Wall clock time and date at job start Mon Mar 30 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47070 * 2 1 4 4 C 1.52998 * 109.46850 * 240.00194 * 2 1 3 5 5 C 1.50704 * 109.47061 * 173.62567 * 4 2 1 6 6 H 1.07995 * 119.99809 * 354.68984 * 5 4 2 7 7 C 1.37878 * 120.00045 * 174.69044 * 5 4 2 8 8 N 1.31519 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00064 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47110 * 59.99879 * 9 7 5 11 11 H 1.48499 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46977 * 299.99846 * 9 7 5 13 13 N 1.46896 * 109.47027 * 120.00549 * 2 1 3 14 14 C 1.47961 * 110.99645 * 301.47147 * 13 2 1 15 15 C 1.53937 * 86.18251 * 222.41970 * 14 13 2 16 16 N 1.46900 * 113.73674 * 138.08105 * 15 14 13 17 17 C 1.46843 * 110.99932 * 50.78861 * 16 15 14 18 18 C 1.53042 * 109.52225 * 185.84338 * 17 16 15 19 19 C 1.53125 * 109.27767 * 300.81998 * 18 17 16 20 20 C 1.53123 * 109.15747 * 57.65662 * 19 18 17 21 21 C 1.46846 * 111.00160 * 175.00596 * 16 15 14 22 22 C 1.47963 * 110.99843 * 202.11549 * 13 2 1 23 23 H 1.08998 * 109.46592 * 60.00013 * 1 2 3 24 24 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46837 * 300.00068 * 1 2 3 26 26 H 1.09001 * 109.46922 * 293.62106 * 4 2 1 27 27 H 1.08999 * 109.47619 * 53.62281 * 4 2 1 28 28 H 0.96995 * 119.99832 * 180.02562 * 8 7 5 29 29 H 1.09000 * 113.76113 * 108.10325 * 14 13 2 30 30 H 1.08995 * 113.76136 * 336.73606 * 14 13 2 31 31 H 1.09000 * 113.73476 * 269.25610 * 15 14 13 32 32 H 1.08998 * 109.46042 * 65.82840 * 17 16 15 33 33 H 1.09000 * 109.46280 * 305.85731 * 17 16 15 34 34 H 1.09002 * 109.49966 * 180.88405 * 18 17 16 35 35 H 1.08994 * 109.50513 * 60.76326 * 18 17 16 36 36 H 1.08991 * 109.51961 * 177.55722 * 19 18 17 37 37 H 1.08993 * 109.52045 * 297.75445 * 19 18 17 38 38 H 1.08995 * 109.50365 * 62.28558 * 20 19 18 39 39 H 1.09003 * 109.49965 * 182.40549 * 20 19 18 40 40 H 1.08997 * 109.46449 * 54.13723 * 21 16 15 41 41 H 1.09001 * 109.45497 * 294.16875 * 21 16 15 42 42 H 1.09005 * 113.75684 * 23.26224 * 22 13 2 43 43 H 1.08997 * 113.76097 * 251.89480 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5388 -0.5861 -1.3307 6 1 4.0649 0.0304 -0.6170 7 6 4.2382 -1.2495 -2.3165 8 7 3.5975 -2.0006 -3.1854 9 14 6.0958 -1.0814 -2.4179 10 1 6.7066 -1.5685 -1.1550 11 1 6.6044 -1.8879 -3.5564 12 1 6.4533 0.3453 -2.6226 13 7 2.0197 -0.6926 1.1993 14 6 1.5165 -0.0425 2.4295 15 6 2.9373 -0.2356 2.9895 16 7 3.4415 0.9248 3.7360 17 6 2.4716 1.3609 4.7486 18 6 2.9632 2.6534 5.4044 19 6 4.3283 2.4042 6.0520 20 6 5.3068 1.9048 4.9853 21 6 4.7473 0.6340 4.3417 22 6 3.4030 -0.2789 1.5229 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7729 -1.7765 -1.1940 27 1 1.5865 -0.2775 -2.1356 28 1 4.0896 -2.4675 -3.8787 29 1 0.7558 -0.6219 2.9528 30 1 1.2371 1.0020 2.2915 31 1 3.0745 -1.1762 3.5231 32 1 2.3659 0.5859 5.5078 33 1 1.5065 1.5387 4.2743 34 1 2.2508 2.9683 6.1669 35 1 3.0560 3.4327 4.6481 36 1 4.7020 3.3330 6.4827 37 1 4.2282 1.6527 6.8350 38 1 5.4364 2.6723 4.2225 39 1 6.2687 1.6849 5.4485 40 1 5.4348 0.2838 3.5719 41 1 4.6308 -0.1375 5.1028 42 1 3.6753 0.6965 1.1197 43 1 4.1496 -1.0472 1.3217 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697755398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:54 Heat of formation + Delta-G solvation = 23.845842 kcal Electronic energy + Delta-G solvation = -19612.189202 eV Core-core repulsion = 16885.608931 eV Total energy + Delta-G solvation = -2726.580271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00119 -37.98006 -34.14689 -32.52436 -31.36726 -30.88918 -27.74064 -26.03704 -25.21194 -23.59593 -22.80309 -22.61534 -19.81772 -19.29761 -19.15793 -16.40661 -16.07664 -15.51284 -14.90287 -14.60503 -14.42517 -14.01932 -13.85445 -13.61264 -13.23864 -12.92854 -12.47800 -12.22594 -12.11231 -11.77364 -11.52244 -11.32590 -11.24343 -11.10454 -10.91848 -10.76932 -10.61829 -10.47190 -10.41045 -10.33318 -9.97619 -9.84020 -9.05703 -8.87164 -8.27690 -8.17563 -7.94233 -5.90739 -3.90705 3.37226 3.41891 3.43821 3.93408 4.52533 4.62979 4.73465 4.81007 4.86269 4.92700 5.23813 5.40096 5.41396 5.46364 5.48263 5.56930 5.62494 5.69651 5.81300 5.84520 5.87615 5.92743 5.93719 5.98715 6.05544 6.07521 6.12675 6.27766 6.29201 6.46412 6.52383 6.67662 6.77240 6.96258 7.20324 7.29389 7.35595 7.61386 7.76662 8.07909 8.14838 8.51370 9.13640 9.71097 11.21040 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.006101 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.116116 B = 4588.218641 C = 5608.976910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.035 0.965 4 C 0.033 3.967 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.460 5.460 14 C 0.006 3.994 15 C 0.037 3.963 16 N -0.527 5.527 17 C 0.055 3.945 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.056 3.944 22 C 0.049 3.951 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.014 0.986 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 7.316 17.238 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.184 5.184 14 C -0.124 4.124 15 C -0.072 4.072 16 N -0.252 5.252 17 C -0.073 4.073 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.080 4.080 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.186 6.891 16.584 17.998 hybrid contribution 1.083 0.200 0.442 1.187 sum -0.103 7.092 17.026 18.444 Atomic orbital electron populations 1.21865 0.96533 1.01563 1.00072 1.22308 0.93245 0.96043 0.93756 0.94708 1.19088 0.95627 0.96242 0.89501 1.21316 0.92447 1.28219 1.13088 0.92294 1.24971 0.97904 0.95506 0.95930 1.69957 1.35415 1.31100 1.17196 0.86762 0.86405 0.77959 0.77493 1.20297 1.21445 1.20413 1.68528 1.03790 1.45860 1.00178 1.23957 0.95498 0.98577 0.94334 1.23868 0.96406 0.91536 0.95350 1.62199 1.02635 1.34533 1.25873 1.22044 0.96023 0.96055 0.93188 1.21588 0.96483 0.97882 0.99496 1.21571 0.95738 1.00719 0.97762 1.21586 0.97775 0.97973 0.98129 1.22056 0.91435 0.96186 0.97538 1.23810 0.93366 1.00793 0.90002 0.92801 0.92503 0.94290 0.95292 0.96824 0.93158 0.90729 0.91396 0.91344 0.95373 0.90664 0.91934 0.91138 0.92125 0.92550 0.91049 0.91846 0.90483 0.95295 0.90585 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.06 37.16 0.34 -2.24 16 2 C 0.06 1.17 1.98 -67.71 -0.13 1.04 16 3 H 0.03 0.76 7.58 -51.93 -0.39 0.37 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.51 -14.30 8.06 -34.44 -0.28 -14.58 16 6 H 0.06 1.58 5.19 -52.49 -0.27 1.31 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.46 -9.17 5.98 -230.41 -1.38 -10.55 16 14 C 0.01 0.09 5.12 -2.77 -0.01 0.08 16 15 C 0.04 0.57 3.48 -69.39 -0.24 0.33 16 16 N -0.53 -7.23 4.64 -228.08 -1.06 -8.29 16 17 C 0.05 0.64 5.23 -3.83 -0.02 0.62 16 18 C -0.12 -1.16 6.09 -26.64 -0.16 -1.33 16 19 C -0.12 -1.13 6.00 -26.60 -0.16 -1.29 16 20 C -0.12 -1.22 6.09 -26.65 -0.16 -1.39 16 21 C 0.06 0.69 5.44 -3.83 -0.02 0.67 16 22 C 0.05 0.95 5.39 -2.76 -0.01 0.93 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.61 6.93 -51.93 -0.36 0.25 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.07 6.97 -51.93 -0.36 0.70 16 31 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.88 6.50 -51.93 -0.34 0.54 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 1.55 6.71 -51.93 -0.35 1.21 16 43 H 0.09 1.78 8.00 -51.93 -0.42 1.37 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -29.71 325.06 -10.88 -40.59 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.96 Total: -2.08 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.10 Total: -14.85 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.70 Total: -45.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.71 -10.88 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697755398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds