Wall clock time and date at job start Mon Mar 30 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 C 1.53779 * 113.61822 * 254.13639 * 13 12 2 15 15 C 1.53953 * 87.02264 * 220.05128 * 14 13 12 16 16 N 1.46899 * 113.74567 * 139.94317 * 15 14 13 17 17 C 1.46838 * 110.99853 * 206.61092 * 16 15 14 18 18 C 1.53042 * 109.52091 * 174.16089 * 17 16 15 19 19 C 1.53119 * 109.27901 * 59.17640 * 18 17 16 20 20 C 1.53113 * 109.16036 * 302.34610 * 19 18 17 21 21 C 1.46845 * 110.99915 * 82.39992 * 16 15 14 22 22 C 1.53777 * 87.11116 * 25.35992 * 15 14 13 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 27 27 H 1.00893 * 110.99635 * 321.04453 * 12 2 1 28 28 H 1.09000 * 112.85310 * 25.33783 * 13 12 2 29 29 H 1.09005 * 113.61027 * 334.57161 * 14 13 12 30 30 H 1.08997 * 113.61395 * 105.46863 * 14 13 12 31 31 H 1.09000 * 113.53298 * 270.80879 * 15 14 13 32 32 H 1.09002 * 109.46641 * 294.17331 * 17 16 15 33 33 H 1.08993 * 109.46524 * 54.14753 * 17 16 15 34 34 H 1.09004 * 109.50159 * 299.23698 * 18 17 16 35 35 H 1.09002 * 109.50337 * 179.12274 * 18 17 16 36 36 H 1.09002 * 109.52395 * 182.44104 * 19 18 17 37 37 H 1.09005 * 109.51973 * 62.25546 * 19 18 17 38 38 H 1.08998 * 109.50437 * 297.70762 * 20 19 18 39 39 H 1.09005 * 109.53474 * 177.60992 * 20 19 18 40 40 H 1.09009 * 109.46558 * 305.85560 * 21 16 15 41 41 H 1.08994 * 109.46513 * 65.82579 * 21 16 15 42 42 H 1.08998 * 113.61815 * 220.09275 * 22 15 14 43 43 H 1.09004 * 113.69327 * 89.20112 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 0.9670 -0.0073 -3.3802 15 6 2.0313 0.2391 -4.4649 16 7 1.9142 -0.6571 -5.6229 17 6 3.2140 -0.8381 -6.2818 18 6 3.0843 -1.8864 -7.3893 19 6 2.0366 -1.4220 -8.4047 20 6 0.7049 -1.1944 -7.6843 21 6 0.9035 -0.1662 -6.5683 22 6 3.0761 -0.2196 -3.4341 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8912 -0.5369 4.4374 27 1 1.4495 -1.4977 -1.4101 28 1 2.1950 1.2657 -2.0508 29 1 0.5728 -1.0235 -3.3781 30 1 0.1847 0.7513 -3.3544 31 1 2.1288 1.2870 -4.7489 32 1 3.5371 0.1089 -6.7141 33 1 3.9489 -1.1725 -5.5496 34 1 2.7746 -2.8373 -6.9558 35 1 4.0456 -2.0092 -7.8884 36 1 1.9097 -2.1856 -9.1722 37 1 2.3647 -0.4909 -8.8667 38 1 0.3577 -2.1345 -7.2555 39 1 -0.0346 -0.8230 -8.3938 40 1 -0.0399 -0.0124 -6.0441 41 1 1.2373 0.7776 -6.9993 42 1 3.9940 0.3679 -3.4516 43 1 3.2608 -1.2938 -3.4458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309802971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:48 Heat of formation + Delta-G solvation = 19.849120 kcal Electronic energy + Delta-G solvation = -19154.177432 eV Core-core repulsion = 16427.423850 eV Total energy + Delta-G solvation = -2726.753582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80359 -37.73950 -35.05392 -32.56843 -31.53048 -30.99113 -28.41628 -25.59050 -25.03428 -24.52708 -22.85665 -21.85282 -20.29633 -19.80284 -19.15829 -16.77428 -16.22401 -15.48017 -14.98848 -14.70103 -14.64321 -14.22305 -13.98507 -13.54214 -13.27577 -13.02306 -12.58752 -12.41485 -12.28195 -12.09276 -12.02933 -11.62080 -11.34515 -11.12992 -10.94971 -10.85269 -10.80630 -10.64863 -10.40519 -10.10297 -10.01919 -10.01354 -9.40648 -9.03574 -8.52780 -8.33363 -7.33994 -6.00690 -3.97613 3.28079 3.37617 3.40629 3.84489 4.43698 4.60345 4.65141 4.74973 4.80750 4.97558 5.08555 5.13320 5.18086 5.29608 5.30154 5.37690 5.45628 5.46326 5.55461 5.71868 5.73170 5.79160 5.82104 5.95442 5.97019 6.04437 6.12013 6.19110 6.23956 6.29096 6.30649 6.45419 6.57373 6.60485 6.79337 7.08782 7.17282 7.21294 7.76795 8.00920 8.40743 8.75090 9.11104 9.62352 11.13051 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049400 B = 0.004098 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.666851 B = 6830.530567 C = 7083.451792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.182 3.818 3 H 0.032 0.968 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.658 5.658 13 C 0.072 3.928 14 C -0.152 4.152 15 C 0.051 3.949 16 N -0.523 5.523 17 C 0.055 3.945 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.117 4.117 21 C 0.056 3.944 22 C -0.118 4.118 23 H 0.027 0.973 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.262 0.738 27 H 0.335 0.665 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.060 0.940 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 1.811 -22.708 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.196 1.196 12 N -0.286 5.286 13 C -0.040 4.040 14 C -0.192 4.192 15 C -0.057 4.057 16 N -0.248 5.248 17 C -0.073 4.073 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.156 4.156 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.184 1.429 -22.147 22.225 hybrid contribution -1.429 1.809 -0.307 2.326 sum -2.613 3.237 -22.454 22.836 Atomic orbital electron populations 1.22880 1.01494 1.00815 0.98762 1.19709 0.88565 0.94921 0.89503 0.94987 1.21026 1.30951 1.13775 0.87842 0.90072 1.24951 0.96035 0.96610 0.95907 1.69891 1.46113 1.40344 0.97808 0.86878 0.80570 0.83984 0.76748 1.20843 1.22528 1.19560 1.60467 1.57372 1.08271 1.02488 1.22850 0.94310 0.97166 0.89713 1.23828 0.97018 1.02137 0.96203 1.23083 0.99473 0.93975 0.89219 1.62121 1.06974 1.47849 1.07869 1.22052 0.91452 0.97490 0.96305 1.21595 0.98638 0.99448 0.95833 1.21576 0.95624 1.00887 0.97771 1.21581 0.97066 1.00065 0.96741 1.22036 0.96168 0.95683 0.93318 1.23158 0.96387 1.02278 0.93799 0.95421 0.92816 0.93896 0.92760 0.84642 0.89433 0.89255 0.92523 0.92300 0.95473 0.90263 0.91023 0.91800 0.92041 0.92566 0.91060 0.91911 0.90888 0.95449 0.92094 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 8.64 37.16 0.32 -3.58 16 2 C 0.18 4.29 2.16 -68.86 -0.15 4.14 16 3 H 0.03 0.79 6.54 -51.93 -0.34 0.45 16 4 C -0.50 -14.17 9.42 -34.44 -0.32 -14.50 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 8 Si 0.89 22.18 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.86 6.86 56.52 0.39 -6.47 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 12 N -0.66 -13.32 6.34 -100.10 -0.64 -13.95 16 13 C 0.07 1.19 3.98 -66.90 -0.27 0.92 16 14 C -0.15 -2.14 7.22 -25.83 -0.19 -2.33 16 15 C 0.05 0.65 3.21 -66.81 -0.21 0.44 16 16 N -0.52 -6.17 4.62 -225.62 -1.04 -7.22 16 17 C 0.05 0.58 5.29 -3.84 -0.02 0.56 16 18 C -0.12 -1.06 6.09 -26.65 -0.16 -1.23 16 19 C -0.12 -1.01 6.00 -26.61 -0.16 -1.16 16 20 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 21 C 0.06 0.58 5.43 -3.84 -0.02 0.56 16 22 C -0.12 -1.68 6.30 -25.92 -0.16 -1.84 16 23 H 0.03 0.51 7.94 -51.93 -0.41 0.10 16 24 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 25 H 0.04 0.98 3.25 -51.93 -0.17 0.81 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.33 6.49 7.95 -39.30 -0.31 6.18 16 28 H 0.09 1.50 7.49 -51.93 -0.39 1.11 16 29 H 0.09 1.31 7.83 -51.93 -0.41 0.90 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.87 6.83 -51.93 -0.35 0.52 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.78 7.99 -51.92 -0.41 0.36 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -29.74 322.86 -9.67 -39.41 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.88 Total: 3.45 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.61 Total: -17.39 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.90 Total: -48.37 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.74 -9.67 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309802971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.260 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds