Wall clock time and date at job start Mon Mar 30 2020 04:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46709 * 2 1 4 4 C 1.50699 * 109.46992 * 239.99962 * 2 1 3 5 5 H 1.08003 * 120.00028 * 239.99797 * 4 2 1 6 6 C 1.37874 * 120.00191 * 60.00185 * 4 2 1 7 7 N 1.31515 * 120.00046 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99925 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47426 * 59.99586 * 8 6 4 10 10 H 1.48505 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47119 * 299.99462 * 8 6 4 12 12 N 1.46903 * 109.46990 * 119.99735 * 2 1 3 13 13 C 1.46904 * 110.99598 * 176.04745 * 12 2 1 14 14 C 1.46899 * 111.00020 * 299.99884 * 12 2 1 15 15 C 1.53003 * 109.46914 * 162.17507 * 14 12 2 16 16 C 1.54991 * 113.92514 * 70.04056 * 15 14 12 17 17 C 1.54053 * 104.76095 * 146.85901 * 16 15 14 18 18 N 1.48239 * 106.70208 * 1.00985 * 17 16 15 19 19 C 1.48806 * 105.17665 * 332.51842 * 18 17 16 20 20 C 1.47675 * 108.91004 * 88.17042 * 18 17 16 21 21 C 1.52992 * 109.28475 * 312.91613 * 20 18 17 22 22 C 1.53148 * 110.09026 * 304.78768 * 21 20 18 23 23 H 1.08999 * 109.47101 * 59.99951 * 1 2 3 24 24 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47207 * 300.00128 * 1 2 3 26 26 H 0.97001 * 119.99723 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.46567 * 194.47943 * 13 12 2 28 28 H 1.09000 * 109.47342 * 314.47600 * 13 12 2 29 29 H 1.08998 * 109.46949 * 74.47799 * 13 12 2 30 30 H 1.08998 * 109.46991 * 42.17449 * 14 12 2 31 31 H 1.08996 * 109.47383 * 282.17620 * 14 12 2 32 32 H 1.09007 * 110.37925 * 28.04052 * 16 15 14 33 33 H 1.08996 * 110.37972 * 265.68879 * 16 15 14 34 34 H 1.09000 * 110.01427 * 241.69621 * 17 16 15 35 35 H 1.09004 * 110.01104 * 120.32611 * 17 16 15 36 36 H 1.09000 * 110.93128 * 160.89165 * 19 18 17 37 37 H 1.08996 * 110.92912 * 284.52747 * 19 18 17 38 38 H 1.09006 * 109.50271 * 72.86536 * 20 18 17 39 39 H 1.09007 * 109.50111 * 192.97449 * 20 18 17 40 40 H 1.09007 * 109.36480 * 184.59495 * 21 20 18 41 41 H 1.09004 * 109.36269 * 64.98006 * 21 20 18 42 42 H 1.08992 * 109.63001 * 294.28688 * 22 21 20 43 43 H 1.09004 * 109.62406 * 173.70212 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5204 -4.0076 10 1 1.8259 -0.4207 -5.2205 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.6839 -0.9824 3.6079 16 6 3.1498 -1.2595 4.0279 17 6 3.0910 -1.4512 5.5553 18 7 1.6682 -1.3128 5.9476 19 6 1.0650 -0.4237 4.9180 20 6 1.0148 -2.6337 5.8523 21 6 1.3820 -3.2839 4.5170 22 6 1.0191 -2.3492 3.3593 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7082 1.1608 -3.4845 27 1 3.8050 -1.5205 1.9344 28 1 3.8185 -1.1173 0.2008 29 1 3.9189 0.1787 1.4167 30 1 0.5031 0.2573 2.3002 31 1 2.1482 0.8656 2.6029 32 1 3.7840 -0.4094 3.7761 33 1 3.5182 -2.1649 3.5455 34 1 3.6905 -0.6873 6.0505 35 1 3.4565 -2.4431 5.8211 36 1 -0.0207 -0.5202 4.9079 37 1 1.3604 0.6132 5.0776 38 1 1.3544 -3.2676 6.6714 39 1 -0.0666 -2.5098 5.9116 40 1 0.8364 -4.2214 4.4093 41 1 2.4528 -3.4865 4.4960 42 1 -0.0629 -2.2272 3.3126 43 1 1.3841 -2.7688 2.4218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691561014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:18 Heat of formation + Delta-G solvation = 1.120203 kcal Electronic energy + Delta-G solvation = -20267.050631 eV Core-core repulsion = 17539.484902 eV Total energy + Delta-G solvation = -2727.565728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91897 -38.58787 -35.05850 -33.06817 -32.94582 -30.97218 -30.45963 -28.23737 -26.47064 -25.69037 -24.34563 -23.21030 -21.56665 -20.93072 -19.75230 -18.30601 -17.28311 -17.06996 -16.49588 -15.89307 -15.61429 -15.34448 -14.67787 -14.63030 -14.43594 -13.87479 -13.64010 -13.62756 -13.42063 -13.09357 -12.91364 -12.74695 -12.67548 -12.58782 -12.46278 -12.12231 -12.06178 -11.97804 -11.68829 -11.56297 -11.35826 -11.13696 -11.06084 -10.82242 -10.50295 -9.37051 -8.88087 -8.11153 -6.22719 1.41768 1.43383 1.50852 2.41737 3.13232 3.16773 3.33422 3.60288 3.83861 4.09520 4.14279 4.24076 4.30762 4.38383 4.49984 4.54499 4.62499 4.65572 4.68201 4.73545 4.81020 4.84687 4.96410 4.98051 4.99076 5.04808 5.08565 5.10455 5.17018 5.22428 5.30301 5.35841 5.49190 5.52721 5.54151 5.72313 5.81159 5.87521 6.06726 6.26760 6.42265 6.77555 6.92747 7.46271 8.94639 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.005437 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.450257 B = 5148.623828 C = 5251.598985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.216 3.784 3 H -0.043 1.043 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.531 5.531 13 C 0.032 3.968 14 C 0.074 3.926 15 C -0.078 4.078 16 C -0.134 4.134 17 C 0.032 3.968 18 N -0.502 5.502 19 C 0.040 3.960 20 C 0.036 3.964 21 C -0.148 4.148 22 C -0.096 4.096 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.004 0.996 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -5.865 15.576 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H -0.026 1.026 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.254 5.254 13 C -0.116 4.116 14 C -0.054 4.054 15 C -0.081 4.081 16 C -0.172 4.172 17 C -0.096 4.096 18 N -0.223 5.223 19 C -0.089 4.089 20 C -0.093 4.093 21 C -0.187 4.187 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.651 -6.018 16.055 17.225 hybrid contribution 0.586 0.478 -2.190 2.317 sum 2.237 -5.541 13.865 15.098 Atomic orbital electron populations 1.21654 0.97381 0.99113 0.99524 1.19024 0.92563 0.89987 0.87543 1.02574 1.21392 1.31011 1.12230 0.90940 0.92234 1.25710 0.95417 0.95765 1.01900 1.70018 1.37781 1.24251 1.24043 0.85599 0.78685 0.78683 0.78572 1.19722 1.21034 1.19717 1.62009 1.09867 1.51921 1.01636 1.22490 0.88184 0.98817 1.02095 1.21879 0.99930 0.93869 0.89760 1.22265 0.95767 0.95777 0.94244 1.23021 0.95991 1.01500 0.96698 1.23103 0.90624 1.02581 0.93289 1.66445 1.03015 1.09722 1.43112 1.23509 0.99352 0.97689 0.88381 1.22619 0.99845 0.90370 0.96442 1.22223 1.02135 0.99088 0.95259 1.21603 0.99192 0.94187 0.98413 0.92340 0.95077 0.95159 0.92992 0.90175 0.92652 0.97740 0.91480 0.96413 0.92379 0.91068 0.90095 0.89978 0.90147 0.90367 0.89352 0.90653 0.90972 0.91402 0.93186 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.80 71.98 0.63 -5.23 16 2 C 0.22 11.08 2.06 44.17 0.09 11.17 16 3 H -0.04 -2.51 8.14 -2.38 -0.02 -2.53 16 4 C -0.52 -28.53 7.73 25.60 0.20 -28.33 16 5 H 0.06 3.25 6.51 -2.91 -0.02 3.23 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.53 -22.33 3.67 -901.46 -3.31 -25.64 16 13 C 0.03 1.26 8.43 127.69 1.08 2.34 16 14 C 0.07 2.65 4.44 86.30 0.38 3.03 16 15 C -0.08 -2.20 0.87 -50.37 -0.04 -2.24 16 16 C -0.13 -3.33 3.59 31.63 0.11 -3.22 16 17 C 0.03 0.68 6.20 86.40 0.54 1.21 16 18 N -0.50 -11.21 6.07 -878.37 -5.33 -16.54 16 19 C 0.04 0.98 5.93 86.72 0.51 1.49 16 20 C 0.04 0.70 5.84 86.15 0.50 1.20 16 21 C -0.15 -3.20 5.52 30.64 0.17 -3.03 16 22 C -0.10 -2.69 4.86 30.98 0.15 -2.54 16 23 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 24 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.32 6.07 -2.38 -0.01 1.30 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 27 H 0.08 2.64 4.99 -2.39 -0.01 2.63 16 28 H 0.05 2.39 5.85 -2.39 -0.01 2.37 16 29 H 0.00 0.16 7.87 -2.39 -0.02 0.14 16 30 H 0.07 2.49 5.58 -2.39 -0.01 2.47 16 31 H 0.02 0.65 7.84 -2.39 -0.02 0.63 16 32 H 0.06 1.53 7.50 -2.38 -0.02 1.51 16 33 H 0.07 1.81 5.64 -2.39 -0.01 1.80 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.50 6.94 -2.38 -0.02 1.48 16 36 H 0.08 1.91 7.70 -2.39 -0.02 1.90 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.44 7.87 -2.38 -0.02 1.43 16 40 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 1.44 5.37 -2.38 -0.01 1.43 16 42 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 43 H 0.06 1.94 7.47 -2.38 -0.02 1.93 16 Total: -1.00 -59.07 305.98 -0.62 -59.69 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.97 Total: 12.95 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.77 Total: -23.11 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -8.40 Total: -95.38 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -59.07 -0.62 -59.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691561014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.813 kcal (2) G-P(sol) polarization free energy of solvation -59.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds