Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31517 * 120.00292 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46965 * 90.00152 * 8 6 4 10 10 H 1.48503 * 109.47392 * 210.00172 * 8 6 4 11 11 H 1.48504 * 109.47211 * 330.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 H 1.08994 * 109.45926 * 65.01990 * 14 13 12 16 16 C 1.53039 * 109.45876 * 184.99832 * 14 13 12 17 17 C 1.53121 * 109.27516 * 179.19229 * 16 14 13 18 18 C 1.53112 * 109.16221 * 302.34854 * 17 16 14 19 19 C 1.53039 * 109.28341 * 57.65217 * 18 17 16 20 20 N 1.46839 * 109.46134 * 305.05104 * 14 13 12 21 21 C 1.46902 * 111.00240 * 54.14298 * 20 14 13 22 22 C 1.52997 * 117.50424 * 243.74626 * 21 20 14 23 23 C 1.52999 * 117.49933 * 175.08275 * 21 20 14 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 27 27 H 0.96997 * 120.00409 * 180.02562 * 7 6 4 28 28 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 31 31 H 1.09001 * 109.50156 * 299.13489 * 16 14 13 32 32 H 1.09003 * 109.50293 * 59.21736 * 16 14 13 33 33 H 1.09002 * 109.52202 * 62.25035 * 17 16 14 34 34 H 1.08997 * 109.52037 * 182.43783 * 17 16 14 35 35 H 1.08996 * 109.50521 * 177.59669 * 18 17 16 36 36 H 1.09003 * 109.50517 * 297.71100 * 18 17 16 37 37 H 1.09003 * 109.46008 * 60.83618 * 19 18 17 38 38 H 1.08997 * 109.46460 * 180.81524 * 19 18 17 39 39 H 1.09005 * 115.54448 * 29.42024 * 21 20 14 40 40 H 1.09007 * 117.49434 * 0.02562 * 22 21 20 41 41 H 1.08999 * 117.49921 * 145.02139 * 22 21 20 42 42 H 1.08996 * 117.50131 * 214.98008 * 23 21 20 43 43 H 1.08997 * 117.49869 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 1 1.8734 -1.2997 -3.8565 16 6 2.7789 0.4462 -4.7361 17 6 3.3110 -0.3109 -5.9561 18 6 4.6269 -1.0003 -5.5852 19 6 4.3895 -1.9376 -4.3990 20 7 3.8818 -1.1657 -3.2576 21 6 3.7733 -2.0080 -2.0589 22 6 4.5985 -1.6051 -0.8352 23 6 5.0002 -2.8304 -1.6600 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9034 -0.5279 4.4375 28 1 1.4495 -1.4979 -1.4101 29 1 1.0871 0.6163 -2.5526 30 1 2.7589 1.0462 -2.1182 31 1 1.8205 0.9039 -4.9813 32 1 3.4898 1.2212 -4.4496 33 1 2.5823 -1.0598 -6.2664 34 1 3.4844 0.3901 -6.7725 35 1 4.9889 -1.5759 -6.4371 36 1 5.3674 -0.2484 -5.3123 37 1 3.6592 -2.6975 -4.6771 38 1 5.3277 -2.4191 -4.1232 39 1 2.7924 -2.4490 -1.8816 40 1 5.2216 -0.7147 -0.9194 41 1 4.1607 -1.7814 0.1473 42 1 4.8266 -3.8123 -1.2197 43 1 5.8877 -2.7469 -2.2872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309334239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = 31.631683 kcal Electronic energy + Delta-G solvation = -20113.312652 eV Core-core repulsion = 17387.070000 eV Total energy + Delta-G solvation = -2726.242651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61374 -37.68922 -36.92363 -34.64739 -32.99512 -32.24091 -30.22126 -27.12846 -26.35026 -24.67694 -23.06154 -22.23024 -22.18302 -21.28343 -20.41545 -18.67856 -17.24442 -16.93692 -16.37440 -15.77907 -15.72779 -15.42609 -15.02143 -14.68855 -14.51986 -14.29132 -14.17740 -13.94974 -13.36396 -13.21217 -13.04794 -12.72464 -12.57878 -12.42775 -12.08235 -11.92500 -11.86848 -11.64187 -11.49634 -11.25102 -11.24473 -11.06791 -10.81540 -10.67873 -10.57696 -8.97162 -8.63246 -8.19302 -6.18618 1.29419 1.36101 1.44562 2.36071 2.97400 3.14929 3.25537 3.52661 3.90903 4.08560 4.13544 4.26902 4.37901 4.42968 4.46535 4.50892 4.52876 4.59964 4.61512 4.69530 4.79641 4.81186 4.87281 4.87701 5.00524 5.03384 5.07835 5.08022 5.17158 5.28429 5.30549 5.38048 5.41723 5.48330 5.58327 5.67739 5.76587 6.12703 6.42810 6.47382 6.75911 6.80388 6.92424 7.45497 8.97094 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.006512 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.776961 B = 4298.941215 C = 5000.451609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.185 3.815 3 H 0.019 0.981 4 C -0.484 4.484 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.305 1.305 11 H -0.256 1.256 12 N -0.656 5.656 13 C 0.065 3.935 14 C 0.097 3.903 15 H 0.036 0.964 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.113 4.113 19 C 0.054 3.946 20 N -0.510 5.510 21 C 0.074 3.926 22 C -0.139 4.139 23 C -0.198 4.198 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 0.482 -20.073 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.076 3.924 3 H 0.037 0.963 4 C -0.522 4.522 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.594 5.594 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.233 1.233 11 H -0.180 1.180 12 N -0.285 5.285 13 C -0.064 4.064 14 C -0.012 4.012 15 H 0.054 0.946 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.073 4.073 20 N -0.236 5.236 21 C -0.035 4.035 22 C -0.177 4.177 23 C -0.236 4.236 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.944 0.950 -19.652 19.771 hybrid contribution -1.951 0.111 0.807 2.114 sum -0.007 1.061 -18.845 18.875 Atomic orbital electron populations 1.22731 1.00088 1.01156 0.99540 1.19431 0.89360 0.93957 0.89688 0.96310 1.21338 1.29143 1.12368 0.89391 0.92768 1.25699 0.97767 0.99523 0.95821 1.70034 1.48451 1.42590 0.98323 0.85941 0.79175 0.80855 0.76709 1.19908 1.23323 1.18028 1.61336 1.55819 1.08576 1.02803 1.22022 0.98291 0.95701 0.90419 1.21619 0.89436 0.95889 0.94243 0.94633 1.21579 1.01733 0.97516 0.93748 1.21547 0.96963 0.99559 0.97161 1.21584 0.97920 0.98763 0.96760 1.22142 0.99624 0.94911 0.90625 1.61625 1.27113 1.31747 1.03078 1.21888 0.93224 0.97276 0.91117 1.22599 1.02593 0.96531 0.95960 1.23375 0.99627 0.95882 1.04718 0.92681 0.95064 0.92597 0.93023 0.85307 0.94909 0.92511 0.90553 0.91882 0.91961 0.90372 0.90005 0.91987 0.95358 0.90840 0.89750 0.91490 0.91030 0.89490 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.10 8.64 71.98 0.62 -6.48 16 2 C 0.19 8.31 2.17 44.17 0.10 8.40 16 3 H 0.02 0.91 6.86 -2.39 -0.02 0.89 16 4 C -0.48 -26.71 9.17 25.60 0.23 -26.47 16 5 H 0.05 3.30 5.99 -2.91 -0.02 3.29 16 6 C 0.01 0.45 5.45 84.65 0.46 0.92 16 7 N -0.95 -59.65 13.96 21.44 0.30 -59.35 16 8 Si 0.94 45.55 24.37 68.60 1.67 47.23 16 9 H -0.27 -12.58 6.87 99.48 0.68 -11.90 16 10 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.26 -11.59 6.53 99.48 0.65 -10.94 16 12 N -0.66 -24.57 2.17 -495.42 -1.08 -25.65 16 13 C 0.07 2.06 5.10 86.30 0.44 2.50 16 14 C 0.10 2.54 2.23 44.94 0.10 2.64 16 15 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 16 C -0.11 -2.24 5.37 30.65 0.16 -2.07 16 17 C -0.11 -1.94 6.00 30.67 0.18 -1.76 16 18 C -0.11 -2.04 6.09 30.64 0.19 -1.86 16 19 C 0.05 1.24 5.29 86.33 0.46 1.69 16 20 N -0.51 -14.43 4.65 -846.04 -3.93 -18.36 16 21 C 0.07 2.42 3.36 44.91 0.15 2.57 16 22 C -0.14 -5.40 9.39 30.62 0.29 -5.11 16 23 C -0.20 -6.18 9.69 30.62 0.30 -5.88 16 24 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 25 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16 26 H 0.06 1.89 7.45 -2.39 -0.02 1.88 16 27 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.33 11.77 7.01 -89.69 -0.63 11.14 16 29 H 0.03 0.96 7.44 -2.39 -0.02 0.94 16 30 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 1.67 6.41 -2.39 -0.02 1.65 16 39 H 0.09 2.94 5.81 -2.38 -0.01 2.93 16 40 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.07 3.39 5.76 -2.39 -0.01 3.38 16 42 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.10 2.70 6.92 -2.39 -0.02 2.68 16 Total: -1.00 -62.04 312.46 0.91 -61.12 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.27 Total: 25.92 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.68 Total: -30.91 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.71 Total: -103.36 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.23 kcal Total: -62.04 0.91 -61.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309334239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.755 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds