Wall clock time and date at job start Mon Mar 30 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47651 * 2 1 4 4 C 1.50707 * 109.46955 * 119.99308 * 2 1 3 5 5 H 1.08003 * 119.99689 * 119.99524 * 4 2 1 6 6 C 1.37873 * 120.00165 * 300.00468 * 4 2 1 7 7 N 1.31517 * 120.00317 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47070 * 90.00398 * 8 6 4 10 10 H 1.48504 * 109.46982 * 210.00090 * 8 6 4 11 11 H 1.48497 * 109.47395 * 330.00545 * 8 6 4 12 12 N 1.46904 * 109.47465 * 239.99089 * 2 1 3 13 13 C 1.48531 * 111.00024 * 187.40101 * 12 2 1 14 14 C 1.55107 * 103.27947 * 200.33671 * 13 12 2 15 15 C 1.54588 * 102.84678 * 37.30733 * 14 13 12 16 16 H 1.08998 * 110.31265 * 97.11727 * 15 14 13 17 17 C 1.53004 * 110.30715 * 219.18689 * 15 14 13 18 18 N 1.46902 * 109.47238 * 179.86670 * 17 15 14 19 19 C 1.48526 * 111.00049 * 58.29512 * 18 17 15 20 20 C 1.54940 * 103.22649 * 159.72417 * 19 18 17 21 21 C 1.54604 * 102.91817 * 322.58995 * 20 19 18 22 22 C 1.47894 * 111.00040 * 175.69912 * 18 17 15 23 23 C 1.47903 * 110.99404 * 70.00398 * 12 2 1 24 24 H 1.09002 * 109.47651 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47341 * 300.01094 * 1 2 3 26 26 H 1.09008 * 109.46901 * 60.00091 * 1 2 3 27 27 H 0.97000 * 120.00059 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.66677 * 318.71602 * 13 12 2 29 29 H 1.08994 * 110.66760 * 81.68103 * 13 12 2 30 30 H 1.08995 * 110.70784 * 278.99059 * 14 13 12 31 31 H 1.09004 * 110.80891 * 155.66275 * 14 13 12 32 32 H 1.08999 * 109.47094 * 299.86095 * 17 15 14 33 33 H 1.08994 * 109.47350 * 59.86477 * 17 15 14 34 34 H 1.08995 * 110.67383 * 278.15819 * 19 18 17 35 35 H 1.09000 * 110.66869 * 41.29509 * 19 18 17 36 36 H 1.09000 * 110.72913 * 204.23344 * 20 19 18 37 37 H 1.08997 * 110.72825 * 80.93951 * 20 19 18 38 38 H 1.08997 * 110.30639 * 263.03462 * 21 20 19 39 39 H 1.09002 * 110.39178 * 140.92176 * 21 20 19 40 40 H 1.09002 * 109.92219 * 333.50717 * 22 18 17 41 41 H 1.09005 * 109.92346 * 94.60321 * 22 18 17 42 42 H 1.08998 * 109.91995 * 26.49427 * 23 12 2 43 43 H 1.08998 * 110.08078 * 265.29077 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 2.1370 -0.8593 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8023 0.8746 2.6992 10 1 0.9769 1.9956 3.9069 11 1 0.8488 2.1773 1.4921 12 7 2.0197 -0.6927 -1.1993 13 6 3.4936 -0.8691 -1.1476 14 6 3.8772 -1.1000 -2.6326 15 6 2.9214 -0.1472 -3.3866 16 1 3.4269 0.7902 -3.6187 17 6 2.4157 -0.8087 -4.6703 18 7 1.5078 0.1101 -5.3698 19 6 2.1892 1.3903 -5.6905 20 6 1.3201 1.9786 -6.8304 21 6 0.9235 0.7256 -7.6446 22 6 1.0787 -0.4546 -6.6676 23 6 1.7512 0.1024 -2.4172 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.9029 -0.5276 4.4377 28 1 3.9753 0.0297 -0.7624 29 1 3.7563 -1.7351 -0.5402 30 1 3.6963 -2.1355 -2.9209 31 1 4.9166 -0.8247 -2.8114 32 1 3.2621 -1.0442 -5.3154 33 1 1.8828 -1.7261 -4.4206 34 1 2.1893 2.0534 -4.8255 35 1 3.2064 1.2084 -6.0372 36 1 1.9017 2.6681 -7.4424 37 1 0.4360 2.4716 -6.4262 38 1 1.5914 0.6014 -8.4970 39 1 -0.1098 0.8037 -7.9827 40 1 1.8337 -1.1474 -7.0391 41 1 0.1261 -0.9715 -6.5510 42 1 1.6974 1.1614 -2.1650 43 1 0.8152 -0.2182 -2.8746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246160995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:27 Heat of formation + Delta-G solvation = -9.399870 kcal Electronic energy + Delta-G solvation = -19501.368608 eV Core-core repulsion = 16773.346695 eV Total energy + Delta-G solvation = -2728.021913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55552 -39.22524 -36.02850 -34.07034 -32.75369 -30.16262 -29.79763 -29.43808 -27.07636 -25.49243 -23.21932 -22.19286 -21.68922 -21.31638 -20.31574 -18.84117 -17.41352 -17.07270 -16.70527 -16.17937 -15.98525 -15.16884 -15.11948 -14.66918 -14.45192 -14.27336 -14.04690 -13.77049 -13.46703 -13.27489 -13.03081 -12.77841 -12.51236 -12.38887 -12.21752 -12.08619 -12.02031 -11.98259 -11.82561 -11.54549 -11.42190 -11.35370 -11.32995 -10.98965 -10.74355 -9.29066 -9.07983 -8.29930 -6.33078 1.28414 1.32639 1.43027 2.30121 3.03363 3.05508 3.36148 3.70848 3.79207 3.82399 3.93244 4.05444 4.17085 4.39581 4.46236 4.49505 4.52111 4.55288 4.65382 4.67770 4.72474 4.77925 4.79682 4.85015 4.92158 4.95808 5.01219 5.04213 5.08140 5.11003 5.20422 5.22274 5.26430 5.35635 5.37740 5.48446 5.63857 6.02253 6.04381 6.14430 6.29827 6.67059 6.73211 7.32251 8.86379 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.005015 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.129143 B = 5582.011063 C = 6032.784351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.177 3.823 3 H -0.013 1.013 4 C -0.509 4.509 5 H 0.043 0.957 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.296 1.296 11 H -0.256 1.256 12 N -0.519 5.519 13 C 0.052 3.948 14 C -0.107 4.107 15 C -0.086 4.086 16 H 0.078 0.922 17 C 0.069 3.931 18 N -0.534 5.534 19 C 0.031 3.969 20 C -0.122 4.122 21 C -0.126 4.126 22 C 0.032 3.968 23 C 0.054 3.946 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.266 0.734 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 4.937 -23.392 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.061 0.939 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.223 1.223 11 H -0.181 1.181 12 N -0.243 5.243 13 C -0.076 4.076 14 C -0.146 4.146 15 C -0.105 4.105 16 H 0.096 0.904 17 C -0.059 4.059 18 N -0.258 5.258 19 C -0.096 4.096 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.095 4.095 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.874 4.502 -22.880 23.335 hybrid contribution 0.689 0.990 0.643 1.367 sum -0.185 5.492 -22.237 22.906 Atomic orbital electron populations 1.21976 0.96948 1.01190 0.99106 1.19701 0.92887 0.91445 0.89114 0.99579 1.21255 1.30976 1.12460 0.90080 0.93910 1.25744 0.97292 0.99852 0.95381 1.70027 1.47747 1.42411 0.98513 0.85869 0.79476 0.80112 0.77036 1.19033 1.22314 1.18078 1.64637 1.12514 1.45135 1.02049 1.22934 0.88432 0.99268 0.96984 1.22550 0.99205 1.00217 0.92621 1.21980 0.95117 0.98935 0.94462 0.90411 1.22200 0.94489 0.95475 0.93738 1.64730 1.36992 1.04313 1.19774 1.23257 0.96359 0.91608 0.98425 1.22480 0.99784 0.97514 0.96184 1.22383 1.02701 0.93675 0.97648 1.22898 1.00837 0.97312 0.88473 1.22792 0.99572 0.94627 0.90430 0.92776 0.94815 0.92554 0.92487 0.95923 0.92631 0.90341 0.89459 0.93494 0.91052 0.91090 0.93287 0.89690 0.91384 0.90431 0.90458 0.93403 0.90774 0.96071 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.73 71.98 0.63 -5.45 16 2 C 0.18 8.75 1.44 44.17 0.06 8.82 16 3 H -0.01 -0.67 6.87 -2.39 -0.02 -0.69 16 4 C -0.51 -29.93 8.59 25.60 0.22 -29.71 16 5 H 0.04 2.78 6.76 -2.91 -0.02 2.76 16 6 C 0.01 0.87 5.45 84.65 0.46 1.33 16 7 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 8 Si 0.95 46.32 24.37 68.60 1.67 48.00 16 9 H -0.26 -12.28 6.87 99.48 0.68 -11.60 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.26 -11.88 6.53 99.48 0.65 -11.23 16 12 N -0.52 -22.30 5.10 -861.88 -4.40 -26.70 16 13 C 0.05 2.08 5.55 86.71 0.48 2.56 16 14 C -0.11 -3.07 6.62 31.86 0.21 -2.86 16 15 C -0.09 -2.32 2.76 -9.92 -0.03 -2.35 16 16 H 0.08 1.96 6.85 -2.39 -0.02 1.95 16 17 C 0.07 1.59 3.96 86.30 0.34 1.93 16 18 N -0.53 -11.74 4.92 -883.05 -4.34 -16.08 16 19 C 0.03 0.59 5.35 86.65 0.46 1.06 16 20 C -0.12 -1.85 7.06 31.80 0.22 -1.63 16 21 C -0.13 -1.75 6.93 31.47 0.22 -1.54 16 22 C 0.03 0.58 6.70 86.45 0.58 1.15 16 23 C 0.05 1.87 5.26 86.45 0.45 2.32 16 24 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.03 1.54 3.27 -2.39 -0.01 1.53 16 26 H 0.06 2.19 7.52 -2.38 -0.02 2.18 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.02 0.96 8.02 -2.39 -0.02 0.94 16 29 H 0.06 2.47 7.14 -2.39 -0.02 2.45 16 30 H 0.08 2.13 7.86 -2.39 -0.02 2.11 16 31 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.05 0.94 7.97 -2.39 -0.02 0.92 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.50 7.62 -2.39 -0.02 1.49 16 35 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.78 7.67 -2.39 -0.02 0.76 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 43 H 0.08 2.77 7.49 -2.39 -0.02 2.75 16 Total: -1.00 -66.40 317.33 -1.58 -67.98 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.87 Total: 10.94 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.32 Total: -24.35 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -8.44 Total: -102.56 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 48.00 kcal Total: -66.40 -1.58 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246160995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.583 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds