Wall clock time and date at job start Mon Mar 30 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47552 * 2 1 4 4 C 1.50704 * 109.47325 * 239.99663 * 2 1 3 5 5 H 1.07998 * 120.00085 * 240.00363 * 4 2 1 6 6 C 1.37872 * 119.99833 * 59.99566 * 4 2 1 7 7 N 1.31513 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47085 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46994 * 120.00681 * 8 6 4 11 11 H 1.48502 * 109.47206 * 240.00346 * 8 6 4 12 12 N 1.46898 * 109.47223 * 119.99947 * 2 1 3 13 13 C 1.46901 * 111.00443 * 176.04521 * 12 2 1 14 14 C 1.46906 * 110.99820 * 299.99834 * 12 2 1 15 15 H 1.09003 * 109.03205 * 54.99622 * 14 12 2 16 16 C 1.52530 * 109.04131 * 296.03772 * 14 12 2 17 17 C 1.53813 * 111.68721 * 185.35463 * 16 14 12 18 18 C 1.51631 * 107.03595 * 57.54979 * 17 16 14 19 19 H 1.09003 * 110.49059 * 55.21996 * 18 17 16 20 20 C 1.53072 * 116.62788 * 182.56071 * 18 17 16 21 21 N 1.49063 * 103.41499 * 155.97508 * 20 18 17 22 22 C 1.48657 * 108.30171 * 335.64439 * 21 20 18 23 23 C 1.53105 * 106.38362 * 357.74208 * 22 21 20 24 24 H 1.09002 * 109.17509 * 271.23772 * 23 22 21 25 25 C 1.51444 * 118.40032 * 144.03520 * 23 22 21 26 26 H 1.08998 * 109.47057 * 300.00273 * 1 2 3 27 27 H 1.09007 * 109.46908 * 60.00057 * 1 2 3 28 28 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 29 29 H 0.97010 * 119.99890 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 33 33 H 1.08992 * 109.03583 * 305.92134 * 16 14 12 34 34 H 1.08994 * 109.03767 * 64.86339 * 16 14 12 35 35 H 1.08990 * 109.94335 * 176.93491 * 17 16 14 36 36 H 1.09009 * 109.94045 * 298.08942 * 17 16 14 37 37 H 1.08996 * 110.63129 * 274.45697 * 20 18 17 38 38 H 1.09004 * 110.62667 * 37.33091 * 20 18 17 39 39 H 1.00898 * 111.00317 * 97.74027 * 21 20 18 40 40 H 1.09003 * 110.17348 * 115.89269 * 22 21 20 41 41 H 1.08991 * 110.17828 * 237.63407 * 22 21 20 42 42 H 1.09005 * 109.87867 * 61.63409 * 25 23 22 43 43 H 1.09002 * 109.98964 * 300.41391 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8299 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 3.1455 -2.2879 -3.6036 10 1 1.1659 -1.5869 -4.8160 11 1 3.1466 -0.1877 -4.8165 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 1 0.4617 0.0490 2.3884 16 6 2.1429 1.3771 2.4833 17 6 1.7957 2.0833 3.8049 18 6 2.3155 1.2061 4.9272 19 1 3.3791 1.0074 4.7948 20 6 2.0309 1.6785 6.3551 21 7 2.0907 0.4212 7.1537 22 6 1.7978 -0.7211 6.2486 23 6 1.4987 -0.1171 4.8739 24 1 0.4341 0.1067 4.8051 25 6 1.9570 -0.8688 3.6416 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.7093 1.1615 -3.4845 30 1 3.8163 -1.3721 2.0501 31 1 3.9192 0.2043 1.2300 32 1 3.8069 -1.2916 0.2719 33 1 3.2268 1.3085 2.3910 34 1 1.7521 1.9659 1.6536 35 1 2.2782 3.0599 3.8425 36 1 0.7153 2.1990 3.8919 37 1 2.7954 2.3809 6.6869 38 1 1.0412 2.1309 6.4199 39 1 2.9933 0.3135 7.5915 40 1 2.6688 -1.3719 6.1708 41 1 0.9406 -1.2835 6.6183 42 1 1.4709 -1.8436 3.5999 43 1 3.0397 -0.9930 3.6621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400918250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:40 Heat of formation + Delta-G solvation = -15.046295 kcal Electronic energy + Delta-G solvation = -19994.976076 eV Core-core repulsion = 17266.709315 eV Total energy + Delta-G solvation = -2728.266760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29275 -38.85673 -35.69948 -34.15884 -32.47915 -31.04594 -29.78810 -28.29284 -27.03310 -25.78544 -23.83180 -22.84350 -21.76753 -20.92949 -20.08385 -18.32633 -17.37286 -16.81089 -16.29700 -16.04157 -15.72972 -15.33812 -15.16088 -14.86153 -14.42603 -13.90721 -13.84088 -13.50488 -13.31383 -13.07572 -12.97447 -12.86948 -12.73223 -12.61431 -12.37534 -12.17580 -12.00927 -11.99739 -11.72602 -11.64247 -11.48630 -11.02456 -10.88102 -10.78138 -10.50378 -9.41580 -8.79883 -8.11433 -6.22710 1.39572 1.41730 1.53203 2.41563 3.15364 3.22274 3.33752 3.59944 3.67830 3.88653 4.05882 4.22164 4.35574 4.45060 4.51208 4.52338 4.59973 4.64382 4.67688 4.70211 4.79297 4.86533 4.92304 4.99166 5.01278 5.03540 5.11014 5.11386 5.19709 5.24226 5.28847 5.33962 5.44196 5.54405 5.55969 5.75174 5.79250 5.83492 6.27169 6.43759 6.51348 6.80334 6.93816 7.46556 8.94598 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.046559 B = 0.005032 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.241378 B = 5562.684616 C = 5742.051167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.029 1.029 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.541 5.541 13 C 0.037 3.963 14 C 0.085 3.915 15 H 0.062 0.938 16 C -0.145 4.145 17 C -0.091 4.091 18 C -0.116 4.116 19 H 0.072 0.928 20 C 0.058 3.942 21 N -0.691 5.691 22 C 0.059 3.941 23 C -0.105 4.105 24 H 0.067 0.933 25 C -0.080 4.080 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.346 0.654 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 0.229 16.654 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.110 3.890 3 H -0.012 1.012 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.264 5.264 13 C -0.111 4.111 14 C -0.024 4.024 15 H 0.080 0.920 16 C -0.184 4.184 17 C -0.130 4.130 18 C -0.136 4.136 19 H 0.090 0.910 20 C -0.071 4.071 21 N -0.320 5.320 22 C -0.070 4.070 23 C -0.125 4.125 24 H 0.086 0.914 25 C -0.119 4.119 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.162 0.838 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.669 -0.114 16.791 17.002 hybrid contribution 1.197 0.604 -2.003 2.411 sum 3.866 0.490 14.787 15.292 Atomic orbital electron populations 1.21650 0.97858 0.98928 0.99416 1.19004 0.92167 0.90625 0.87177 1.01199 1.21518 1.30873 1.12191 0.91139 0.92359 1.25700 0.95425 0.95777 1.01875 1.70032 1.37947 1.24272 1.23871 0.85502 0.78108 0.78629 0.79359 1.19167 1.20674 1.20738 1.62322 1.10084 1.51861 1.02105 1.22250 0.88383 0.98859 1.01652 1.21780 0.99101 0.91242 0.90289 0.91968 1.22139 1.00809 0.97561 0.97879 1.21187 1.00939 0.98175 0.92659 1.22451 0.99548 0.96115 0.95497 0.90996 1.22619 1.02310 0.92273 0.89877 1.62448 1.36974 1.01762 1.30808 1.22400 1.01465 0.93237 0.89931 1.22036 1.00054 0.96152 0.94221 0.91450 1.21189 1.00907 0.98123 0.91641 0.95480 0.92346 0.95309 0.93039 0.90712 0.97057 0.92715 0.92578 0.94727 0.91146 0.91831 0.89918 0.90747 0.83788 0.92214 0.90398 0.91571 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.74 71.98 0.63 -5.43 16 2 C 0.22 11.14 1.74 44.17 0.08 11.22 16 3 H -0.03 -1.67 6.47 -2.39 -0.02 -1.69 16 4 C -0.52 -28.85 7.88 25.60 0.20 -28.65 16 5 H 0.06 3.23 6.40 -2.91 -0.02 3.21 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.54 -23.05 4.60 -875.44 -4.02 -27.07 16 13 C 0.04 1.42 8.59 127.69 1.10 2.52 16 14 C 0.08 2.96 1.95 45.04 0.09 3.05 16 15 H 0.06 2.36 6.01 -2.39 -0.01 2.34 16 16 C -0.14 -4.83 4.48 30.71 0.14 -4.69 16 17 C -0.09 -2.30 5.71 30.42 0.17 -2.13 16 18 C -0.12 -2.51 2.44 -10.32 -0.03 -2.53 16 19 H 0.07 1.59 8.01 -2.39 -0.02 1.57 16 20 C 0.06 1.05 7.25 85.91 0.62 1.68 16 21 N -0.69 -12.61 7.48 -504.03 -3.77 -16.38 16 22 C 0.06 1.13 7.36 86.00 0.63 1.77 16 23 C -0.10 -2.41 2.34 -10.37 -0.02 -2.44 16 24 H 0.07 1.69 7.94 -2.39 -0.02 1.68 16 25 C -0.08 -2.22 4.85 30.37 0.15 -2.07 16 26 H 0.03 1.21 6.29 -2.39 -0.02 1.19 16 27 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.26 14.40 8.31 -92.70 -0.77 13.62 16 30 H 0.07 2.40 6.29 -2.39 -0.02 2.39 16 31 H 0.01 0.43 6.14 -2.39 -0.01 0.42 16 32 H 0.05 2.33 6.10 -2.38 -0.01 2.31 16 33 H 0.06 1.90 6.01 -2.39 -0.01 1.88 16 34 H 0.03 1.37 6.67 -2.39 -0.02 1.36 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.62 7.99 -2.38 -0.02 1.60 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.35 5.07 8.93 -89.70 -0.80 4.27 16 40 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 1.77 6.26 -2.39 -0.01 1.76 16 Total: -1.00 -60.36 309.69 -1.13 -61.48 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.19 Total: 15.89 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.21 Total: -26.66 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -7.55 Total: -96.84 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -60.36 -1.13 -61.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400918250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.436 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds