204.23344 * 20 19 18 37 37 H 1.08997 * 110.72825 * 80.93951 * 20 19 18 38 38 H 1.08997 * 110.30639 * 263.03462 * 21 20 19 39 39 H 1.09002 * 110.39178 * 140.92176 * 21 20 19 40 40 H 1.09002 * 109.92219 * 333.50717 * 22 18 17 41 41 H 1.09005 * 109.92346 * 94.60321 * 22 18 17 42 42 H 1.08998 * 109.91995 * 26.49427 * 23 12 2 43 43 H 1.08998 * 110.08078 * 265.29077 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1370 -0.8593 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8023 0.8746 2.6992 10 1 0.9769 1.9956 3.9069 11 1 0.8488 2.1773 1.4921 12 7 2.0197 -0.6927 -1.1993 13 6 3.4936 -0.8691 -1.1476 14 6 3.8772 -1.1000 -2.6326 15 6 2.9214 -0.1472 -3.3866 16 1 3.4269 0.7902 -3.6187 17 6 2.4157 -0.8087 -4.6703 18 7 1.5078 0.1101 -5.3698 19 6 2.1892 1.3903 -5.6905 20 6 1.3201 1.9786 -6.8304 21 6 0.9235 0.7256 -7.6446 22 6 1.0787 -0.4546 -6.6676 23 6 1.7512 0.1024 -2.4172 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.9029 -0.5276 4.4377 28 1 3.9753 0.0297 -0.7624 29 1 3.7563 -1.7351 -0.5402 30 1 3.6963 -2.1355 -2.9209 31 1 4.9166 -0.8247 -2.8114 32 1 3.2621 -1.0442 -5.3154 33 1 1.8828 -1.7261 -4.4206 34 1 2.1893 2.0534 -4.8255 35 1 3.2064 1.2084 -6.0372 36 1 1.9017 2.6681 -7.4424 37 1 0.4360 2.4716 -6.4262 38 1 1.5914 0.6014 -8.4970 39 1 -0.1098 0.8037 -7.9827 40 1 1.8337 -1.1474 -7.0391 41 1 0.1261 -0.9715 -6.5510 42 1 1.6974 1.1614 -2.1650 43 1 0.8152 -0.2182 -2.8746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246160995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:27 Heat of formation + Delta-G solvation = 12.071704 kcal Electronic energy + Delta-G solvation = -19500.437531 eV Core-core repulsion = 16773.346695 eV Total energy + Delta-G solvation = -2727.090836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42054 -37.97426 -34.36061 -32.39963 -31.21357 -29.16303 -28.45009 -28.08533 -25.20030 -24.13877 -21.80518 -21.18318 -20.73290 -19.72485 -18.98229 -16.76777 -16.18285 -15.95356 -15.51408 -14.69360 -14.39796 -14.07648 -13.51670 -13.31818 -13.06748 -12.67476 -12.55300 -12.42365 -12.11950 -12.05509 -11.55145 -11.52571 -11.28359 -11.21877 -10.95305 -10.75302 -10.58482 -10.53568 -10.36039 -10.27909 -10.12624 -9.95539 -9.39800 -8.92222 -8.52523 -8.42547 -7.34195 -6.03247 -4.01533 3.30491 3.39955 3.42165 3.92926 4.43773 4.50797 4.56195 4.78446 4.92854 5.07894 5.12250 5.15587 5.24821 5.31384 5.36402 5.48930 5.60512 5.64011 5.67552 5.74488 5.83038 5.87199 5.94777 5.98238 6.04353 6.14587 6.30235 6.40235 6.44547 6.55184 6.59462 6.71142 6.75166 6.83721 6.87625 6.92303 7.03771 7.35864 7.61118 8.01109 8.11088 8.69774 9.02907 9.59521 11.09614 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.005015 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.129143 B = 5582.011063 C = 6032.784351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.174 3.826 3 H -0.003 1.003 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.505 5.505 13 C 0.056 3.944 14 C -0.122 4.122 15 C -0.096 4.096 16 H 0.066 0.934 17 C 0.061 3.939 18 N -0.514 5.514 19 C 0.034 3.966 20 C -0.124 4.124 21 C -0.130 4.130 22 C 0.035 3.965 23 C 0.049 3.951 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.263 0.737 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 3.648 -20.720 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.066 3.934 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.229 5.229 13 C -0.072 4.072 14 C -0.161 4.161 15 C -0.115 4.115 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.238 5.238 19 C -0.094 4.094 20 C -0.162 4.162 21 C -0.169 4.169 22 C -0.093 4.093 23 C -0.079 4.079 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.327 3.216 -20.176 20.433 hybrid contribution 0.461 1.468 -0.174 1.549 sum 0.134 4.684 -20.350 20.882 Atomic orbital electron populations 1.22076 0.98432 1.01193 0.98024 1.19864 0.91774 0.92518 0.89283 0.98513 1.21037 1.31796 1.13551 0.88063 0.90046 1.24926 0.95796 0.96614 0.95830 1.69886 1.45895 1.40321 0.97839 0.86870 0.80842 0.83857 0.76676 1.20518 1.22592 1.19503 1.64712 1.11530 1.44707 1.01973 1.22959 0.89209 1.01121 0.93890 1.22622 0.97596 0.99393 0.96448 1.22055 0.96690 0.98344 0.94442 0.91594 1.22361 0.93886 0.96029 0.94470 1.64771 1.36811 1.03812 1.18436 1.23231 0.95668 0.92316 0.98179 1.22484 1.00137 0.97074 0.96546 1.22387 1.01859 0.94839 0.97780 1.22848 1.00918 0.96543 0.88984 1.22804 0.98000 0.95766 0.91335 0.92184 0.94342 0.95339 0.92697 0.94359 0.90003 0.91184 0.92033 0.95203 0.90053 0.89923 0.94021 0.91351 0.90712 0.91831 0.91127 0.94058 0.90373 0.95278 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.73 37.15 0.32 -2.92 16 2 C 0.17 4.28 1.44 -68.86 -0.10 4.18 16 3 H 0.00 -0.07 6.87 -51.93 -0.36 -0.42 16 4 C -0.51 -14.42 8.59 -34.44 -0.30 -14.72 16 5 H 0.08 2.50 6.76 -52.48 -0.35 2.14 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.89 22.50 24.37 -169.99 -4.14 18.36 16 9 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.27 -6.64 6.53 56.52 0.37 -6.28 16 12 N -0.50 -10.83 5.10 -223.77 -1.14 -11.97 16 13 C 0.06 1.11 5.55 -1.81 -0.01 1.10 16 14 C -0.12 -1.84 6.62 -24.78 -0.16 -2.01 16 15 C -0.10 -1.40 2.76 -89.26 -0.25 -1.65 16 16 H 0.07 0.92 6.85 -51.93 -0.36 0.57 16 17 C 0.06 0.77 3.96 -3.82 -0.02 0.76 16 18 N -0.51 -6.28 4.92 -230.46 -1.13 -7.41 16 19 C 0.03 0.37 5.35 -1.90 -0.01 0.36 16 20 C -0.12 -1.12 7.06 -24.86 -0.18 -1.30 16 21 C -0.13 -1.11 6.93 -25.37 -0.18 -1.28 16 22 C 0.04 0.36 6.70 -2.76 -0.02 0.34 16 23 C 0.05 0.89 5.26 -2.75 -0.01 0.88 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 26 H 0.03 0.58 7.52 -51.92 -0.39 0.19 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.04 0.79 8.02 -51.93 -0.42 0.37 16 29 H 0.08 1.73 7.14 -51.93 -0.37 1.35 16 30 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.35 7.97 -51.93 -0.41 -0.06 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.96 7.62 -51.93 -0.40 0.56 16 35 H 0.04 0.43 8.02 -51.93 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 43 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -30.29 317.33 -9.65 -39.94 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.79 Total: -2.35 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.00 Total: -14.32 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -1.50 Total: -46.41 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.29 -9.65 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246160995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.013 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds