Wall clock time and date at job start Mon Mar 30 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 N 1.46899 * 109.47212 * 240.00300 * 2 1 3 5 5 C 1.46901 * 111.00093 * 84.99462 * 4 2 1 6 6 H 1.08994 * 110.43549 * 327.55296 * 5 4 2 7 7 C 1.54270 * 110.48230 * 90.22911 * 5 4 2 8 8 C 1.53872 * 106.59800 * 142.28895 * 7 5 4 9 9 C 1.54262 * 106.60025 * 359.97438 * 8 7 5 10 10 H 1.08999 * 110.48263 * 95.06699 * 9 8 7 11 11 C 1.50695 * 110.60137 * 217.65671 * 9 8 7 12 12 H 1.07998 * 120.00737 * 114.84374 * 11 9 8 13 13 C 1.37884 * 119.99835 * 294.84392 * 11 9 8 14 14 N 1.31519 * 119.99997 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99845 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47073 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47142 * 120.00054 * 15 13 11 18 18 H 1.48503 * 109.46880 * 239.99413 * 15 13 11 19 19 C 1.54882 * 110.49016 * 205.00172 * 5 4 2 20 20 C 1.53001 * 109.47350 * 120.00605 * 2 1 3 21 21 H 1.08995 * 110.37015 * 57.64312 * 20 2 1 22 22 C 1.54377 * 110.41139 * 180.02562 * 20 2 1 23 23 C 1.54259 * 105.06022 * 142.74997 * 22 20 2 24 24 C 1.54387 * 105.06271 * 359.97438 * 23 22 20 25 25 N 1.48559 * 104.58955 * 336.15098 * 24 23 22 26 26 H 1.08992 * 109.47109 * 59.99501 * 1 2 3 27 27 H 1.08997 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46487 * 299.99671 * 1 2 3 29 29 H 1.00909 * 111.00105 * 321.04994 * 4 2 1 30 30 H 1.09001 * 110.03106 * 261.57464 * 7 5 4 31 31 H 1.09007 * 110.03237 * 23.00458 * 7 5 4 32 32 H 1.09005 * 110.03383 * 240.71043 * 8 7 5 33 33 H 1.09001 * 110.06961 * 119.31152 * 8 7 5 34 34 H 0.97006 * 119.99928 * 180.02562 * 14 13 11 35 35 H 1.09005 * 110.76144 * 321.69907 * 19 5 4 36 36 H 1.08995 * 110.75770 * 84.88561 * 19 5 4 37 37 H 1.08991 * 110.32683 * 23.85334 * 22 20 2 38 38 H 1.09006 * 110.32026 * 261.63655 * 22 20 2 39 39 H 1.09000 * 110.32330 * 241.10231 * 23 22 20 40 40 H 1.09003 * 110.41347 * 118.93573 * 23 22 20 41 41 H 1.08999 * 110.41133 * 94.92454 * 24 23 22 42 42 H 1.08999 * 110.41276 * 217.37423 * 24 23 22 43 43 H 1.00904 * 111.00060 * 159.04552 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2904 0.9686 -2.2825 7 6 3.4647 0.9038 -2.4193 8 6 3.8252 1.0092 -3.9115 9 6 2.6497 0.3880 -4.6938 10 1 1.9502 1.1620 -5.0095 11 6 3.1548 -0.3830 -5.8860 12 1 3.0201 -1.4535 -5.9336 13 6 3.7889 0.2784 -6.9164 14 7 3.9525 1.5821 -6.8589 15 14 4.4143 -0.6771 -8.3947 16 1 4.1077 -2.1193 -8.2177 17 1 3.7499 -0.1766 -9.6249 18 1 5.8831 -0.4950 -8.5164 19 6 1.9776 -0.5660 -3.6757 20 6 2.0401 -0.7214 1.2492 21 1 1.6510 -1.7389 1.2851 22 6 3.5837 -0.7335 1.2714 23 6 3.9647 -0.5489 2.7547 24 6 2.6192 -0.4402 3.5040 25 7 1.6542 0.0248 2.4747 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.4496 -1.4979 -1.4102 30 1 3.4146 1.8984 -1.9761 31 1 4.2067 0.2991 -1.8978 32 1 4.7421 0.4558 -4.1142 33 1 3.9506 2.0548 -4.1930 34 1 4.3984 2.0474 -7.5840 35 1 2.5235 -1.5073 -3.6105 36 1 0.9348 -0.7435 -3.9384 37 1 3.9774 0.0890 0.6743 38 1 3.9602 -1.6865 0.8996 39 1 4.5453 0.3642 2.8857 40 1 4.5289 -1.4102 3.1123 41 1 2.3207 -1.4138 3.8926 42 1 2.6921 0.2869 4.3128 43 1 0.7059 -0.1896 2.7449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423164544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:59 Heat of formation + Delta-G solvation = -20.735277 kcal Electronic energy + Delta-G solvation = -19241.439838 eV Core-core repulsion = 16512.926385 eV Total energy + Delta-G solvation = -2728.513453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.10397 -37.48489 -34.88079 -32.32573 -30.52369 -29.64582 -28.05968 -27.79732 -25.95731 -23.60193 -22.43933 -20.84177 -20.10665 -19.29222 -18.71528 -16.87874 -16.22477 -15.60989 -15.17776 -14.61503 -14.43188 -14.23044 -13.45250 -13.12145 -12.95630 -12.71759 -12.37390 -12.26503 -12.19689 -11.97320 -11.52624 -11.26619 -11.03722 -10.97259 -10.79156 -10.69980 -10.49805 -10.38043 -10.23923 -9.99088 -9.85983 -9.45471 -9.03385 -8.71606 -8.64254 -8.31758 -7.96760 -5.94899 -3.96956 3.33197 3.41237 3.45185 3.96663 4.49151 4.59475 4.77871 4.82508 5.01725 5.03803 5.31173 5.34013 5.37238 5.44454 5.53777 5.65029 5.71101 5.73914 5.81044 5.89951 5.98786 6.04699 6.08197 6.09681 6.22043 6.36872 6.45724 6.60829 6.73456 6.75089 6.86937 6.94493 7.06694 7.18147 7.27943 7.43864 7.64015 7.76635 7.83589 7.98907 8.09609 8.53847 9.06390 9.66651 11.15054 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.004214 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.842346 B = 6642.332424 C = 6871.753107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.084 0.916 4 N -0.677 5.677 5 C 0.083 3.917 6 H 0.039 0.961 7 C -0.112 4.112 8 C -0.096 4.096 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.116 4.116 20 C 0.080 3.920 21 H 0.044 0.956 22 C -0.103 4.103 23 C -0.130 4.130 24 C 0.037 3.963 25 N -0.663 5.663 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.335 0.665 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -3.855 18.005 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.013 4.013 3 H 0.102 0.898 4 N -0.307 5.307 5 C -0.026 4.026 6 H 0.058 0.942 7 C -0.151 4.151 8 C -0.135 4.135 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.154 4.154 20 C -0.030 4.030 21 H 0.062 0.938 22 C -0.142 4.142 23 C -0.168 4.168 24 C -0.092 4.092 25 N -0.292 5.292 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.086 -2.961 17.902 18.406 hybrid contribution -0.936 -1.240 -0.833 1.763 sum -4.022 -4.201 17.069 18.033 Atomic orbital electron populations 1.22506 0.97900 1.01404 1.02245 1.21449 0.91841 0.98412 0.89620 0.89820 1.60585 1.56590 1.09775 1.03775 1.22469 0.97091 0.93691 0.89364 0.94250 1.22258 0.95920 0.97788 0.99111 1.22060 1.00304 1.00598 0.90543 1.19372 0.92714 0.93111 0.91633 0.95430 1.21203 1.36958 0.93790 1.02934 0.92689 1.24988 0.96111 0.94813 0.98121 1.69989 1.43107 1.07216 1.32573 0.86612 0.78546 0.80287 0.82996 1.19831 1.21162 1.21111 1.22744 0.99149 0.99662 0.93879 1.22401 0.95955 0.94643 0.90034 0.93828 1.22128 0.94116 1.02917 0.94999 1.22365 0.96552 1.01737 0.96126 1.22866 0.93054 0.98242 0.95058 1.63585 1.05873 1.56442 1.03343 0.92552 0.93116 0.92092 0.84739 0.94338 0.92200 0.93140 0.93090 0.93237 0.91782 0.93970 0.90530 0.91287 0.91327 0.91809 0.94610 0.90525 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.00 37.16 0.33 -1.75 16 2 C 0.10 1.26 2.10 -67.71 -0.14 1.12 16 3 H 0.08 1.25 7.86 -51.93 -0.41 0.85 16 4 N -0.68 -9.99 5.69 -98.01 -0.56 -10.55 16 5 C 0.08 1.48 2.94 -66.06 -0.19 1.28 16 6 H 0.04 0.71 7.20 -51.93 -0.37 0.34 16 7 C -0.11 -2.19 6.53 -25.61 -0.17 -2.36 16 8 C -0.10 -2.29 5.61 -25.62 -0.14 -2.44 16 9 C 0.05 1.27 2.71 -90.13 -0.24 1.03 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.51 -14.17 8.37 -34.44 -0.29 -14.45 16 12 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 13 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 14 N -0.89 -26.00 12.63 55.43 0.70 -25.30 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 C -0.12 -2.39 5.65 -24.76 -0.14 -2.53 16 20 C 0.08 0.92 2.87 -66.06 -0.19 0.73 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 C -0.10 -1.25 6.20 -25.35 -0.16 -1.40 16 23 C -0.13 -1.30 7.00 -25.35 -0.18 -1.48 16 24 C 0.04 0.35 7.47 -2.18 -0.02 0.33 16 25 N -0.66 -6.96 6.93 -102.73 -0.71 -7.67 16 26 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 27 H 0.05 0.54 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 29 H 0.33 4.69 8.16 -39.29 -0.32 4.37 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 32 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 33 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.06 7.86 -51.93 -0.41 0.66 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.33 2.99 8.43 -39.29 -0.33 2.66 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -28.21 331.82 -10.26 -38.47 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.05 Total: 3.82 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.62 Total: -20.30 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.57 Total: -43.52 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.21 -10.26 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423164544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.734 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds