Wall clock time and date at job start Mon Mar 30 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47007 * 2 1 4 4 C 1.53002 * 109.47183 * 240.00452 * 2 1 3 5 5 C 1.50697 * 109.47035 * 175.00070 * 4 2 1 6 6 H 1.08002 * 120.00550 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99905 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99841 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47064 * 59.99793 * 9 7 5 11 11 H 1.48507 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47194 * 299.99137 * 9 7 5 13 13 N 1.46897 * 109.47291 * 119.99991 * 2 1 3 14 14 C 1.46900 * 111.00457 * 250.23353 * 13 2 1 15 15 C 1.54326 * 109.01496 * 78.41910 * 14 13 2 16 16 C 1.53706 * 108.31081 * 66.72865 * 15 14 13 17 17 H 1.09003 * 112.12464 * 187.62197 * 16 15 14 18 18 C 1.54605 * 107.81188 * 311.63607 * 16 15 14 19 19 C 1.54290 * 104.83782 * 89.17233 * 18 16 15 20 20 C 1.54598 * 104.94249 * 359.95548 * 19 18 16 21 21 H 1.08999 * 112.22227 * 146.90496 * 20 19 18 22 22 C 1.53130 * 109.43083 * 199.03377 * 14 13 2 23 23 N 1.48713 * 107.78817 * 63.60629 * 16 15 14 24 24 C 1.46897 * 111.00029 * 168.11416 * 23 16 15 25 25 H 1.09004 * 109.47007 * 178.81654 * 1 2 3 26 26 H 1.09000 * 109.47091 * 298.82032 * 1 2 3 27 27 H 1.09001 * 109.47022 * 58.81866 * 1 2 3 28 28 H 1.08997 * 109.46791 * 294.99683 * 4 2 1 29 29 H 1.08997 * 109.47344 * 55.00007 * 4 2 1 30 30 H 0.97008 * 119.99774 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99775 * 126.28047 * 13 2 1 32 32 H 1.09001 * 109.42502 * 318.93525 * 14 13 2 33 33 H 1.09000 * 110.45923 * 306.72485 * 15 14 13 34 34 H 1.08998 * 109.24111 * 186.01963 * 15 14 13 35 35 H 1.09000 * 110.36598 * 330.33600 * 18 16 15 36 36 H 1.08997 * 110.45806 * 208.06159 * 18 16 15 37 37 H 1.09009 * 110.36103 * 118.84864 * 19 18 16 38 38 H 1.08999 * 110.36596 * 241.05431 * 19 18 16 39 39 H 1.09007 * 109.56698 * 174.12134 * 22 14 13 40 40 H 1.09000 * 109.66649 * 53.81989 * 22 14 13 41 41 H 1.08998 * 109.47511 * 60.00264 * 24 23 16 42 42 H 1.09000 * 109.47479 * 180.02562 * 24 23 16 43 43 H 1.08995 * 109.47550 * 299.99906 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8366 -3.3001 9 14 6.0920 -1.0600 -2.4374 10 1 6.6845 -1.6862 -1.2282 11 1 6.5870 -1.7601 -3.6499 12 1 6.4844 0.3710 -2.4967 13 7 2.0197 -0.6925 1.1994 14 6 2.6325 0.2543 2.1407 15 6 1.5163 0.9932 2.9088 16 6 0.7889 -0.0250 3.8014 17 1 -0.0968 0.4012 4.2726 18 6 0.4527 -1.2595 2.9335 19 6 1.6847 -2.1795 3.0610 20 6 2.6555 -1.4188 3.9932 21 1 3.2431 -2.0936 4.6156 22 6 3.5316 -0.5086 3.1176 23 7 1.7668 -0.5350 4.7990 24 6 1.0900 -1.2940 5.8591 25 1 -0.3633 -1.0275 -0.0212 26 1 -0.3633 0.4954 0.9004 27 1 -0.3633 0.5321 -0.8792 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 4.0608 -2.2434 -4.0356 31 1 2.6657 -1.4276 0.9540 32 1 3.2302 0.9792 1.5882 33 1 0.8070 1.4410 2.2128 34 1 1.9616 1.7705 3.5297 35 1 0.3057 -0.9642 1.8946 36 1 -0.4368 -1.7617 3.3138 37 1 1.4012 -3.1335 3.5058 38 1 2.1424 -2.3381 2.0846 39 1 4.0678 0.1997 3.7494 40 1 4.2462 -1.1152 2.5613 41 1 0.5644 -2.1419 5.4200 42 1 1.8281 -1.6551 6.5753 43 1 0.3754 -0.6480 6.3690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:10 Heat of formation + Delta-G solvation = 16.955055 kcal Electronic energy + Delta-G solvation = -20588.838415 eV Core-core repulsion = 17861.959337 eV Total energy + Delta-G solvation = -2726.879078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96539 -37.89067 -35.04771 -33.70965 -32.18396 -31.49639 -29.92570 -29.21504 -26.26711 -24.99702 -24.90144 -22.60831 -21.65565 -20.83199 -19.51136 -18.49764 -17.37898 -16.74286 -16.50937 -15.84853 -15.33560 -15.04441 -14.94579 -14.55177 -13.91027 -13.79501 -13.69187 -13.48185 -13.45631 -13.24303 -13.15548 -12.80716 -12.69935 -12.48626 -12.44814 -12.25428 -11.99806 -11.65093 -11.43520 -11.42974 -11.03448 -11.01765 -10.88518 -10.74176 -10.54979 -9.30152 -8.69860 -8.19245 -6.29250 1.38799 1.39576 1.47393 2.39260 3.13194 3.16287 3.47009 3.88487 3.93144 4.18627 4.31764 4.35212 4.42031 4.44202 4.52880 4.59616 4.67854 4.70752 4.72330 4.76869 4.86611 4.97994 5.04376 5.06855 5.09293 5.16956 5.23451 5.28350 5.33600 5.33660 5.42561 5.45578 5.52967 5.59963 5.71324 5.86501 5.92907 6.17383 6.23638 6.31950 6.49264 6.67005 6.86931 7.39925 8.91709 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029012 B = 0.006666 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.885726 B = 4199.624689 C = 4642.806329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.087 3.913 3 H 0.034 0.966 4 C 0.020 3.980 5 C -0.530 4.530 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.646 5.646 14 C 0.086 3.914 15 C -0.089 4.089 16 C 0.071 3.929 17 H 0.089 0.911 18 C -0.149 4.149 19 C -0.137 4.137 20 C 0.069 3.931 21 H 0.091 0.909 22 C -0.103 4.103 23 N -0.518 5.518 24 C 0.017 3.983 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.045 0.955 28 H -0.002 1.002 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.339 0.661 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 2.348 15.896 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.052 0.948 4 C -0.017 4.017 5 C -0.568 4.568 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.280 5.280 14 C -0.024 4.024 15 C -0.128 4.128 16 C -0.038 4.038 17 H 0.107 0.893 18 C -0.188 4.188 19 C -0.176 4.176 20 C -0.040 4.040 21 H 0.109 0.891 22 C -0.141 4.141 23 N -0.241 5.241 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.016 0.984 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.702 2.705 16.340 17.217 hybrid contribution 1.340 -0.661 -1.490 2.110 sum -3.362 2.045 14.849 15.362 Atomic orbital electron populations 1.21830 0.94813 1.01181 1.00760 1.21586 0.95024 0.95635 0.90042 0.94816 1.19346 0.94647 0.94700 0.93038 1.21481 0.93318 1.33839 1.08164 0.92671 1.25829 1.02886 0.94976 0.95451 1.70083 1.37429 1.36761 1.12673 0.85665 0.80390 0.78312 0.77650 1.19146 1.21205 1.19793 1.62108 1.41043 1.12124 1.12766 1.21806 0.94222 0.93385 0.92944 1.21852 0.96973 0.96743 0.97208 1.22898 0.93894 0.95684 0.91274 0.89298 1.23381 0.95326 0.95220 1.04870 1.22974 0.97037 0.97103 1.00478 1.22988 0.94732 0.93028 0.93233 0.89101 1.21770 0.96815 0.98638 0.96875 1.65486 1.16766 1.31710 1.10145 1.22429 0.98967 0.97152 0.94663 0.93192 0.91312 0.93616 0.98370 0.99262 0.92939 0.83900 0.95999 0.91507 0.91487 0.85973 0.95199 0.94222 0.90061 0.90685 0.92293 0.95701 0.91083 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.98 71.98 0.57 -3.65 16 2 C 0.09 3.37 2.24 44.92 0.10 3.47 16 3 H 0.03 1.37 7.27 -2.39 -0.02 1.36 16 4 C 0.02 1.02 4.36 29.85 0.13 1.15 16 5 C -0.53 -28.56 8.29 25.60 0.21 -28.35 16 6 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 7 C 0.01 0.38 5.46 84.66 0.46 0.85 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 9 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 N -0.65 -22.19 1.58 -466.95 -0.74 -22.93 16 14 C 0.09 2.68 2.69 45.41 0.12 2.80 16 15 C -0.09 -2.40 5.42 31.28 0.17 -2.23 16 16 C 0.07 1.78 3.64 45.35 0.17 1.95 16 17 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 18 C -0.15 -4.12 5.26 31.58 0.17 -3.95 16 19 C -0.14 -3.87 5.22 31.58 0.16 -3.70 16 20 C 0.07 1.79 3.70 45.29 0.17 1.96 16 21 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 22 C -0.10 -2.91 5.33 30.88 0.16 -2.74 16 23 N -0.52 -12.76 5.30 -852.75 -4.52 -17.28 16 24 C 0.02 0.34 9.45 127.69 1.21 1.55 16 25 H 0.05 1.67 7.84 -2.39 -0.02 1.65 16 26 H 0.07 1.94 5.95 -2.39 -0.01 1.93 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 31 H 0.34 13.25 5.43 -89.69 -0.49 12.76 16 32 H 0.02 0.77 7.59 -2.39 -0.02 0.75 16 33 H 0.07 1.79 6.27 -2.39 -0.01 1.78 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.12 3.69 2.37 -2.39 -0.01 3.69 16 36 H 0.03 0.79 8.10 -2.39 -0.02 0.77 16 37 H 0.04 1.08 8.01 -2.38 -0.02 1.06 16 38 H 0.08 2.64 4.71 -2.39 -0.01 2.63 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 41 H 0.02 0.53 6.88 -2.39 -0.02 0.51 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -57.94 307.76 1.35 -56.59 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.49 Total: 24.08 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 3.81 Total: -30.91 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.98 Total: -95.35 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -57.94 1.35 -56.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.543 kcal (2) G-P(sol) polarization free energy of solvation -57.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds