Wall clock time and date at job start Mon Mar 30 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47007 * 2 1 4 4 C 1.53002 * 109.47183 * 240.00452 * 2 1 3 5 5 C 1.50697 * 109.47035 * 175.00070 * 4 2 1 6 6 H 1.08002 * 120.00550 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99905 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99841 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47064 * 59.99793 * 9 7 5 11 11 H 1.48507 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47194 * 299.99137 * 9 7 5 13 13 N 1.46897 * 109.47291 * 119.99991 * 2 1 3 14 14 C 1.46900 * 111.00457 * 250.23353 * 13 2 1 15 15 C 1.54326 * 109.01496 * 78.41910 * 14 13 2 16 16 C 1.53706 * 108.31081 * 66.72865 * 15 14 13 17 17 H 1.09003 * 112.12464 * 187.62197 * 16 15 14 18 18 C 1.54605 * 107.81188 * 311.63607 * 16 15 14 19 19 C 1.54290 * 104.83782 * 89.17233 * 18 16 15 20 20 C 1.54598 * 104.94249 * 359.95548 * 19 18 16 21 21 H 1.08999 * 112.22227 * 146.90496 * 20 19 18 22 22 C 1.53130 * 109.43083 * 199.03377 * 14 13 2 23 23 N 1.48713 * 107.78817 * 63.60629 * 16 15 14 24 24 C 1.46897 * 111.00029 * 168.11416 * 23 16 15 25 25 H 1.09004 * 109.47007 * 178.81654 * 1 2 3 26 26 H 1.09000 * 109.47091 * 298.82032 * 1 2 3 27 27 H 1.09001 * 109.47022 * 58.81866 * 1 2 3 28 28 H 1.08997 * 109.46791 * 294.99683 * 4 2 1 29 29 H 1.08997 * 109.47344 * 55.00007 * 4 2 1 30 30 H 0.97008 * 119.99774 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99775 * 126.28047 * 13 2 1 32 32 H 1.09001 * 109.42502 * 318.93525 * 14 13 2 33 33 H 1.09000 * 110.45923 * 306.72485 * 15 14 13 34 34 H 1.08998 * 109.24111 * 186.01963 * 15 14 13 35 35 H 1.09000 * 110.36598 * 330.33600 * 18 16 15 36 36 H 1.08997 * 110.45806 * 208.06159 * 18 16 15 37 37 H 1.09009 * 110.36103 * 118.84864 * 19 18 16 38 38 H 1.08999 * 110.36596 * 241.05431 * 19 18 16 39 39 H 1.09007 * 109.56698 * 174.12134 * 22 14 13 40 40 H 1.09000 * 109.66649 * 53.81989 * 22 14 13 41 41 H 1.08998 * 109.47511 * 60.00264 * 24 23 16 42 42 H 1.09000 * 109.47479 * 180.02562 * 24 23 16 43 43 H 1.08995 * 109.47550 * 299.99906 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8366 -3.3001 9 14 6.0920 -1.0600 -2.4374 10 1 6.6845 -1.6862 -1.2282 11 1 6.5870 -1.7601 -3.6499 12 1 6.4844 0.3710 -2.4967 13 7 2.0197 -0.6925 1.1994 14 6 2.6325 0.2543 2.1407 15 6 1.5163 0.9932 2.9088 16 6 0.7889 -0.0250 3.8014 17 1 -0.0968 0.4012 4.2726 18 6 0.4527 -1.2595 2.9335 19 6 1.6847 -2.1795 3.0610 20 6 2.6555 -1.4188 3.9932 21 1 3.2431 -2.0936 4.6156 22 6 3.5316 -0.5086 3.1176 23 7 1.7668 -0.5350 4.7990 24 6 1.0900 -1.2940 5.8591 25 1 -0.3633 -1.0275 -0.0212 26 1 -0.3633 0.4954 0.9004 27 1 -0.3633 0.5321 -0.8792 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 4.0608 -2.2434 -4.0356 31 1 2.6657 -1.4276 0.9540 32 1 3.2302 0.9792 1.5882 33 1 0.8070 1.4410 2.2128 34 1 1.9616 1.7705 3.5297 35 1 0.3057 -0.9642 1.8946 36 1 -0.4368 -1.7617 3.3138 37 1 1.4012 -3.1335 3.5058 38 1 2.1424 -2.3381 2.0846 39 1 4.0678 0.1997 3.7494 40 1 4.2462 -1.1152 2.5613 41 1 0.5644 -2.1419 5.4200 42 1 1.8281 -1.6551 6.5753 43 1 0.3754 -0.6480 6.3690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:11 Heat of formation + Delta-G solvation = 32.474529 kcal Electronic energy + Delta-G solvation = -20588.165440 eV Core-core repulsion = 17861.959337 eV Total energy + Delta-G solvation = -2726.206103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77205 -36.41134 -33.30521 -32.06382 -31.00453 -30.35116 -28.51465 -27.38538 -25.15278 -23.77998 -23.03561 -21.38759 -20.32738 -19.37484 -18.31112 -16.51624 -16.07993 -15.30537 -14.81403 -14.30127 -14.06316 -13.96454 -13.69257 -12.92741 -12.58777 -12.45264 -12.29590 -12.24261 -12.00715 -11.75932 -11.64075 -11.58031 -11.22563 -10.86574 -10.75146 -10.64772 -10.41556 -10.30354 -10.26549 -9.96010 -9.80288 -9.51047 -9.21450 -9.08420 -8.42769 -8.23221 -7.25759 -6.06051 -4.09576 3.28093 3.33643 3.35469 4.22741 4.40158 4.83634 5.02832 5.13018 5.30231 5.32426 5.37069 5.56986 5.60345 5.65701 5.69887 5.76263 5.80606 5.93336 5.96270 5.98862 6.09034 6.18995 6.21881 6.33070 6.41309 6.46627 6.48774 6.53534 6.58364 6.63222 6.83513 6.95336 6.98304 7.06783 7.34247 7.36039 7.51251 7.60537 7.92882 8.05836 8.23446 8.33575 8.97379 9.55412 11.04579 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029012 B = 0.006666 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.885726 B = 4199.624689 C = 4642.806329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.042 0.958 4 C 0.013 3.987 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.088 3.912 15 C -0.095 4.095 16 C 0.067 3.933 17 H 0.074 0.926 18 C -0.150 4.150 19 C -0.138 4.138 20 C 0.064 3.936 21 H 0.080 0.920 22 C -0.106 4.106 23 N -0.514 5.514 24 C 0.016 3.984 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.351 0.649 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.135 0.865 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.060 0.940 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 1.822 13.846 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.061 0.939 4 C -0.025 4.025 5 C -0.563 4.563 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.298 5.298 14 C -0.022 4.022 15 C -0.133 4.133 16 C -0.041 4.041 17 H 0.093 0.907 18 C -0.188 4.188 19 C -0.177 4.177 20 C -0.044 4.044 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.237 5.237 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.902 2.165 14.265 15.238 hybrid contribution 1.426 -0.491 -0.865 1.738 sum -3.476 1.674 13.401 13.945 Atomic orbital electron populations 1.21939 0.97057 1.01011 0.99581 1.21785 0.93280 0.96946 0.91445 0.93943 1.19463 0.95453 0.95878 0.91700 1.21150 0.92167 1.34564 1.08384 0.93022 1.24986 0.98143 0.95208 0.95699 1.69951 1.35579 1.35528 1.11910 0.86719 0.86009 0.78190 0.77437 1.20251 1.21308 1.20363 1.61909 1.41411 1.12579 1.13922 1.21726 0.93545 0.93876 0.93031 1.21901 0.97580 0.96609 0.97231 1.22909 0.93475 0.96370 0.91371 0.90742 1.23446 0.95265 0.94719 1.05393 1.23036 0.96743 0.96623 1.01252 1.23028 0.94879 0.93187 0.93323 0.90232 1.21810 0.97020 0.98556 0.97037 1.65502 1.16655 1.31451 1.10080 1.22375 0.98532 0.97229 0.95138 0.92901 0.93674 0.93621 0.95982 0.96275 0.92906 0.82499 0.93996 0.91501 0.92221 0.84760 0.95624 0.94633 0.88149 0.91456 0.91412 0.95321 0.92141 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.98 37.16 0.30 -2.02 16 2 C 0.07 1.44 2.24 -67.71 -0.15 1.29 16 3 H 0.04 0.86 7.27 -51.93 -0.38 0.48 16 4 C 0.01 0.31 4.36 -27.88 -0.12 0.18 16 5 C -0.52 -13.90 8.29 -34.44 -0.29 -14.18 16 6 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.66 -11.41 1.58 -98.94 -0.16 -11.56 16 14 C 0.09 1.41 2.69 -66.95 -0.18 1.23 16 15 C -0.09 -1.37 5.42 -25.67 -0.14 -1.51 16 16 C 0.07 0.93 3.64 -65.50 -0.24 0.70 16 17 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 18 C -0.15 -2.20 5.26 -25.21 -0.13 -2.34 16 19 C -0.14 -2.03 5.22 -25.22 -0.13 -2.17 16 20 C 0.06 0.90 3.70 -65.34 -0.24 0.66 16 21 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 22 C -0.11 -1.57 5.33 -26.30 -0.14 -1.71 16 23 N -0.51 -7.06 5.30 -220.89 -1.17 -8.23 16 24 C 0.02 0.19 9.45 60.06 0.57 0.76 16 25 H 0.05 0.89 7.84 -51.93 -0.41 0.49 16 26 H 0.04 0.68 5.95 -51.93 -0.31 0.37 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.35 6.76 5.43 -39.29 -0.21 6.54 16 32 H 0.04 0.75 7.59 -51.93 -0.39 0.35 16 33 H 0.07 0.97 6.27 -51.93 -0.33 0.64 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.13 2.12 2.37 -51.93 -0.12 2.00 16 36 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.03 0.51 8.01 -51.92 -0.42 0.09 16 38 H 0.10 1.64 4.71 -51.93 -0.24 1.40 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 41 H 0.03 0.35 6.88 -51.93 -0.36 -0.01 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -27.19 307.76 -9.32 -36.51 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.35 Total: 5.28 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.00 Total: -17.50 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.59 Total: -45.05 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.19 -9.32 -36.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.985 kcal (2) G-P(sol) polarization free energy of solvation -27.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds